Wall clock time and date at job start Tue Mar 31 2020 10:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47357 * 2 1 4 4 C 1.38280 * 119.93118 * 90.00145 * 3 2 1 5 5 C 1.38114 * 120.07321 * 180.02562 * 4 3 2 6 6 C 1.38878 * 119.92805 * 359.97438 * 5 4 3 7 7 N 1.39928 * 120.06856 * 180.02562 * 6 5 4 8 8 C 1.34773 * 120.00031 * 35.08551 * 7 6 5 9 9 O 1.21284 * 119.99961 * 355.37815 * 8 7 6 10 10 C 1.50703 * 119.99820 * 175.37397 * 8 7 6 11 11 N 1.46497 * 109.46923 * 180.02562 * 10 8 7 12 12 C 1.35319 * 125.86963 * 125.32704 * 11 10 8 13 13 C 1.35352 * 106.17455 * 180.11457 * 12 11 10 14 14 C 1.50703 * 126.74991 * 179.85034 * 13 12 11 15 15 C 1.50698 * 109.46708 * 124.71044 * 14 13 12 16 16 H 1.07997 * 120.00310 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99574 * 179.72429 * 15 14 13 18 18 N 1.31511 * 120.00325 * 0.27925 * 17 15 14 19 19 Si 1.86806 * 119.99860 * 180.28106 * 17 15 14 20 20 H 1.48499 * 109.46918 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47205 * 120.00276 * 19 17 15 22 22 H 1.48501 * 109.46984 * 239.99767 * 19 17 15 23 23 N 1.33769 * 106.49429 * 359.59057 * 13 12 11 24 24 N 1.28632 * 108.89043 * 0.26538 * 23 13 12 25 25 C 1.38869 * 119.85548 * 0.28161 * 6 5 4 26 26 C 1.38110 * 119.93087 * 359.46892 * 25 6 5 27 27 H 1.08998 * 109.47246 * 59.99890 * 1 2 3 28 28 H 1.09002 * 109.47157 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47021 * 300.00129 * 1 2 3 30 30 H 1.09005 * 109.47398 * 239.99754 * 2 1 3 31 31 H 1.08998 * 109.47246 * 120.00110 * 2 1 3 32 32 H 1.08005 * 119.96453 * 0.02562 * 4 3 2 33 33 H 1.08002 * 120.03946 * 179.97438 * 5 4 3 34 34 H 0.97000 * 119.99551 * 215.08613 * 7 6 5 35 35 H 1.08996 * 109.47080 * 60.00328 * 10 8 7 36 36 H 1.09002 * 109.46957 * 300.00270 * 10 8 7 37 37 H 1.07998 * 126.90714 * 359.96855 * 12 11 10 38 38 H 1.08999 * 109.46811 * 4.71676 * 14 13 12 39 39 H 1.09000 * 109.47172 * 244.71532 * 14 13 12 40 40 H 0.96998 * 120.00210 * 179.97438 * 18 17 15 41 41 H 1.08003 * 120.03011 * 179.71965 * 25 6 5 42 42 H 1.07997 * 119.96507 * 180.25749 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0712 1.1984 5 6 2.7223 3.3735 1.2018 6 6 2.9543 4.0296 -0.0001 7 7 3.4207 5.3488 0.0000 8 6 4.2779 5.7605 0.9550 9 8 4.5797 5.0136 1.8618 10 6 4.8614 7.1487 0.8963 11 7 5.7565 7.3509 2.0382 12 6 7.0509 7.7399 1.9719 13 6 7.4934 7.7969 3.2498 14 6 8.8772 8.1786 3.7086 15 6 8.7839 9.3140 4.6952 16 1 7.8191 9.7184 4.9634 17 6 9.9299 9.8322 5.2600 18 7 11.1048 9.3395 4.9338 19 14 9.8138 11.2344 6.4889 20 1 8.3891 11.6053 6.6834 21 1 10.3957 10.8053 7.7860 22 1 10.5643 12.4076 5.9736 23 7 6.4591 7.4535 4.0255 24 7 5.4452 7.1951 3.2774 25 6 2.7172 3.3753 -1.2018 26 6 2.2622 2.0713 -1.1984 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.0822 1.5603 2.1327 33 1 2.9014 3.8812 2.1381 34 1 3.1271 5.9670 -0.6874 35 1 4.0565 7.8829 0.9307 36 1 5.4226 7.2680 -0.0305 37 1 7.6175 7.9583 1.0788 38 1 9.4713 8.4913 2.8500 39 1 9.3514 7.3208 4.1855 40 1 11.9110 9.7044 5.3309 41 1 2.8923 3.8844 -2.1381 42 1 2.0816 1.5606 -2.1327 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603163745.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:37 Heat of formation + Delta-G solvation = 87.394404 kcal Electronic energy + Delta-G solvation = -24242.063983 eV Core-core repulsion = 20610.423766 eV Total energy + Delta-G solvation = -3631.640217 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.56210 -40.81785 -39.02827 -35.74987 -34.49318 -33.46042 -33.05043 -31.21779 -31.02960 -29.64986 -28.06473 -27.18177 -24.25698 -23.39982 -23.27804 -22.17530 -21.13973 -20.81092 -20.09181 -18.23269 -17.65509 -16.70872 -16.28283 -16.09183 -15.83922 -15.67461 -14.87594 -14.53457 -14.47745 -14.10051 -14.04468 -14.01642 -13.67339 -13.54683 -13.22522 -12.78925 -12.50892 -12.33588 -12.08290 -11.72750 -11.66811 -11.42249 -11.21079 -10.99265 -10.70691 -10.62978 -10.58866 -10.23784 -10.06580 -9.67733 -9.42244 -9.25985 -9.18003 -8.41176 -8.35239 -8.10692 -5.96680 -3.97080 0.93255 1.14383 2.00598 2.19098 2.43918 2.91275 3.37068 3.43769 3.48487 3.48931 3.56380 4.08623 4.39895 4.44708 4.51119 4.53684 4.65832 4.70809 4.80519 4.99910 5.10528 5.14513 5.17258 5.25640 5.30599 5.40099 5.54053 5.61906 5.75170 5.81594 5.83239 6.00170 6.02976 6.08873 6.19875 6.27331 6.37337 6.75227 6.87127 7.11879 7.15575 7.55593 7.65500 7.70532 8.01374 8.39756 9.06701 9.33012 9.65648 11.14493 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.035993 B = 0.002068 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.746794 B =13534.563589 C =13779.350200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.098 4.098 4 C -0.099 4.099 5 C -0.115 4.115 6 C 0.140 3.860 7 N -0.674 5.674 8 C 0.499 3.501 9 O -0.479 6.479 10 C 0.109 3.891 11 N -0.302 5.302 12 C -0.084 4.084 13 C 0.039 3.961 14 C 0.091 3.909 15 C -0.502 4.502 16 H 0.060 0.940 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.285 1.285 23 N -0.257 5.257 24 N -0.082 5.082 25 C -0.141 4.141 26 C -0.102 4.102 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.125 0.875 33 H 0.141 0.859 34 H 0.412 0.588 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.183 0.817 38 H 0.037 0.963 39 H 0.040 0.960 40 H 0.260 0.740 41 H 0.125 0.875 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.953 -13.558 -19.534 31.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.098 4.098 4 C -0.117 4.117 5 C -0.135 4.135 6 C 0.047 3.953 7 N -0.321 5.321 8 C 0.284 3.716 9 O -0.349 6.349 10 C -0.018 4.018 11 N -0.098 5.098 12 C -0.231 4.231 13 C -0.097 4.097 14 C 0.052 3.948 15 C -0.541 4.541 16 H 0.078 0.922 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 N -0.126 5.126 24 N -0.061 5.061 25 C -0.162 4.162 26 C -0.120 4.120 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.143 0.857 33 H 0.159 0.841 34 H 0.248 0.752 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.200 0.800 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.143 0.857 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.597 -14.401 -17.820 31.486 hybrid contribution 0.694 1.436 -0.736 1.756 sum -20.903 -12.965 -18.557 30.812 Atomic orbital electron populations 1.21752 0.94754 1.01666 1.02222 1.20525 0.96126 0.92605 1.02898 1.19914 1.00260 0.96522 0.93129 1.20978 0.98661 0.94316 0.97762 1.21371 0.98506 0.95551 0.98097 1.17697 0.98798 0.84646 0.94179 1.43344 1.46237 1.11180 1.31324 1.20690 0.79187 0.89471 0.82270 1.90859 1.57629 1.54432 1.32001 1.21535 0.95787 0.95578 0.88928 1.46554 1.09564 1.47031 1.06631 1.23319 0.85498 1.12453 1.01860 1.23023 0.99135 0.99071 0.88511 1.17750 0.82898 0.97115 0.96994 1.21090 0.93027 1.16058 1.23895 0.92189 1.24980 0.95303 0.97303 0.96896 1.69955 0.97521 1.42267 1.44058 0.86454 0.78137 0.81861 0.81110 1.19703 1.20955 1.21138 1.75104 0.97027 1.14892 1.25538 1.78301 1.22740 1.18879 0.86178 1.20853 1.03764 0.95283 0.96267 1.20780 0.99637 0.93952 0.97643 0.92618 0.92443 0.92495 0.91096 0.90987 0.85717 0.84110 0.75245 0.85727 0.84904 0.79982 0.94493 0.94198 0.92992 0.85680 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.89 37.16 0.37 -0.45 16 2 C -0.08 -0.54 6.06 -27.89 -0.17 -0.71 16 3 C -0.10 -0.83 5.14 -104.59 -0.54 -1.36 16 4 C -0.10 -0.99 9.69 -39.61 -0.38 -1.37 16 5 C -0.12 -1.35 8.70 -39.39 -0.34 -1.69 16 6 C 0.14 1.38 6.30 -83.69 -0.53 0.86 16 7 N -0.67 -5.37 5.34 -9.86 -0.05 -5.42 16 8 C 0.50 5.78 7.69 -10.99 -0.08 5.69 16 9 O -0.48 -8.17 13.11 5.55 0.07 -8.09 16 10 C 0.11 1.05 6.94 -5.19 -0.04 1.01 16 11 N -0.30 -5.10 3.20 -62.44 -0.20 -5.30 16 12 C -0.08 -1.54 11.49 -17.04 -0.20 -1.74 16 13 C 0.04 0.91 6.44 -82.78 -0.53 0.38 16 14 C 0.09 2.43 5.55 -29.03 -0.16 2.27 16 15 C -0.50 -14.67 9.09 -34.44 -0.31 -14.98 16 16 H 0.06 1.79 7.74 -52.49 -0.41 1.38 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 19 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 20 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 N -0.26 -6.43 12.40 33.29 0.41 -6.02 16 24 N -0.08 -1.77 12.13 60.35 0.73 -1.04 16 25 C -0.14 -1.11 9.97 -39.39 -0.39 -1.50 16 26 C -0.10 -0.78 9.69 -39.61 -0.38 -1.17 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 33 H 0.14 1.97 6.23 -52.49 -0.33 1.64 16 34 H 0.41 1.49 8.82 -40.82 -0.36 1.13 16 35 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.13 0.70 8.07 -51.93 -0.42 0.28 16 37 H 0.18 2.53 8.06 -52.49 -0.42 2.11 16 38 H 0.04 0.96 8.12 -51.93 -0.42 0.54 16 39 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -38.63 364.81 -7.32 -45.95 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -5.71 Total: -3.46 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -3.79 Total: -13.24 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 1.63 Total: -43.95 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.07 Total: -8.09 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -38.63 -7.32 -45.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603163745.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.347 kcal (2) G-P(sol) polarization free energy of solvation -38.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds