Wall clock time and date at job start Tue Mar 31 2020 11:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47322 * 2 1 4 4 C 1.53001 * 109.47107 * 120.00182 * 2 1 3 5 5 C 1.52995 * 109.47226 * 65.00095 * 4 2 1 6 6 N 1.46501 * 109.47472 * 179.97438 * 5 4 2 7 7 C 1.46497 * 120.00300 * 270.00443 * 6 5 4 8 8 C 1.50707 * 109.46907 * 269.99281 * 7 6 5 9 9 H 1.07996 * 119.99528 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99813 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00106 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99933 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.46931 * 60.00066 * 12 10 8 14 14 H 1.48496 * 109.47297 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47081 * 300.00318 * 12 10 8 16 16 C 1.34784 * 119.99392 * 89.99586 * 6 5 4 17 17 O 1.21280 * 119.99668 * 180.02562 * 16 6 5 18 18 C 1.50703 * 120.00276 * 0.02562 * 16 6 5 19 19 N 1.46491 * 109.46899 * 179.97438 * 18 16 6 20 20 C 1.44545 * 120.61733 * 269.99881 * 19 18 16 21 21 C 1.53419 * 111.71899 * 180.02562 * 20 19 18 22 22 S 1.82066 * 103.93828 * 359.78517 * 21 20 19 23 23 C 1.33005 * 120.61505 * 90.02440 * 19 18 16 24 24 O 1.21623 * 125.19972 * 359.93640 * 23 19 18 25 25 H 1.09001 * 109.46627 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47134 * 299.99664 * 1 2 3 27 27 H 1.08997 * 109.47132 * 60.00234 * 1 2 3 28 28 H 1.08998 * 109.47134 * 240.00336 * 2 1 3 29 29 H 1.08995 * 109.47322 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46972 * 300.00722 * 3 2 1 31 31 H 1.08998 * 109.46742 * 60.00096 * 3 2 1 32 32 H 1.08999 * 109.47366 * 304.99597 * 4 2 1 33 33 H 1.09003 * 109.46799 * 185.00127 * 4 2 1 34 34 H 1.09002 * 109.47441 * 60.00022 * 5 4 2 35 35 H 1.09002 * 109.47388 * 300.00283 * 5 4 2 36 36 H 1.08996 * 109.47063 * 29.99437 * 7 6 5 37 37 H 1.08999 * 109.46976 * 149.99578 * 7 6 5 38 38 H 0.97004 * 120.00023 * 180.02562 * 11 10 8 39 39 H 1.08992 * 109.46878 * 59.99172 * 18 16 6 40 40 H 1.09007 * 109.46441 * 299.99463 * 18 16 6 41 41 H 1.09002 * 109.03281 * 300.61906 * 20 19 18 42 42 H 1.08999 * 109.04019 * 59.42901 * 20 19 18 43 43 H 1.09006 * 110.53710 * 118.61245 * 21 20 19 44 44 H 1.08995 * 110.53947 * 241.24259 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 7 2.1241 -2.8863 2.3838 7 6 3.4524 -3.5042 2.3813 8 6 3.3415 -4.9314 1.9100 9 1 2.3781 -5.3373 1.6390 10 6 4.4701 -5.7188 1.8248 11 7 5.6432 -5.2247 2.1552 12 14 4.3329 -7.4876 1.2399 13 1 3.7735 -7.5122 -0.1356 14 1 5.6792 -8.1141 1.2375 15 1 3.4367 -8.2425 2.1522 16 6 1.3517 -2.9532 3.4863 17 8 1.7565 -3.5247 4.4765 18 6 -0.0148 -2.3178 3.4888 19 7 -0.6486 -2.5279 4.7927 20 6 -1.4625 -3.6974 5.0358 21 6 -2.0242 -3.7114 6.4634 22 16 -1.3661 -2.1861 7.2086 23 6 -0.4861 -1.6456 5.7747 24 8 0.1718 -0.6255 5.6990 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -0.2618 2.1370 33 1 3.1263 -0.6443 1.2951 34 1 2.0699 -2.6550 0.3002 35 1 0.5489 -2.2725 1.1419 36 1 4.1095 -2.9502 1.7110 37 1 3.8635 -3.4858 3.3906 38 1 6.4373 -5.7786 2.0949 39 1 -0.6277 -2.7714 2.7099 40 1 0.0813 -1.2487 3.2990 41 1 -2.2910 -3.7074 4.3275 42 1 -0.8564 -4.5904 4.8834 43 1 -3.1140 -3.6928 6.4457 44 1 -1.6666 -4.5861 7.0065 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728870944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:33 Heat of formation + Delta-G solvation = -97.994960 kcal Electronic energy + Delta-G solvation = -25070.168322 eV Core-core repulsion = 21533.640219 eV Total energy + Delta-G solvation = -3536.528103 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.62667 -40.18578 -38.10032 -37.68700 -36.10582 -34.70509 -32.68529 -30.70909 -29.73699 -28.31494 -27.91764 -25.87307 -24.92583 -24.36536 -22.24678 -20.86026 -20.11813 -19.30084 -18.68911 -18.41210 -18.02401 -17.11995 -16.82505 -16.31915 -16.14238 -15.95771 -15.46122 -15.27826 -15.19476 -14.89194 -14.62399 -14.43465 -14.30939 -13.84597 -13.79873 -13.44201 -13.14310 -13.07987 -13.05122 -12.82773 -12.72056 -12.54933 -12.25384 -12.17307 -11.99120 -11.93316 -11.57700 -11.47523 -11.42771 -11.12307 -11.05595 -10.65015 -10.16986 -9.47423 -9.27528 -8.22599 -6.38307 -0.00753 0.87032 1.03021 1.37046 1.41376 1.48840 1.70150 1.90611 2.30734 2.45359 3.07278 3.27610 3.51414 3.86396 3.89480 3.94663 4.04069 4.12427 4.18456 4.28845 4.43327 4.56661 4.58602 4.68150 4.69957 4.81180 4.83690 4.88447 4.92861 4.99553 5.10159 5.16022 5.17159 5.22803 5.36292 5.50343 5.53597 5.60128 5.74924 5.81207 6.03622 6.39595 6.66383 6.73609 7.24822 7.39732 8.84883 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.008785 B = 0.005214 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.526838 B = 5369.098966 C = 7733.682975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.147 4.147 4 C -0.128 4.128 5 C 0.107 3.893 6 N -0.597 5.597 7 C 0.264 3.736 8 C -0.538 4.538 9 H 0.061 0.939 10 C 0.005 3.995 11 N -0.932 5.932 12 Si 0.971 3.029 13 H -0.257 1.257 14 H -0.283 1.283 15 H -0.274 1.274 16 C 0.479 3.521 17 O -0.590 6.590 18 C 0.109 3.891 19 N -0.588 5.588 20 C 0.088 3.912 21 C -0.079 4.079 22 S -0.201 6.201 23 C 0.534 3.466 24 O -0.538 6.538 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.018 0.982 37 H -0.012 1.012 38 H 0.266 0.734 39 H 0.160 0.840 40 H 0.119 0.881 41 H 0.139 0.861 42 H 0.082 0.918 43 H 0.162 0.838 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.969 5.832 -3.099 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.204 4.204 4 C -0.167 4.167 5 C -0.015 4.015 6 N -0.328 5.328 7 C 0.143 3.857 8 C -0.577 4.577 9 H 0.080 0.920 10 C -0.194 4.194 11 N -0.572 5.572 12 Si 0.795 3.205 13 H -0.181 1.181 14 H -0.208 1.208 15 H -0.200 1.200 16 C 0.266 3.734 17 O -0.470 6.470 18 C -0.021 4.021 19 N -0.322 5.322 20 C -0.035 4.035 21 C -0.226 4.226 22 S 0.025 5.975 23 C 0.214 3.786 24 O -0.419 6.419 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.126 0.874 36 H 0.036 0.964 37 H 0.006 0.994 38 H 0.075 0.925 39 H 0.177 0.823 40 H 0.137 0.863 41 H 0.157 0.843 42 H 0.100 0.900 43 H 0.179 0.821 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.370 6.495 -1.495 21.432 hybrid contribution 1.430 -1.212 -0.959 2.105 sum -18.940 5.283 -2.454 19.815 Atomic orbital electron populations 1.21910 0.93519 1.02704 1.02368 1.21045 0.97242 0.95934 0.96672 1.21830 1.00520 0.95877 1.02170 1.22050 1.00445 0.95022 0.99202 1.21887 1.00808 0.91587 0.87193 1.48236 1.17629 1.53425 1.13465 1.18682 0.79557 0.92504 0.94966 1.21644 0.94026 0.97437 1.44573 0.92049 1.25931 0.94682 1.03472 0.95328 1.70076 0.99346 1.38743 1.49043 0.85419 0.77324 0.78441 0.79341 1.18106 1.20848 1.19969 1.21678 0.88540 0.80394 0.82740 1.90657 1.75057 1.46167 1.35145 1.21633 0.90746 1.03743 0.85962 1.47631 1.49152 1.22803 1.12643 1.21795 0.96386 0.87119 0.98174 1.24481 1.07100 0.96128 0.94939 1.87313 1.60854 1.29569 1.19772 1.22149 0.83291 0.85541 0.87631 1.90816 1.43649 1.27312 1.80127 0.91358 0.92651 0.91461 0.90647 0.93763 0.91133 0.93029 0.92469 0.94095 0.90372 0.87355 0.96393 0.99415 0.92509 0.82291 0.86285 0.84293 0.89995 0.82052 0.85348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.95 71.98 0.64 -1.56 16 2 C -0.09 -1.80 2.92 -10.79 -0.03 -1.83 16 3 C -0.15 -2.84 9.19 71.98 0.66 -2.17 16 4 C -0.13 -3.51 5.01 30.59 0.15 -3.36 16 5 C 0.11 3.16 4.97 86.38 0.43 3.58 16 6 N -0.60 -24.96 2.46 -826.14 -2.03 -26.99 16 7 C 0.26 14.44 5.16 85.64 0.44 14.88 16 8 C -0.54 -30.42 9.39 25.60 0.24 -30.18 16 9 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 10 C 0.00 0.26 5.46 84.65 0.46 0.72 16 11 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 12 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 13 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 16 C 0.48 19.74 7.74 87.66 0.68 20.42 16 17 O -0.59 -30.91 16.01 -3.03 -0.05 -30.95 16 18 C 0.11 2.94 4.60 85.64 0.39 3.33 16 19 N -0.59 -15.94 2.27 -844.70 -1.91 -17.86 16 20 C 0.09 1.50 6.80 86.88 0.59 2.09 16 21 C -0.08 -1.06 7.42 72.12 0.54 -0.53 16 22 S -0.20 -5.12 23.25 -56.49 -1.31 -6.43 16 23 C 0.53 17.89 8.27 130.07 1.08 18.97 16 24 O -0.54 -22.55 17.28 -4.10 -0.07 -22.62 16 25 H 0.07 0.87 6.57 -2.39 -0.02 0.85 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.61 7.22 -2.39 -0.02 1.59 16 33 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 2.43 8.07 -2.39 -0.02 2.41 16 35 H 0.11 2.22 4.87 -2.39 -0.01 2.21 16 36 H 0.02 1.02 8.07 -2.39 -0.02 1.00 16 37 H -0.01 -0.80 7.42 -2.39 -0.02 -0.81 16 38 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.16 2.64 7.34 -2.39 -0.02 2.62 16 40 H 0.12 3.13 6.70 -2.38 -0.02 3.12 16 41 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.16 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -85.57 373.20 4.19 -81.38 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 0.98 Total: 9.84 kcal Atomic # 6 Polarization: 18.09 SS G_CDS: 6.27 Total: 24.37 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -3.66 Total: -101.57 kcal Atomic # 8 Polarization: -53.45 SS G_CDS: -0.12 Total: -53.57 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -5.12 SS G_CDS: -1.31 Total: -6.43 kcal Total: -85.57 4.19 -81.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728870944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.618 kcal (2) G-P(sol) polarization free energy of solvation -85.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds