Wall clock time and date at job start Tue Mar 31 2020 11:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47113 * 2 1 4 4 C 1.52999 * 109.47101 * 239.99877 * 2 1 3 5 5 C 1.50704 * 109.47268 * 119.99924 * 2 1 3 6 6 C 1.39667 * 126.06336 * 75.00197 * 5 2 1 7 7 C 1.38440 * 105.35053 * 180.02562 * 6 5 2 8 8 C 1.47119 * 126.88300 * 179.97438 * 7 6 5 9 9 O 1.21631 * 119.99949 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99676 * 179.97438 * 8 7 6 11 11 C 1.39368 * 119.99547 * 174.91659 * 10 8 7 12 12 C 1.38626 * 119.57781 * 174.64341 * 11 10 8 13 13 C 1.40801 * 118.79054 * 179.97438 * 12 11 10 14 14 C 1.41544 * 120.99637 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00622 * 206.26121 * 14 13 12 16 16 C 1.40030 * 119.99735 * 26.26877 * 14 13 12 17 17 N 1.30748 * 120.00496 * 9.84449 * 16 14 13 18 18 Si 1.86805 * 119.99996 * 189.84998 * 16 14 13 19 19 H 1.48498 * 109.47177 * 59.99515 * 18 16 14 20 20 H 1.48499 * 109.47390 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46911 * 299.99679 * 18 16 14 22 22 C 1.41174 * 118.01218 * 0.02562 * 13 12 11 23 23 C 1.37586 * 119.02209 * 0.02562 * 22 13 12 24 24 N 1.32092 * 121.11072 * 359.97438 * 23 22 13 25 25 N 1.36602 * 106.22760 * 0.22109 * 7 6 5 26 26 H 0.97001 * 125.19360 * 179.74076 * 25 7 6 27 27 N 1.28445 * 109.62081 * 359.62092 * 25 7 6 28 28 H 1.08994 * 109.47107 * 299.99884 * 1 2 3 29 29 H 1.09005 * 109.46950 * 60.00218 * 1 2 3 30 30 H 1.09001 * 109.46770 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47239 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47034 * 299.99730 * 3 2 1 33 33 H 1.08994 * 109.47039 * 60.00074 * 3 2 1 34 34 H 1.09001 * 109.47550 * 299.99818 * 4 2 1 35 35 H 1.08997 * 109.47176 * 60.00362 * 4 2 1 36 36 H 1.09001 * 109.47233 * 179.97438 * 4 2 1 37 37 H 1.07995 * 127.32691 * 0.04026 * 6 5 2 38 38 H 0.96997 * 120.00223 * 354.90723 * 10 8 7 39 39 H 1.08003 * 120.60885 * 0.02562 * 12 11 10 40 40 H 0.96994 * 120.00120 * 179.97438 * 17 16 14 41 41 H 1.08007 * 120.49370 * 179.97438 * 22 13 12 42 42 H 1.08001 * 119.45049 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 2.0310 -2.0911 1.4409 7 6 2.5816 -2.2708 2.6983 8 6 2.8026 -3.5498 3.3910 9 8 2.4885 -4.5947 2.8534 10 7 3.3531 -3.5636 4.6211 11 6 3.4654 -4.7636 5.3208 12 6 4.1322 -4.7874 6.5359 13 6 4.2354 -6.0087 7.2290 14 6 4.9064 -6.0865 8.4728 15 1 5.3501 -7.0188 8.7897 16 6 4.9948 -4.9547 9.2926 17 7 4.3001 -3.8845 9.0069 18 14 6.1055 -4.9737 10.7945 19 1 7.5072 -5.2201 10.3705 20 1 6.0218 -3.6637 11.4887 21 1 5.6708 -6.0525 11.7179 22 6 3.6504 -7.1535 6.6457 23 6 3.0093 -7.0320 5.4344 24 7 2.9343 -5.8673 4.8157 25 7 2.8733 -1.0221 3.1693 26 1 3.2685 -0.8289 4.0338 27 7 2.5468 -0.1430 2.2916 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2495 37 1 1.6761 -2.8560 0.7661 38 1 3.6713 -2.7383 5.0193 39 1 4.5641 -3.8855 6.9439 40 1 4.3611 -3.1008 9.5750 41 1 3.7060 -8.1109 7.1426 42 1 2.5597 -7.9034 4.9818 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610791338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:42 Heat of formation + Delta-G solvation = 42.766053 kcal Electronic energy + Delta-G solvation = -25023.747640 eV Core-core repulsion = 21390.172192 eV Total energy + Delta-G solvation = -3633.575448 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.69548 -41.21685 -39.51846 -37.83678 -36.24257 -35.64260 -32.56816 -32.13678 -32.01189 -30.26553 -28.10575 -28.04657 -27.95291 -25.21918 -23.89652 -23.78628 -22.63462 -21.66092 -20.23668 -19.64951 -19.31723 -17.83896 -17.15023 -16.94964 -16.83841 -16.13418 -16.06617 -15.87092 -15.68672 -15.36720 -14.86174 -14.74146 -14.65943 -14.40612 -14.34273 -14.20784 -13.21523 -13.06831 -12.93850 -12.89308 -12.72157 -12.48549 -12.38181 -12.14550 -12.01015 -11.94555 -11.86835 -11.64576 -11.51084 -11.28843 -11.22744 -10.25835 -10.17236 -9.97764 -9.72280 -8.96912 -8.62774 -6.61235 0.03438 0.84191 0.96965 1.40564 1.49396 1.51351 1.57339 1.69516 1.87094 2.15478 2.18910 2.79827 3.30562 3.49272 3.69410 3.80568 4.05892 4.14820 4.23636 4.35885 4.45079 4.65580 4.70305 4.73324 4.86858 4.87400 4.89137 4.97793 5.01701 5.09608 5.10379 5.16492 5.20856 5.27973 5.41701 5.48035 5.49832 5.51000 5.53181 5.84399 5.92421 6.07700 6.34112 6.48344 6.74014 6.80288 6.89743 7.04161 7.72756 8.25512 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.022378 B = 0.002791 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.932711 B =10028.701361 C =11039.572848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.015 3.985 3 C -0.131 4.131 4 C -0.138 4.138 5 C 0.037 3.963 6 C -0.153 4.153 7 C -0.041 4.041 8 C 0.578 3.422 9 O -0.503 6.503 10 N -0.646 5.646 11 C 0.331 3.669 12 C -0.252 4.252 13 C 0.112 3.888 14 C -0.481 4.481 15 H 0.085 0.915 16 C 0.038 3.962 17 N -0.816 5.816 18 Si 0.989 3.011 19 H -0.260 1.260 20 H -0.266 1.266 21 H -0.261 1.261 22 C -0.292 4.292 23 C 0.114 3.886 24 N -0.579 5.579 25 N -0.369 5.369 26 H 0.455 0.545 27 N -0.269 5.269 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.166 0.834 38 H 0.419 0.581 39 H 0.131 0.869 40 H 0.292 0.708 41 H 0.119 0.881 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.550 11.882 -11.658 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.013 3.987 3 C -0.188 4.188 4 C -0.196 4.196 5 C -0.121 4.121 6 C -0.182 4.182 7 C -0.169 4.169 8 C 0.363 3.637 9 O -0.373 6.373 10 N -0.292 5.292 11 C 0.105 3.895 12 C -0.277 4.277 13 C 0.104 3.896 14 C -0.512 4.512 15 H 0.103 0.897 16 C -0.179 4.179 17 N -0.442 5.442 18 Si 0.809 3.191 19 H -0.184 1.184 20 H -0.191 1.191 21 H -0.185 1.185 22 C -0.315 4.315 23 C -0.040 4.040 24 N -0.298 5.298 25 N -0.087 5.087 26 H 0.302 0.698 27 N -0.102 5.102 28 H 0.067 0.933 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.184 0.816 38 H 0.256 0.744 39 H 0.149 0.851 40 H 0.103 0.897 41 H 0.137 0.863 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.031 12.456 -12.368 17.813 hybrid contribution 1.008 -0.646 2.176 2.483 sum -2.023 11.809 -10.193 15.730 Atomic orbital electron populations 1.21869 0.92451 1.02387 1.02678 1.19082 0.96053 0.95057 0.88502 1.21743 1.00772 0.93814 1.02499 1.21887 1.00976 1.00635 0.96073 1.22366 1.02402 0.91107 0.96218 1.22160 1.03629 0.97404 0.94996 1.21526 1.11358 0.85878 0.98177 1.17442 0.78006 0.87471 0.80758 1.90888 1.48638 1.32733 1.65019 1.43184 1.60449 1.09108 1.16508 1.18306 0.95363 0.86089 0.89702 1.21656 1.09747 1.01404 0.94938 1.18024 0.88222 0.91011 0.92374 1.19861 1.31753 0.98066 1.01500 0.89712 1.26805 0.95095 0.93725 1.02270 1.69753 1.32355 1.04221 1.37908 0.85137 0.78638 0.78859 0.76437 1.18421 1.19055 1.18515 1.22145 1.09086 0.99909 1.00399 1.22234 0.95718 0.94114 0.91927 1.67281 1.27161 0.98692 1.36709 1.43661 1.46158 1.01985 1.16868 0.69765 1.73065 1.16867 1.19878 1.00382 0.93342 0.89690 0.92566 0.93259 0.90298 0.92886 0.92234 0.89742 0.93073 0.81605 0.74382 0.85106 0.89710 0.86322 0.82957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.46 71.98 0.61 -1.48 16 2 C 0.01 0.26 0.96 -52.93 -0.05 0.21 16 3 C -0.13 -2.05 8.04 71.98 0.58 -1.47 16 4 C -0.14 -2.05 8.20 71.98 0.59 -1.46 16 5 C 0.04 0.89 5.65 43.05 0.24 1.13 16 6 C -0.15 -4.22 10.13 22.66 0.23 -3.99 16 7 C -0.04 -1.23 7.15 40.78 0.29 -0.94 16 8 C 0.58 22.28 7.75 86.57 0.67 22.95 16 9 O -0.50 -23.46 15.20 -4.13 -0.06 -23.52 16 10 N -0.65 -24.91 5.38 -311.90 -1.68 -26.59 16 11 C 0.33 15.92 7.40 132.79 0.98 16.90 16 12 C -0.25 -12.65 8.61 22.99 0.20 -12.45 16 13 C 0.11 5.85 5.60 -21.12 -0.12 5.73 16 14 C -0.48 -24.29 9.14 23.52 0.21 -24.07 16 15 H 0.08 4.08 7.87 -2.91 -0.02 4.06 16 16 C 0.04 1.74 5.31 85.29 0.45 2.19 16 17 N -0.82 -38.74 10.70 21.84 0.23 -38.51 16 18 Si 0.99 35.10 29.57 68.60 2.03 37.13 16 19 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 20 H -0.27 -8.90 7.11 99.48 0.71 -8.19 16 21 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 22 C -0.29 -14.15 9.90 22.84 0.23 -13.93 16 23 C 0.11 5.38 11.15 84.50 0.94 6.32 16 24 N -0.58 -29.39 7.88 -193.58 -1.53 -30.92 16 25 N -0.37 -9.08 6.85 -48.00 -0.33 -9.41 16 26 H 0.46 8.59 8.24 -220.00 -1.81 6.78 16 27 N -0.27 -6.74 11.48 -47.49 -0.55 -7.29 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.05 0.92 8.08 -2.39 -0.02 0.90 16 34 H 0.06 0.91 7.60 -2.39 -0.02 0.90 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.17 4.36 7.79 -2.91 -0.02 4.34 16 38 H 0.42 12.82 7.89 -92.71 -0.73 12.08 16 39 H 0.13 6.48 6.11 -2.91 -0.02 6.46 16 40 H 0.29 12.40 8.29 -92.71 -0.77 11.63 16 41 H 0.12 5.22 8.06 -2.91 -0.02 5.20 16 42 H 0.15 6.15 8.06 -2.91 -0.02 6.13 16 Total: -1.00 -66.67 356.81 2.71 -63.97 By element: Atomic # 1 Polarization: 40.96 SS G_CDS: -1.48 Total: 39.48 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 6.06 Total: -4.35 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -3.84 Total: -112.71 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.06 Total: -23.52 kcal Atomic # 14 Polarization: 35.10 SS G_CDS: 2.03 Total: 37.13 kcal Total: -66.67 2.71 -63.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610791338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.733 kcal (2) G-P(sol) polarization free energy of solvation -66.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds