Wall clock time and date at job start Tue Mar 31 2020 10:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47357 * 2 1 4 4 C 1.38280 * 119.93118 * 90.00145 * 3 2 1 5 5 C 1.38114 * 120.07321 * 180.02562 * 4 3 2 6 6 C 1.38878 * 119.92805 * 359.97438 * 5 4 3 7 7 N 1.39928 * 120.06856 * 180.02562 * 6 5 4 8 8 C 1.34773 * 120.00031 * 35.08551 * 7 6 5 9 9 O 1.21284 * 119.99961 * 355.37815 * 8 7 6 10 10 C 1.50703 * 119.99820 * 175.37397 * 8 7 6 11 11 N 1.46497 * 109.46923 * 180.02562 * 10 8 7 12 12 C 1.35319 * 125.86963 * 125.32704 * 11 10 8 13 13 C 1.35352 * 106.17455 * 180.11457 * 12 11 10 14 14 C 1.50703 * 126.74991 * 179.85034 * 13 12 11 15 15 C 1.50698 * 109.46708 * 124.71044 * 14 13 12 16 16 H 1.07997 * 120.00310 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99574 * 179.72429 * 15 14 13 18 18 N 1.31511 * 120.00325 * 0.27925 * 17 15 14 19 19 Si 1.86806 * 119.99860 * 180.28106 * 17 15 14 20 20 H 1.48499 * 109.46918 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47205 * 120.00276 * 19 17 15 22 22 H 1.48501 * 109.46984 * 239.99767 * 19 17 15 23 23 N 1.33769 * 106.49429 * 359.59057 * 13 12 11 24 24 N 1.28632 * 108.89043 * 0.26538 * 23 13 12 25 25 C 1.38869 * 119.85548 * 0.28161 * 6 5 4 26 26 C 1.38110 * 119.93087 * 359.46892 * 25 6 5 27 27 H 1.08998 * 109.47246 * 59.99890 * 1 2 3 28 28 H 1.09002 * 109.47157 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47021 * 300.00129 * 1 2 3 30 30 H 1.09005 * 109.47398 * 239.99754 * 2 1 3 31 31 H 1.08998 * 109.47246 * 120.00110 * 2 1 3 32 32 H 1.08005 * 119.96453 * 0.02562 * 4 3 2 33 33 H 1.08002 * 120.03946 * 179.97438 * 5 4 3 34 34 H 0.97000 * 119.99551 * 215.08613 * 7 6 5 35 35 H 1.08996 * 109.47080 * 60.00328 * 10 8 7 36 36 H 1.09002 * 109.46957 * 300.00270 * 10 8 7 37 37 H 1.07998 * 126.90714 * 359.96855 * 12 11 10 38 38 H 1.08999 * 109.46811 * 4.71676 * 14 13 12 39 39 H 1.09000 * 109.47172 * 244.71532 * 14 13 12 40 40 H 0.96998 * 120.00210 * 179.97438 * 18 17 15 41 41 H 1.08003 * 120.03011 * 179.71965 * 25 6 5 42 42 H 1.07997 * 119.96507 * 180.25749 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0712 1.1984 5 6 2.7223 3.3735 1.2018 6 6 2.9543 4.0296 -0.0001 7 7 3.4207 5.3488 0.0000 8 6 4.2779 5.7605 0.9550 9 8 4.5797 5.0136 1.8618 10 6 4.8614 7.1487 0.8963 11 7 5.7565 7.3509 2.0382 12 6 7.0509 7.7399 1.9719 13 6 7.4934 7.7969 3.2498 14 6 8.8772 8.1786 3.7086 15 6 8.7839 9.3140 4.6952 16 1 7.8191 9.7184 4.9634 17 6 9.9299 9.8322 5.2600 18 7 11.1048 9.3395 4.9338 19 14 9.8138 11.2344 6.4889 20 1 8.3891 11.6053 6.6834 21 1 10.3957 10.8053 7.7860 22 1 10.5643 12.4076 5.9736 23 7 6.4591 7.4535 4.0255 24 7 5.4452 7.1951 3.2774 25 6 2.7172 3.3753 -1.2018 26 6 2.2622 2.0713 -1.1984 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.0822 1.5603 2.1327 33 1 2.9014 3.8812 2.1381 34 1 3.1271 5.9670 -0.6874 35 1 4.0565 7.8829 0.9307 36 1 5.4226 7.2680 -0.0305 37 1 7.6175 7.9583 1.0788 38 1 9.4713 8.4913 2.8500 39 1 9.3514 7.3208 4.1855 40 1 11.9110 9.7044 5.3309 41 1 2.8923 3.8844 -2.1381 42 1 2.0816 1.5606 -2.1327 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603163745.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:36 Heat of formation + Delta-G solvation = 60.263418 kcal Electronic energy + Delta-G solvation = -24243.240471 eV Core-core repulsion = 20610.423766 eV Total energy + Delta-G solvation = -3632.816705 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.07866 -41.64330 -39.80476 -36.54459 -35.99660 -35.05397 -34.02888 -32.87348 -31.90328 -30.60191 -29.42063 -28.57154 -25.47200 -24.94805 -23.98063 -23.24329 -22.42744 -21.76474 -21.28101 -19.12629 -18.65907 -18.34423 -17.80457 -17.07942 -16.78796 -16.53980 -16.45297 -15.80223 -15.66521 -15.25723 -14.83827 -14.66517 -14.56398 -14.39656 -14.27718 -14.14855 -13.74751 -13.63865 -13.40195 -12.95212 -12.85728 -12.64974 -12.47150 -12.33885 -11.98699 -11.88806 -11.73614 -11.66277 -11.55404 -11.33899 -11.14261 -10.73243 -10.57429 -9.89180 -9.84906 -9.05468 -8.18401 -6.27001 0.21577 0.44104 0.69696 1.32567 1.37062 1.39770 1.41893 1.55003 1.79322 1.99551 2.44929 2.80232 3.14187 3.31190 3.65128 3.83460 3.89369 3.90638 4.02046 4.07004 4.26843 4.29366 4.45142 4.48347 4.52040 4.57435 4.62971 4.74227 4.76234 5.05582 5.09803 5.13312 5.29179 5.29910 5.33524 5.41188 5.44398 5.48816 5.54068 5.71073 5.74445 5.77453 6.06296 6.23129 6.29267 6.81477 6.97773 7.39580 7.72221 8.92775 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.035993 B = 0.002068 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.746794 B =13534.563589 C =13779.350200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.100 4.100 4 C -0.117 4.117 5 C -0.144 4.144 6 C 0.123 3.877 7 N -0.648 5.648 8 C 0.498 3.502 9 O -0.545 6.545 10 C 0.097 3.903 11 N -0.284 5.284 12 C -0.046 4.046 13 C -0.012 4.012 14 C 0.102 3.898 15 C -0.522 4.522 16 H 0.045 0.955 17 C 0.007 3.993 18 N -0.927 5.927 19 Si 0.964 3.036 20 H -0.274 1.274 21 H -0.279 1.279 22 H -0.269 1.269 23 N -0.313 5.313 24 N -0.103 5.103 25 C -0.131 4.131 26 C -0.102 4.102 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.121 0.879 33 H 0.106 0.894 34 H 0.435 0.565 35 H 0.166 0.834 36 H 0.193 0.807 37 H 0.235 0.765 38 H 0.039 0.961 39 H 0.003 0.997 40 H 0.266 0.734 41 H 0.161 0.839 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.195 -12.866 -23.433 34.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.100 4.100 4 C -0.136 4.136 5 C -0.164 4.164 6 C 0.030 3.970 7 N -0.297 5.297 8 C 0.284 3.716 9 O -0.420 6.420 10 C -0.026 4.026 11 N -0.080 5.080 12 C -0.195 4.195 13 C -0.149 4.149 14 C 0.063 3.937 15 C -0.560 4.560 16 H 0.063 0.937 17 C -0.191 4.191 18 N -0.568 5.568 19 Si 0.789 3.211 20 H -0.199 1.199 21 H -0.204 1.204 22 H -0.194 1.194 23 N -0.180 5.180 24 N -0.082 5.082 25 C -0.151 4.151 26 C -0.121 4.121 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.124 0.876 34 H 0.276 0.724 35 H 0.183 0.817 36 H 0.210 0.790 37 H 0.252 0.748 38 H 0.057 0.943 39 H 0.021 0.979 40 H 0.075 0.925 41 H 0.179 0.821 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -22.911 -13.702 -21.781 34.454 hybrid contribution 0.963 1.105 0.315 1.499 sum -21.949 -12.597 -21.465 33.184 Atomic orbital electron populations 1.21731 0.94067 1.02383 1.01946 1.20576 0.96649 0.91377 1.03520 1.20191 0.99534 0.97460 0.92830 1.21067 0.99576 0.94138 0.98778 1.21265 1.00725 0.96563 0.97883 1.17853 0.99468 0.85471 0.94251 1.43088 1.44713 1.11061 1.30847 1.21052 0.79076 0.89690 0.81796 1.90870 1.60144 1.56330 1.34688 1.22331 0.96813 0.95149 0.88274 1.46970 1.10003 1.44002 1.06986 1.23811 0.85706 1.08625 1.01351 1.22724 0.98189 1.02935 0.91041 1.17400 0.85055 0.94973 0.96252 1.21309 0.92556 1.17119 1.25058 0.93715 1.25813 0.94860 0.99829 0.98616 1.70048 0.98162 1.43502 1.45047 0.85420 0.78049 0.79011 0.78655 1.19868 1.20437 1.19365 1.74999 0.98205 1.16879 1.27908 1.78161 1.22047 1.19858 0.88131 1.21212 1.01997 0.95272 0.96570 1.21208 0.98424 0.94079 0.98348 0.92094 0.91248 0.93563 0.89503 0.91359 0.86054 0.87572 0.72383 0.81708 0.79028 0.74846 0.94315 0.97882 0.92508 0.82149 0.82803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.89 71.98 0.71 -0.69 16 2 C -0.08 -0.95 6.06 29.85 0.18 -0.77 16 3 C -0.10 -1.58 5.14 -19.85 -0.10 -1.68 16 4 C -0.12 -2.48 9.69 22.25 0.22 -2.27 16 5 C -0.14 -3.58 8.70 22.39 0.19 -3.39 16 6 C 0.12 2.27 6.30 38.15 0.24 2.51 16 7 N -0.65 -8.69 5.34 -303.50 -1.62 -10.31 16 8 C 0.50 10.69 7.69 87.66 0.67 11.36 16 9 O -0.55 -19.17 13.11 -3.04 -0.04 -19.21 16 10 C 0.10 1.49 6.94 85.63 0.59 2.08 16 11 N -0.28 -9.06 3.20 -351.47 -1.12 -10.18 16 12 C -0.05 -1.59 11.49 83.49 0.96 -0.63 16 13 C -0.01 -0.56 6.44 41.60 0.27 -0.29 16 14 C 0.10 5.66 5.55 29.10 0.16 5.82 16 15 C -0.52 -31.50 9.09 25.60 0.23 -31.27 16 16 H 0.04 2.77 7.74 -2.91 -0.02 2.75 16 17 C 0.01 0.40 5.46 84.66 0.46 0.87 16 18 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 19 Si 0.96 46.34 29.54 68.60 2.03 48.37 16 20 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 N -0.31 -16.27 12.40 -48.60 -0.60 -16.88 16 24 N -0.10 -4.52 12.13 37.02 0.45 -4.07 16 25 C -0.13 -1.62 9.97 22.39 0.22 -1.40 16 26 C -0.10 -1.28 9.69 22.25 0.22 -1.06 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.09 0.72 8.08 -2.38 -0.02 0.70 16 31 H 0.07 0.82 8.08 -2.39 -0.02 0.80 16 32 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.11 3.35 6.23 -2.91 -0.02 3.33 16 34 H 0.44 1.28 8.82 -92.71 -0.82 0.46 16 35 H 0.17 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.19 0.71 8.07 -2.39 -0.02 0.69 16 37 H 0.24 5.37 8.06 -2.91 -0.02 5.35 16 38 H 0.04 2.07 8.12 -2.39 -0.02 2.05 16 39 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 42 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 Total: -1.00 -92.65 364.81 4.83 -87.82 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 0.22 Total: 1.41 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 5.23 Total: -20.80 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -2.61 Total: -97.59 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.04 Total: -19.21 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -92.65 4.83 -87.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603163745.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.079 kcal (2) G-P(sol) polarization free energy of solvation -92.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds