Wall clock time and date at job start Tue Mar 31 2020 10:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47292 * 2 1 4 4 C 1.38136 * 120.03521 * 265.00343 * 3 2 1 5 5 C 1.38257 * 120.07185 * 180.02562 * 4 3 2 6 6 C 1.38308 * 120.14064 * 359.97438 * 5 4 3 7 7 C 1.38091 * 120.06867 * 359.97438 * 6 5 4 8 8 C 1.38847 * 120.03273 * 85.02263 * 3 2 1 9 9 N 1.39918 * 120.07159 * 0.02562 * 8 3 2 10 10 C 1.34780 * 119.99891 * 145.30624 * 9 8 3 11 11 O 1.21292 * 119.99936 * 4.49449 * 10 9 8 12 12 C 1.50696 * 119.99980 * 184.49910 * 10 9 8 13 13 N 1.46505 * 109.47420 * 179.97438 * 12 10 9 14 14 C 1.35313 * 125.86765 * 124.70654 * 13 12 10 15 15 C 1.35348 * 106.17437 * 179.90810 * 14 13 12 16 16 C 1.50703 * 126.75216 * 180.12758 * 15 14 13 17 17 C 1.50699 * 109.46786 * 125.25138 * 16 15 14 18 18 H 1.07995 * 120.00560 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99764 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00056 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99977 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46621 * 90.00384 * 21 19 17 23 23 H 1.48499 * 109.46965 * 210.00075 * 21 19 17 24 24 H 1.48497 * 109.46871 * 330.00346 * 21 19 17 25 25 N 1.33774 * 106.49446 * 0.35807 * 15 14 13 26 26 N 1.28632 * 108.88686 * 359.77242 * 25 15 14 27 27 H 1.09000 * 109.47253 * 299.99997 * 1 2 3 28 28 H 1.08996 * 109.47269 * 59.99953 * 1 2 3 29 29 H 1.09001 * 109.47547 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46792 * 239.99875 * 2 1 3 31 31 H 1.08996 * 109.47269 * 120.00047 * 2 1 3 32 32 H 1.08004 * 119.96579 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.92921 * 180.02562 * 5 4 3 34 34 H 1.07992 * 119.96457 * 180.02562 * 6 5 4 35 35 H 1.08002 * 120.03579 * 179.74291 * 7 6 5 36 36 H 0.97002 * 120.00468 * 325.30222 * 9 8 3 37 37 H 1.09001 * 109.47194 * 299.99432 * 12 10 9 38 38 H 1.09000 * 109.47692 * 59.99594 * 12 10 9 39 39 H 1.07999 * 126.91518 * 0.02562 * 14 13 12 40 40 H 1.08999 * 109.47122 * 245.24790 * 16 15 14 41 41 H 1.08998 * 109.47030 * 5.25050 * 16 15 14 42 42 H 0.97007 * 120.00313 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3610 2.0379 -1.1913 5 6 2.8225 3.3412 -1.1922 6 6 2.9561 4.0314 -0.0011 7 6 2.6282 3.4205 1.1931 8 6 2.1657 2.1107 1.1975 9 7 1.8345 1.4882 2.4060 10 6 2.5371 1.7662 3.5220 11 8 3.4027 2.6155 3.4979 12 6 2.2473 1.0218 4.7999 13 7 3.1386 1.5031 5.8583 14 6 2.7518 1.9900 7.0601 15 6 3.8886 2.3125 7.7199 16 6 3.9925 2.8938 9.1065 17 6 4.8898 2.0247 9.9495 18 1 5.3394 1.1398 9.5241 19 6 5.1358 2.3588 11.2644 20 7 5.9184 1.6002 12.0003 21 14 4.3575 3.8892 12.0006 22 1 3.0427 3.5385 12.5952 23 1 5.2470 4.4385 13.0551 24 1 4.1640 4.9068 10.9365 25 7 4.9017 2.0185 6.8973 26 7 4.4240 1.5409 5.8026 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.2574 1.5018 -2.1232 33 1 3.0784 3.8216 -2.1249 34 1 3.3164 5.0494 -0.0051 35 1 2.7366 3.9585 2.1233 36 1 1.0992 0.8565 2.4407 37 1 1.2110 1.1914 5.0922 38 1 2.4112 -0.0445 4.6444 39 1 1.7396 2.0976 7.4210 40 1 4.4102 3.8989 9.0487 41 1 3.0011 2.9376 9.5573 42 1 6.0918 1.8354 12.9253 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603175388.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:39 Heat of formation + Delta-G solvation = 65.130863 kcal Electronic energy + Delta-G solvation = -24761.534051 eV Core-core repulsion = 21128.928414 eV Total energy + Delta-G solvation = -3632.605637 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.10355 -41.78594 -39.75045 -36.16676 -36.01741 -34.98855 -34.81277 -33.14397 -31.38980 -30.41214 -29.90405 -28.86475 -25.13771 -24.80033 -24.49418 -22.94799 -22.26798 -21.83582 -21.22316 -19.07620 -18.92636 -18.52633 -17.84687 -17.20699 -16.77998 -16.57259 -16.28809 -15.89063 -15.60875 -15.34883 -15.02639 -14.87435 -14.60459 -14.48424 -14.28980 -14.10553 -13.94695 -13.57593 -13.11006 -12.87368 -12.76005 -12.63896 -12.44293 -12.33569 -11.93023 -11.92318 -11.85390 -11.63149 -11.53764 -11.40672 -11.24316 -10.75991 -10.70530 -9.86405 -9.72842 -9.15136 -8.23382 -6.28498 0.23061 0.41123 0.68944 1.27062 1.38155 1.40848 1.46226 1.57647 1.77578 1.97947 2.41843 2.80621 3.10581 3.28762 3.60433 3.79083 3.81591 3.89084 3.99951 4.15607 4.23228 4.29469 4.41217 4.43027 4.47789 4.55687 4.60541 4.69508 4.75103 5.03887 5.04925 5.12204 5.12811 5.31234 5.32678 5.36985 5.38636 5.43389 5.56007 5.59729 5.62541 5.73961 6.05739 6.24375 6.33663 6.76647 6.92960 7.33027 7.71252 8.94451 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.029424 B = 0.002401 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.388856 B =11659.131539 C =12075.128877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.105 4.105 4 C -0.106 4.106 5 C -0.132 4.132 6 C -0.123 4.123 7 C -0.144 4.144 8 C 0.131 3.869 9 N -0.648 5.648 10 C 0.498 3.502 11 O -0.542 6.542 12 C 0.096 3.904 13 N -0.284 5.284 14 C -0.042 4.042 15 C -0.011 4.011 16 C 0.067 3.933 17 C -0.517 4.517 18 H 0.018 0.982 19 C 0.001 3.999 20 N -0.955 5.955 21 Si 0.960 3.040 22 H -0.252 1.252 23 H -0.288 1.288 24 H -0.245 1.245 25 N -0.315 5.315 26 N -0.106 5.106 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.129 0.871 35 H 0.110 0.890 36 H 0.430 0.570 37 H 0.195 0.805 38 H 0.163 0.837 39 H 0.243 0.757 40 H 0.029 0.971 41 H 0.065 0.935 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.673 -2.139 -29.427 36.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.107 4.107 4 C -0.124 4.124 5 C -0.150 4.150 6 C -0.142 4.142 7 C -0.165 4.165 8 C 0.037 3.963 9 N -0.297 5.297 10 C 0.285 3.715 11 O -0.417 6.417 12 C -0.027 4.027 13 N -0.079 5.079 14 C -0.191 4.191 15 C -0.149 4.149 16 C 0.028 3.972 17 C -0.555 4.555 18 H 0.036 0.964 19 C -0.195 4.195 20 N -0.596 5.596 21 Si 0.781 3.219 22 H -0.176 1.176 23 H -0.214 1.214 24 H -0.169 1.169 25 N -0.181 5.181 26 N -0.085 5.085 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.169 0.831 33 H 0.163 0.837 34 H 0.147 0.853 35 H 0.128 0.872 36 H 0.271 0.729 37 H 0.212 0.788 38 H 0.180 0.820 39 H 0.259 0.741 40 H 0.047 0.953 41 H 0.083 0.917 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.753 -1.919 -30.106 36.059 hybrid contribution -0.494 0.507 1.309 1.488 sum -20.248 -1.412 -28.797 35.231 Atomic orbital electron populations 1.21775 0.93287 1.02932 1.02359 1.20588 0.97103 0.90544 1.04088 1.20008 1.02002 0.97326 0.91373 1.21245 0.98257 0.94992 0.97890 1.21447 0.99928 0.95327 0.98343 1.21256 0.99858 1.00774 0.92284 1.21290 1.01817 0.94316 0.99045 1.17648 1.01661 0.91508 0.85491 1.43135 1.35065 1.45586 1.05905 1.21046 0.81169 0.83321 0.85994 1.90866 1.32908 1.33229 1.84660 1.22333 0.96586 1.01759 0.82014 1.46989 1.05925 1.41830 1.13185 1.23909 1.02828 1.05926 0.86442 1.22470 0.89511 1.04092 0.98814 1.17978 0.98163 0.95090 0.85982 1.21125 1.28749 1.09723 0.95950 0.96386 1.26090 0.95461 1.00704 0.97255 1.70092 1.39469 1.41157 1.08886 0.85533 0.78917 0.79021 0.78388 1.17581 1.21415 1.16875 1.75041 1.29082 1.15192 0.98835 1.78214 0.92423 1.19841 1.17976 0.92462 0.92498 0.90620 0.89522 0.90661 0.83062 0.83690 0.85305 0.87178 0.72900 0.78770 0.81988 0.74051 0.95270 0.91720 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.82 71.98 0.71 0.04 16 2 C -0.09 -0.66 5.47 29.85 0.16 -0.50 16 3 C -0.10 -1.47 5.15 -19.74 -0.10 -1.57 16 4 C -0.11 -1.38 9.68 22.25 0.22 -1.17 16 5 C -0.13 -1.99 10.04 22.29 0.22 -1.77 16 6 C -0.12 -2.45 10.04 22.25 0.22 -2.23 16 7 C -0.14 -3.45 8.71 22.39 0.19 -3.26 16 8 C 0.13 2.46 6.29 38.15 0.24 2.70 16 9 N -0.65 -9.00 4.78 -303.50 -1.45 -10.45 16 10 C 0.50 10.48 7.69 87.66 0.67 11.15 16 11 O -0.54 -18.50 13.09 -3.07 -0.04 -18.54 16 12 C 0.10 1.42 6.94 85.63 0.59 2.01 16 13 N -0.28 -8.75 3.20 -351.46 -1.12 -9.87 16 14 C -0.04 -1.33 11.49 83.49 0.96 -0.37 16 15 C -0.01 -0.51 6.44 41.60 0.27 -0.24 16 16 C 0.07 3.29 4.62 29.10 0.13 3.42 16 17 C -0.52 -31.70 9.64 25.60 0.25 -31.45 16 18 H 0.02 1.26 7.98 -2.91 -0.02 1.24 16 19 C 0.00 0.05 5.47 84.66 0.46 0.52 16 20 N -0.96 -62.26 13.96 21.45 0.30 -61.96 16 21 Si 0.96 44.26 27.47 68.60 1.88 46.15 16 22 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16 23 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.25 -10.50 6.54 99.48 0.65 -9.85 16 25 N -0.31 -16.27 12.40 -48.60 -0.60 -16.88 16 26 N -0.11 -4.62 12.13 37.02 0.45 -4.17 16 27 H 0.06 0.21 7.29 -2.39 -0.02 0.19 16 28 H 0.06 0.31 8.14 -2.39 -0.02 0.30 16 29 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.09 0.53 8.05 -2.38 -0.02 0.52 16 31 H 0.07 0.53 7.43 -2.39 -0.02 0.52 16 32 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 33 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 34 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 35 H 0.11 3.23 6.19 -2.91 -0.02 3.22 16 36 H 0.43 2.08 7.05 -92.71 -0.65 1.42 16 37 H 0.20 0.49 8.07 -2.39 -0.02 0.47 16 38 H 0.16 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.24 4.52 8.06 -2.91 -0.02 4.50 16 40 H 0.03 1.46 7.20 -2.39 -0.02 1.45 16 41 H 0.06 2.71 7.55 -2.39 -0.02 2.69 16 42 H 0.27 16.06 8.31 -92.70 -0.77 15.29 16 Total: -1.00 -97.63 357.03 4.96 -92.67 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 0.34 Total: 5.76 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 5.21 Total: -22.71 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -2.43 Total: -103.33 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.04 Total: -18.54 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.15 kcal Total: -97.63 4.96 -92.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603175388.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.804 kcal (2) G-P(sol) polarization free energy of solvation -97.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds