Wall clock time and date at job start Tue Mar 31 2020 11:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47210 * 2 1 4 4 C 1.52997 * 109.47253 * 239.99805 * 2 1 3 5 5 C 1.53000 * 109.47042 * 119.99923 * 2 1 3 6 6 N 1.46496 * 109.47227 * 54.28029 * 5 2 1 7 7 C 1.46502 * 119.99766 * 275.81519 * 6 5 2 8 8 C 1.50705 * 109.46947 * 269.99331 * 7 6 5 9 9 H 1.07995 * 119.99899 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99963 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99904 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00094 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47108 * 60.00458 * 12 10 8 14 14 H 1.48503 * 109.47421 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47270 * 300.00153 * 12 10 8 16 16 C 1.34771 * 120.00315 * 95.81036 * 6 5 2 17 17 O 1.21277 * 120.00489 * 185.44549 * 16 6 5 18 18 C 1.50706 * 119.99804 * 5.44989 * 16 6 5 19 19 N 1.46505 * 109.47051 * 174.44485 * 18 16 6 20 20 C 1.44537 * 120.61115 * 270.00242 * 19 18 16 21 21 C 1.53433 * 111.71408 * 180.02562 * 20 19 18 22 22 S 1.82068 * 103.93472 * 359.78303 * 21 20 19 23 23 C 1.33002 * 120.61283 * 90.02412 * 19 18 16 24 24 O 1.21619 * 125.20314 * 359.94420 * 23 19 18 25 25 H 1.09004 * 109.47271 * 300.00435 * 1 2 3 26 26 H 1.09004 * 109.46947 * 59.99962 * 1 2 3 27 27 H 1.08994 * 109.47293 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47141 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47197 * 299.99885 * 3 2 1 30 30 H 1.09004 * 109.47359 * 59.99619 * 3 2 1 31 31 H 1.08998 * 109.46982 * 304.15744 * 4 2 1 32 32 H 1.09008 * 109.47082 * 64.15400 * 4 2 1 33 33 H 1.08998 * 109.47231 * 184.15203 * 4 2 1 34 34 H 1.08999 * 109.46957 * 294.28325 * 5 2 1 35 35 H 1.09001 * 109.47216 * 174.28171 * 5 2 1 36 36 H 1.08997 * 109.47725 * 29.99746 * 7 6 5 37 37 H 1.09007 * 109.47138 * 150.00040 * 7 6 5 38 38 H 0.97000 * 119.99779 * 179.97438 * 11 10 8 39 39 H 1.08995 * 109.46868 * 54.44456 * 18 16 6 40 40 H 1.08999 * 109.46697 * 294.44461 * 18 16 6 41 41 H 1.08999 * 109.04431 * 300.61244 * 20 19 18 42 42 H 1.08996 * 109.04351 * 59.43059 * 20 19 18 43 43 H 1.08999 * 110.53600 * 118.61048 * 21 20 19 44 44 H 1.08994 * 110.53449 * 241.24424 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.4425 -2.0569 1.3201 7 6 0.1136 -2.2345 1.9107 8 6 0.2514 -2.4933 3.3889 9 1 1.2307 -2.5222 3.8431 10 6 -0.8730 -2.6922 4.1617 11 7 -2.0658 -2.6566 3.6087 12 14 -0.7024 -3.0123 5.9941 13 1 -0.0247 -1.8580 6.6372 14 1 -2.0494 -3.1925 6.5927 15 1 0.1027 -4.2416 6.2090 16 6 2.1152 -3.1224 0.8419 17 8 1.5826 -4.2114 0.8099 18 6 3.5295 -2.9604 0.3472 19 7 4.0813 -4.2742 0.0070 20 6 4.7799 -5.0586 0.9999 21 6 5.2710 -6.3940 0.4258 22 16 4.7116 -6.3588 -1.3064 23 6 3.9491 -4.7670 -1.2212 24 8 3.3852 -4.2095 -2.1434 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6171 -1.7252 -1.2872 32 1 1.7387 -0.1663 -2.1377 33 1 3.1274 -0.7862 -1.2128 34 1 1.7626 -0.1517 2.1363 35 1 3.1251 -0.8108 1.1996 36 1 -0.4776 -1.3324 1.7533 37 1 -0.3837 -3.0818 1.4383 38 1 -2.8568 -2.7969 4.1523 39 1 4.1371 -2.5020 1.1274 40 1 3.5341 -2.3241 -0.5378 41 1 5.6367 -4.4912 1.3631 42 1 4.1074 -5.2562 1.8346 43 1 6.3579 -6.4564 0.4788 44 1 4.8148 -7.2294 0.9568 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729447482.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:36 Heat of formation + Delta-G solvation = -61.459075 kcal Electronic energy + Delta-G solvation = -25786.420464 eV Core-core repulsion = 22251.476676 eV Total energy + Delta-G solvation = -3534.943788 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.41509 -39.00910 -37.10583 -36.47734 -33.90659 -32.50613 -31.65250 -29.02277 -27.34595 -26.94714 -26.78255 -25.52134 -24.74079 -22.88624 -21.01363 -19.34926 -18.26284 -18.16620 -17.15166 -16.70214 -16.47692 -15.79961 -15.32335 -15.08473 -14.61743 -14.34780 -14.20124 -14.13238 -13.80169 -13.64901 -13.60604 -13.02121 -12.76923 -12.63569 -12.35539 -12.13780 -12.01421 -11.61942 -11.38480 -11.34544 -11.17114 -11.03635 -10.97626 -10.85290 -10.60928 -10.44206 -10.21544 -10.15497 -9.86107 -9.66862 -9.56081 -8.78106 -8.45274 -8.23721 -7.67512 -6.07754 -4.12872 1.09799 1.74197 2.28502 2.98834 3.25803 3.27000 3.32424 3.34676 3.89346 4.07434 4.39730 4.49766 4.90270 4.94336 5.01108 5.06080 5.16533 5.17690 5.24589 5.27882 5.32159 5.44810 5.57323 5.70924 5.75065 5.89274 5.94152 6.00372 6.12259 6.14182 6.28087 6.30992 6.43051 6.59333 6.77979 6.84401 7.05630 7.42532 7.49635 7.62110 7.88093 8.20266 8.34111 8.83572 8.99815 9.51704 11.00002 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.011233 B = 0.005235 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.984865 B = 5347.640256 C = 7106.046522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.137 4.137 4 C -0.143 4.143 5 C 0.118 3.882 6 N -0.589 5.589 7 C 0.239 3.761 8 C -0.529 4.529 9 H 0.055 0.945 10 C 0.062 3.938 11 N -0.892 5.892 12 Si 0.896 3.104 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.278 1.278 16 C 0.492 3.508 17 O -0.531 6.531 18 C 0.085 3.915 19 N -0.589 5.589 20 C 0.099 3.901 21 C -0.095 4.095 22 S -0.186 6.186 23 C 0.554 3.446 24 O -0.483 6.483 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.041 0.959 38 H 0.264 0.736 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.116 0.884 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.041 2.385 -5.228 17.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C -0.194 4.194 4 C -0.200 4.200 5 C -0.006 4.006 6 N -0.320 5.320 7 C 0.120 3.880 8 C -0.568 4.568 9 H 0.073 0.927 10 C -0.140 4.140 11 N -0.531 5.531 12 Si 0.724 3.276 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.203 1.203 16 C 0.277 3.723 17 O -0.408 6.408 18 C -0.044 4.044 19 N -0.325 5.325 20 C -0.026 4.026 21 C -0.244 4.244 22 S 0.039 5.961 23 C 0.232 3.768 24 O -0.360 6.360 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.134 0.866 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.345 1.258 -6.601 16.752 hybrid contribution -0.148 0.662 2.148 2.253 sum 15.198 1.920 -4.453 15.953 Atomic orbital electron populations 1.22039 0.93698 1.03262 1.00990 1.21018 0.97149 0.95150 0.95590 1.21805 1.00465 0.95285 1.01882 1.22012 0.99832 1.01092 0.97076 1.21595 0.96489 0.84702 0.97852 1.48146 1.20616 1.05124 1.58135 1.19528 0.77219 0.98664 0.92580 1.21389 0.92795 1.49530 0.93065 0.92708 1.24917 0.95132 0.95210 0.98732 1.69920 0.97628 1.49491 1.36067 0.86592 0.77223 0.78742 0.85023 1.20266 1.21161 1.20321 1.20511 0.87638 0.85271 0.78919 1.90691 1.69055 1.25765 1.55298 1.21937 0.94554 0.84108 1.03817 1.47385 1.55497 1.19842 1.09732 1.21392 0.98070 0.91128 0.91977 1.24154 1.05574 1.00670 0.93995 1.87295 1.69251 1.24070 1.15485 1.21530 0.82108 0.88919 0.84198 1.90853 1.44336 1.61621 1.39163 0.92196 0.93657 0.91036 0.92925 0.92690 0.92395 0.92140 0.92672 0.93096 0.89809 0.91802 0.93469 0.94057 0.92634 0.87574 0.86211 0.89251 0.88648 0.86564 0.86459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 6.98 37.16 0.26 -2.02 16 2 C -0.09 -1.21 0.85 -154.51 -0.13 -1.34 16 3 C -0.14 -1.49 8.47 37.16 0.31 -1.17 16 4 C -0.14 -1.98 6.84 37.16 0.25 -1.73 16 5 C 0.12 1.80 4.58 -4.04 -0.02 1.78 16 6 N -0.59 -11.75 2.00 -175.06 -0.35 -12.10 16 7 C 0.24 5.98 3.93 -5.19 -0.02 5.96 16 8 C -0.53 -14.38 9.39 -34.44 -0.32 -14.71 16 9 H 0.05 1.47 7.81 -52.49 -0.41 1.06 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 12 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 16 C 0.49 9.91 6.47 -10.99 -0.07 9.84 16 17 O -0.53 -13.27 15.96 5.56 0.09 -13.18 16 18 C 0.09 1.26 4.41 -5.19 -0.02 1.23 16 19 N -0.59 -8.59 2.28 -180.65 -0.41 -9.00 16 20 C 0.10 1.04 6.80 -4.87 -0.03 1.01 16 21 C -0.10 -0.84 7.42 37.38 0.28 -0.56 16 22 S -0.19 -2.49 23.25 -107.50 -2.50 -4.99 16 23 C 0.55 9.31 8.22 53.27 0.44 9.75 16 24 O -0.48 -9.67 17.28 5.26 0.09 -9.57 16 25 H 0.06 0.98 7.72 -51.93 -0.40 0.58 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 1.37 5.76 -51.93 -0.30 1.07 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.03 6.75 -51.93 -0.35 0.68 16 32 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.05 0.62 6.49 -51.93 -0.34 0.28 16 34 H 0.08 1.33 8.11 -51.93 -0.42 0.90 16 35 H 0.06 0.77 6.11 -51.93 -0.32 0.45 16 36 H 0.05 1.18 5.32 -51.93 -0.28 0.90 16 37 H 0.04 1.21 7.35 -51.93 -0.38 0.83 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 39 H 0.11 1.19 7.28 -51.93 -0.38 0.81 16 40 H 0.12 1.71 4.18 -51.93 -0.22 1.49 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 359.20 15.07 5.41 5.41 Total: -1.00 -34.80 359.20 -7.86 -42.66 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.73 Total: 0.15 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 0.83 Total: 9.68 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.03 Total: -46.37 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: 0.18 Total: -22.75 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -2.49 SS G_CDS: -2.50 Total: -4.99 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.80 -7.86 -42.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729447482.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.799 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds