Wall clock time and date at job start Tue Mar 31 2020 10:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47292 * 2 1 4 4 C 1.38136 * 120.03521 * 265.00343 * 3 2 1 5 5 C 1.38257 * 120.07185 * 180.02562 * 4 3 2 6 6 C 1.38308 * 120.14064 * 359.97438 * 5 4 3 7 7 C 1.38091 * 120.06867 * 359.97438 * 6 5 4 8 8 C 1.38847 * 120.03273 * 85.02263 * 3 2 1 9 9 N 1.39918 * 120.07159 * 0.02562 * 8 3 2 10 10 C 1.34780 * 119.99891 * 145.30624 * 9 8 3 11 11 O 1.21292 * 119.99936 * 4.49449 * 10 9 8 12 12 C 1.50696 * 119.99980 * 184.49910 * 10 9 8 13 13 N 1.46505 * 109.47420 * 179.97438 * 12 10 9 14 14 C 1.35313 * 125.86765 * 124.70654 * 13 12 10 15 15 C 1.35348 * 106.17437 * 179.90810 * 14 13 12 16 16 C 1.50703 * 126.75216 * 180.12758 * 15 14 13 17 17 C 1.50699 * 109.46786 * 125.25138 * 16 15 14 18 18 H 1.07995 * 120.00560 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99764 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00056 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99977 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46621 * 90.00384 * 21 19 17 23 23 H 1.48499 * 109.46965 * 210.00075 * 21 19 17 24 24 H 1.48497 * 109.46871 * 330.00346 * 21 19 17 25 25 N 1.33774 * 106.49446 * 0.35807 * 15 14 13 26 26 N 1.28632 * 108.88686 * 359.77242 * 25 15 14 27 27 H 1.09000 * 109.47253 * 299.99997 * 1 2 3 28 28 H 1.08996 * 109.47269 * 59.99953 * 1 2 3 29 29 H 1.09001 * 109.47547 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46792 * 239.99875 * 2 1 3 31 31 H 1.08996 * 109.47269 * 120.00047 * 2 1 3 32 32 H 1.08004 * 119.96579 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.92921 * 180.02562 * 5 4 3 34 34 H 1.07992 * 119.96457 * 180.02562 * 6 5 4 35 35 H 1.08002 * 120.03579 * 179.74291 * 7 6 5 36 36 H 0.97002 * 120.00468 * 325.30222 * 9 8 3 37 37 H 1.09001 * 109.47194 * 299.99432 * 12 10 9 38 38 H 1.09000 * 109.47692 * 59.99594 * 12 10 9 39 39 H 1.07999 * 126.91518 * 0.02562 * 14 13 12 40 40 H 1.08999 * 109.47122 * 245.24790 * 16 15 14 41 41 H 1.08998 * 109.47030 * 5.25050 * 16 15 14 42 42 H 0.97007 * 120.00313 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3610 2.0379 -1.1913 5 6 2.8225 3.3412 -1.1922 6 6 2.9561 4.0314 -0.0011 7 6 2.6282 3.4205 1.1931 8 6 2.1657 2.1107 1.1975 9 7 1.8345 1.4882 2.4060 10 6 2.5371 1.7662 3.5220 11 8 3.4027 2.6155 3.4979 12 6 2.2473 1.0218 4.7999 13 7 3.1386 1.5031 5.8583 14 6 2.7518 1.9900 7.0601 15 6 3.8886 2.3125 7.7199 16 6 3.9925 2.8938 9.1065 17 6 4.8898 2.0247 9.9495 18 1 5.3394 1.1398 9.5241 19 6 5.1358 2.3588 11.2644 20 7 5.9184 1.6002 12.0003 21 14 4.3575 3.8892 12.0006 22 1 3.0427 3.5385 12.5952 23 1 5.2470 4.4385 13.0551 24 1 4.1640 4.9068 10.9365 25 7 4.9017 2.0185 6.8973 26 7 4.4240 1.5409 5.8026 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.2574 1.5018 -2.1232 33 1 3.0784 3.8216 -2.1249 34 1 3.3164 5.0494 -0.0051 35 1 2.7366 3.9585 2.1233 36 1 1.0992 0.8565 2.4407 37 1 1.2110 1.1914 5.0922 38 1 2.4112 -0.0445 4.6444 39 1 1.7396 2.0976 7.4210 40 1 4.4102 3.8989 9.0487 41 1 3.0011 2.9376 9.5573 42 1 6.0918 1.8354 12.9253 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603175388.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:40 Heat of formation + Delta-G solvation = 94.135536 kcal Electronic energy + Delta-G solvation = -24760.276314 eV Core-core repulsion = 21128.928414 eV Total energy + Delta-G solvation = -3631.347900 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.65494 -40.99732 -38.96564 -35.38557 -34.60326 -34.24541 -33.09908 -31.28359 -30.56214 -29.75169 -28.45598 -27.61007 -24.31973 -23.66858 -23.11842 -21.82576 -21.22904 -20.92054 -19.99520 -18.22391 -17.68882 -16.78852 -16.67757 -16.27306 -16.08503 -15.42604 -15.24120 -14.61937 -14.37200 -14.13650 -14.07885 -14.00746 -13.82204 -13.64234 -13.23561 -12.80242 -12.58280 -12.27976 -12.16649 -12.06606 -12.01037 -11.44783 -11.36745 -11.10992 -10.72234 -10.61995 -10.57801 -10.30439 -10.07439 -9.82960 -9.40942 -9.29985 -9.04942 -8.51769 -8.45669 -8.24964 -5.97650 -3.95544 0.92995 1.10589 1.95274 2.12806 2.38014 2.86006 3.32927 3.41605 3.42831 3.45635 3.47728 4.05244 4.29811 4.32262 4.42459 4.48466 4.62124 4.72085 4.80441 4.88144 4.98322 5.04314 5.11352 5.18591 5.26377 5.34283 5.42812 5.49762 5.67780 5.68499 5.78202 5.93133 5.95257 6.06966 6.15866 6.19697 6.28687 6.72941 6.82197 6.86751 7.04678 7.11026 7.23402 7.66015 7.75238 8.59910 9.10434 9.25425 9.61422 11.15843 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.029424 B = 0.002401 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.388856 B =11659.131539 C =12075.128877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.108 4.108 4 C -0.102 4.102 5 C -0.132 4.132 6 C -0.106 4.106 7 C -0.117 4.117 8 C 0.149 3.851 9 N -0.672 5.672 10 C 0.499 3.501 11 O -0.478 6.478 12 C 0.107 3.893 13 N -0.300 5.300 14 C -0.083 4.083 15 C 0.043 3.957 16 C 0.059 3.941 17 C -0.506 4.506 18 H 0.076 0.924 19 C 0.067 3.933 20 N -0.901 5.901 21 Si 0.876 3.124 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.264 1.264 25 N -0.251 5.251 26 N -0.077 5.077 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.139 0.861 36 H 0.410 0.590 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.184 0.816 40 H 0.038 0.962 41 H 0.031 0.969 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.406 -1.850 -27.868 32.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.124 4.124 3 C -0.110 4.110 4 C -0.121 4.121 5 C -0.150 4.150 6 C -0.124 4.124 7 C -0.137 4.137 8 C 0.055 3.945 9 N -0.319 5.319 10 C 0.284 3.716 11 O -0.348 6.348 12 C -0.019 4.019 13 N -0.096 5.096 14 C -0.230 4.230 15 C -0.093 4.093 16 C 0.020 3.980 17 C -0.544 4.544 18 H 0.095 0.905 19 C -0.134 4.134 20 N -0.540 5.540 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.189 1.189 25 N -0.119 5.119 26 N -0.056 5.056 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.157 0.843 36 H 0.247 0.753 37 H 0.151 0.849 38 H 0.144 0.856 39 H 0.201 0.799 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.437 -1.575 -28.464 32.419 hybrid contribution -1.785 0.544 1.038 2.135 sum -17.221 -1.031 -27.426 32.401 Atomic orbital electron populations 1.21785 0.94609 1.01992 1.02234 1.20509 0.96077 0.92464 1.03375 1.19669 1.03116 0.96129 0.92084 1.20833 0.99320 0.95100 0.96832 1.21142 1.00754 0.94949 0.98182 1.21086 0.99223 1.00157 0.91955 1.21342 0.99757 0.93032 0.99572 1.17505 1.00927 0.91748 0.84317 1.43373 1.35266 1.46120 1.07156 1.20687 0.81962 0.84131 0.84857 1.90858 1.29997 1.30316 1.83678 1.21558 0.95102 1.00516 0.84752 1.46559 1.06612 1.44354 1.12082 1.23275 1.02136 1.10119 0.87458 1.22486 0.87532 1.00612 0.98706 1.18161 0.98020 0.96686 0.85120 1.20918 1.27946 1.10624 0.94947 0.90544 1.24978 0.94954 0.96523 0.96920 1.69904 1.37353 1.38472 1.08250 0.86830 0.79338 0.84191 0.79287 1.20253 1.21239 1.18871 1.75142 1.26501 1.13002 0.97253 1.78359 0.89814 1.18582 1.18818 0.92913 0.92199 0.91992 0.90473 0.91049 0.85764 0.85961 0.85690 0.84306 0.75317 0.84895 0.85557 0.79892 0.94360 0.95094 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.82 37.16 0.36 -0.23 16 2 C -0.09 -0.47 5.47 -27.89 -0.15 -0.62 16 3 C -0.11 -0.86 5.15 -104.43 -0.54 -1.40 16 4 C -0.10 -0.78 9.68 -39.61 -0.38 -1.17 16 5 C -0.13 -1.07 10.04 -39.55 -0.40 -1.47 16 6 C -0.11 -1.02 10.04 -39.61 -0.40 -1.42 16 7 C -0.12 -1.34 8.71 -39.39 -0.34 -1.68 16 8 C 0.15 1.46 6.29 -83.70 -0.53 0.93 16 9 N -0.67 -5.36 4.78 -9.86 -0.05 -5.41 16 10 C 0.50 5.63 7.69 -10.99 -0.08 5.55 16 11 O -0.48 -7.95 13.09 5.55 0.07 -7.88 16 12 C 0.11 1.00 6.94 -5.19 -0.04 0.97 16 13 N -0.30 -4.93 3.20 -62.44 -0.20 -5.13 16 14 C -0.08 -1.44 11.49 -17.05 -0.20 -1.63 16 15 C 0.04 0.98 6.44 -82.78 -0.53 0.45 16 16 C 0.06 1.46 4.62 -29.03 -0.13 1.33 16 17 C -0.51 -14.93 9.64 -34.44 -0.33 -15.26 16 18 H 0.08 2.52 7.98 -52.49 -0.42 2.10 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -28.29 13.96 55.43 0.77 -27.51 16 21 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 25 N -0.25 -6.21 12.40 33.29 0.41 -5.80 16 26 N -0.08 -1.65 12.13 60.35 0.73 -0.91 16 27 H 0.05 0.19 7.29 -51.93 -0.38 -0.19 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 0.37 8.05 -51.93 -0.42 -0.05 16 31 H 0.07 0.37 7.43 -51.93 -0.39 -0.01 16 32 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 33 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.14 1.85 6.19 -52.49 -0.32 1.53 16 36 H 0.41 1.73 7.05 -40.82 -0.29 1.44 16 37 H 0.13 0.62 8.07 -51.93 -0.42 0.20 16 38 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.18 2.30 8.06 -52.49 -0.42 1.88 16 40 H 0.04 0.96 7.20 -51.93 -0.37 0.59 16 41 H 0.03 0.69 7.55 -51.93 -0.39 0.30 16 42 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 357.03 15.07 5.38 5.38 Total: -1.00 -39.64 357.03 -6.86 -46.49 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -5.53 Total: -2.30 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -3.79 Total: -13.77 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 1.67 Total: -44.77 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.07 Total: -7.88 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -39.64 -6.86 -46.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603175388.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.629 kcal (2) G-P(sol) polarization free energy of solvation -39.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds