Wall clock time and date at job start Tue Mar 31 2020 11:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47113 * 2 1 4 4 C 1.52999 * 109.47101 * 239.99877 * 2 1 3 5 5 C 1.50704 * 109.47268 * 119.99924 * 2 1 3 6 6 C 1.39667 * 126.06336 * 75.00197 * 5 2 1 7 7 C 1.38440 * 105.35053 * 180.02562 * 6 5 2 8 8 C 1.47119 * 126.88300 * 179.97438 * 7 6 5 9 9 O 1.21631 * 119.99949 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99676 * 179.97438 * 8 7 6 11 11 C 1.39368 * 119.99547 * 174.91659 * 10 8 7 12 12 C 1.38626 * 119.57781 * 174.64341 * 11 10 8 13 13 C 1.40801 * 118.79054 * 179.97438 * 12 11 10 14 14 C 1.41544 * 120.99637 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00622 * 206.26121 * 14 13 12 16 16 C 1.40030 * 119.99735 * 26.26877 * 14 13 12 17 17 N 1.30748 * 120.00496 * 9.84449 * 16 14 13 18 18 Si 1.86805 * 119.99996 * 189.84998 * 16 14 13 19 19 H 1.48498 * 109.47177 * 59.99515 * 18 16 14 20 20 H 1.48499 * 109.47390 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46911 * 299.99679 * 18 16 14 22 22 C 1.41174 * 118.01218 * 0.02562 * 13 12 11 23 23 C 1.37586 * 119.02209 * 0.02562 * 22 13 12 24 24 N 1.32092 * 121.11072 * 359.97438 * 23 22 13 25 25 N 1.36602 * 106.22760 * 0.22109 * 7 6 5 26 26 H 0.97001 * 125.19360 * 179.74076 * 25 7 6 27 27 N 1.28445 * 109.62081 * 359.62092 * 25 7 6 28 28 H 1.08994 * 109.47107 * 299.99884 * 1 2 3 29 29 H 1.09005 * 109.46950 * 60.00218 * 1 2 3 30 30 H 1.09001 * 109.46770 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47239 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47034 * 299.99730 * 3 2 1 33 33 H 1.08994 * 109.47039 * 60.00074 * 3 2 1 34 34 H 1.09001 * 109.47550 * 299.99818 * 4 2 1 35 35 H 1.08997 * 109.47176 * 60.00362 * 4 2 1 36 36 H 1.09001 * 109.47233 * 179.97438 * 4 2 1 37 37 H 1.07995 * 127.32691 * 0.04026 * 6 5 2 38 38 H 0.96997 * 120.00223 * 354.90723 * 10 8 7 39 39 H 1.08003 * 120.60885 * 0.02562 * 12 11 10 40 40 H 0.96994 * 120.00120 * 179.97438 * 17 16 14 41 41 H 1.08007 * 120.49370 * 179.97438 * 22 13 12 42 42 H 1.08001 * 119.45049 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 2.0310 -2.0911 1.4409 7 6 2.5816 -2.2708 2.6983 8 6 2.8026 -3.5498 3.3910 9 8 2.4885 -4.5947 2.8534 10 7 3.3531 -3.5636 4.6211 11 6 3.4654 -4.7636 5.3208 12 6 4.1322 -4.7874 6.5359 13 6 4.2354 -6.0087 7.2290 14 6 4.9064 -6.0865 8.4728 15 1 5.3501 -7.0188 8.7897 16 6 4.9948 -4.9547 9.2926 17 7 4.3001 -3.8845 9.0069 18 14 6.1055 -4.9737 10.7945 19 1 7.5072 -5.2201 10.3705 20 1 6.0218 -3.6637 11.4887 21 1 5.6708 -6.0525 11.7179 22 6 3.6504 -7.1535 6.6457 23 6 3.0093 -7.0320 5.4344 24 7 2.9343 -5.8673 4.8157 25 7 2.8733 -1.0221 3.1693 26 1 3.2685 -0.8289 4.0338 27 7 2.5468 -0.1430 2.2916 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2495 37 1 1.6761 -2.8560 0.7661 38 1 3.6713 -2.7383 5.0193 39 1 4.5641 -3.8855 6.9439 40 1 4.3611 -3.1008 9.5750 41 1 3.7060 -8.1109 7.1426 42 1 2.5597 -7.9034 4.9818 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610791338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:43 Heat of formation + Delta-G solvation = 60.861028 kcal Electronic energy + Delta-G solvation = -25022.962983 eV Core-core repulsion = 21390.172192 eV Total energy + Delta-G solvation = -3632.790791 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.58850 -39.55767 -37.79900 -37.02890 -34.50961 -33.90037 -31.01989 -30.96477 -30.54217 -28.60867 -27.38447 -27.35530 -26.09932 -23.78986 -22.79845 -22.06949 -21.12796 -20.27092 -18.82991 -18.50295 -17.76175 -16.19249 -15.75420 -15.57315 -15.36101 -15.01397 -14.48253 -14.29301 -14.22794 -13.99884 -13.93735 -13.69498 -13.42756 -12.90333 -12.67933 -12.45989 -12.38608 -12.29081 -11.78472 -11.51229 -11.42697 -11.27153 -11.21447 -11.14130 -10.99737 -10.62094 -10.38902 -10.25390 -9.93580 -9.70416 -9.48702 -9.17389 -9.04681 -8.09157 -7.87803 -7.17860 -6.84852 -4.72123 1.34230 2.49426 2.66079 2.73162 2.79009 2.95739 2.98556 3.16471 3.32429 3.65088 3.78691 4.29649 4.60025 4.61437 4.81453 4.86635 5.05795 5.21915 5.45159 5.49134 5.53459 5.57036 5.64973 5.67333 5.76971 5.78422 5.87554 5.94615 6.02872 6.17999 6.21859 6.40820 6.46880 6.50676 6.69695 6.83033 6.94372 7.02668 7.24919 7.33645 7.61280 7.80682 7.98440 8.05329 8.29526 8.55891 8.65239 8.68654 9.54623 10.00641 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.022378 B = 0.002791 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.932711 B =10028.701361 C =11039.572848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.018 3.982 3 C -0.134 4.134 4 C -0.139 4.139 5 C 0.036 3.964 6 C -0.154 4.154 7 C -0.025 4.025 8 C 0.573 3.427 9 O -0.460 6.460 10 N -0.654 5.654 11 C 0.334 3.666 12 C -0.236 4.236 13 C 0.142 3.858 14 C -0.452 4.452 15 H 0.082 0.918 16 C 0.075 3.925 17 N -0.796 5.796 18 Si 0.916 3.084 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.264 1.264 22 C -0.279 4.279 23 C 0.119 3.881 24 N -0.554 5.554 25 N -0.381 5.381 26 H 0.444 0.556 27 N -0.270 5.270 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.162 0.838 38 H 0.403 0.597 39 H 0.133 0.867 40 H 0.282 0.718 41 H 0.104 0.896 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.655 10.366 -11.393 15.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.016 3.984 3 C -0.192 4.192 4 C -0.197 4.197 5 C -0.122 4.122 6 C -0.183 4.183 7 C -0.153 4.153 8 C 0.356 3.644 9 O -0.327 6.327 10 N -0.300 5.300 11 C 0.109 3.891 12 C -0.262 4.262 13 C 0.133 3.867 14 C -0.484 4.484 15 H 0.100 0.900 16 C -0.143 4.143 17 N -0.422 5.422 18 Si 0.740 3.260 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.188 1.188 22 C -0.303 4.303 23 C -0.035 4.035 24 N -0.273 5.273 25 N -0.097 5.097 26 H 0.289 0.711 27 N -0.103 5.103 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.179 0.821 38 H 0.237 0.763 39 H 0.151 0.849 40 H 0.093 0.907 41 H 0.122 0.878 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.137 10.898 -12.108 16.589 hybrid contribution 1.083 -0.235 2.144 2.414 sum -2.054 10.663 -9.963 14.738 Atomic orbital electron populations 1.21873 0.93376 1.02416 1.01929 1.18886 0.95360 0.94728 0.89425 1.21765 1.01272 0.94361 1.01776 1.21883 1.01401 1.00587 0.95850 1.21858 1.03218 0.91641 0.95505 1.21940 1.04470 0.96399 0.95471 1.22065 1.09107 0.86523 0.97648 1.17093 0.79352 0.86681 0.81290 1.90921 1.46883 1.30824 1.64078 1.43254 1.60593 1.09646 1.16462 1.18096 0.96219 0.85097 0.89658 1.21668 1.08615 1.01566 0.94321 1.17584 0.87531 0.90012 0.91542 1.19567 1.30821 0.96981 1.01012 0.89966 1.25961 0.94192 0.94566 0.99564 1.69719 1.32078 1.03653 1.36756 0.86233 0.80903 0.78470 0.80381 1.18738 1.20230 1.18826 1.21954 1.08789 0.99570 0.99950 1.21770 0.96190 0.93522 0.92036 1.67159 1.26214 0.97915 1.36012 1.43650 1.46631 1.03026 1.16405 0.71108 1.73034 1.17079 1.20018 1.00157 0.92494 0.92011 0.92124 0.92522 0.92559 0.92040 0.91980 0.91991 0.92390 0.82066 0.76299 0.84897 0.90697 0.87770 0.85637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.46 37.16 0.31 -0.89 16 2 C 0.02 0.17 0.96 -155.66 -0.15 0.02 16 3 C -0.13 -1.20 8.04 37.16 0.30 -0.90 16 4 C -0.14 -1.18 8.20 37.16 0.30 -0.88 16 5 C 0.04 0.46 5.65 -82.47 -0.47 -0.01 16 6 C -0.15 -2.18 10.13 -38.97 -0.39 -2.57 16 7 C -0.02 -0.38 7.15 -82.06 -0.59 -0.96 16 8 C 0.57 10.90 7.75 -12.66 -0.10 10.81 16 9 O -0.46 -10.51 15.20 5.25 0.08 -10.43 16 10 N -0.65 -12.44 5.38 -12.56 -0.07 -12.50 16 11 C 0.33 7.87 7.40 -154.78 -1.15 6.72 16 12 C -0.24 -5.80 8.61 -38.47 -0.33 -6.13 16 13 C 0.14 3.62 5.60 -106.55 -0.60 3.03 16 14 C -0.45 -11.30 9.14 -37.65 -0.34 -11.65 16 15 H 0.08 1.96 7.87 -52.49 -0.41 1.55 16 16 C 0.08 1.76 5.31 -17.34 -0.09 1.67 16 17 N -0.80 -18.95 10.70 55.55 0.59 -18.35 16 18 Si 0.92 17.51 29.57 -169.99 -5.03 12.48 16 19 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 20 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 21 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 22 C -0.28 -6.66 9.90 -38.71 -0.38 -7.04 16 23 C 0.12 2.79 11.15 -17.68 -0.20 2.59 16 24 N -0.55 -13.83 7.88 -12.54 -0.10 -13.93 16 25 N -0.38 -4.86 6.85 33.48 0.23 -4.63 16 26 H 0.44 4.39 8.24 -190.45 -1.57 2.82 16 27 N -0.27 -3.56 11.48 33.64 0.39 -3.18 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 34 H 0.06 0.53 7.60 -51.93 -0.39 0.13 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.16 2.15 7.79 -52.49 -0.41 1.74 16 38 H 0.40 6.12 7.89 -40.82 -0.32 5.79 16 39 H 0.13 3.22 6.11 -52.48 -0.32 2.90 16 40 H 0.28 6.10 8.29 -40.82 -0.34 5.76 16 41 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 42 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 LS Contribution 356.81 15.07 5.38 5.38 Total: -1.00 -30.89 356.81 -9.18 -40.07 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -6.79 Total: 11.28 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -3.87 Total: -6.20 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 1.04 Total: -52.58 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.89 -9.18 -40.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610791338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.934 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds