Wall clock time and date at job start Tue Mar 31 2020 11:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47210 * 2 1 4 4 C 1.52997 * 109.47253 * 239.99805 * 2 1 3 5 5 C 1.53000 * 109.47042 * 119.99923 * 2 1 3 6 6 N 1.46496 * 109.47227 * 54.28029 * 5 2 1 7 7 C 1.46502 * 119.99766 * 275.81519 * 6 5 2 8 8 C 1.50705 * 109.46947 * 269.99331 * 7 6 5 9 9 H 1.07995 * 119.99899 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99963 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99904 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00094 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47108 * 60.00458 * 12 10 8 14 14 H 1.48503 * 109.47421 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47270 * 300.00153 * 12 10 8 16 16 C 1.34771 * 120.00315 * 95.81036 * 6 5 2 17 17 O 1.21277 * 120.00489 * 185.44549 * 16 6 5 18 18 C 1.50706 * 119.99804 * 5.44989 * 16 6 5 19 19 N 1.46505 * 109.47051 * 174.44485 * 18 16 6 20 20 C 1.44537 * 120.61115 * 270.00242 * 19 18 16 21 21 C 1.53433 * 111.71408 * 180.02562 * 20 19 18 22 22 S 1.82068 * 103.93472 * 359.78303 * 21 20 19 23 23 C 1.33002 * 120.61283 * 90.02412 * 19 18 16 24 24 O 1.21619 * 125.20314 * 359.94420 * 23 19 18 25 25 H 1.09004 * 109.47271 * 300.00435 * 1 2 3 26 26 H 1.09004 * 109.46947 * 59.99962 * 1 2 3 27 27 H 1.08994 * 109.47293 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47141 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47197 * 299.99885 * 3 2 1 30 30 H 1.09004 * 109.47359 * 59.99619 * 3 2 1 31 31 H 1.08998 * 109.46982 * 304.15744 * 4 2 1 32 32 H 1.09008 * 109.47082 * 64.15400 * 4 2 1 33 33 H 1.08998 * 109.47231 * 184.15203 * 4 2 1 34 34 H 1.08999 * 109.46957 * 294.28325 * 5 2 1 35 35 H 1.09001 * 109.47216 * 174.28171 * 5 2 1 36 36 H 1.08997 * 109.47725 * 29.99746 * 7 6 5 37 37 H 1.09007 * 109.47138 * 150.00040 * 7 6 5 38 38 H 0.97000 * 119.99779 * 179.97438 * 11 10 8 39 39 H 1.08995 * 109.46868 * 54.44456 * 18 16 6 40 40 H 1.08999 * 109.46697 * 294.44461 * 18 16 6 41 41 H 1.08999 * 109.04431 * 300.61244 * 20 19 18 42 42 H 1.08996 * 109.04351 * 59.43059 * 20 19 18 43 43 H 1.08999 * 110.53600 * 118.61048 * 21 20 19 44 44 H 1.08994 * 110.53449 * 241.24424 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.4425 -2.0569 1.3201 7 6 0.1136 -2.2345 1.9107 8 6 0.2514 -2.4933 3.3889 9 1 1.2307 -2.5222 3.8431 10 6 -0.8730 -2.6922 4.1617 11 7 -2.0658 -2.6566 3.6087 12 14 -0.7024 -3.0123 5.9941 13 1 -0.0247 -1.8580 6.6372 14 1 -2.0494 -3.1925 6.5927 15 1 0.1027 -4.2416 6.2090 16 6 2.1152 -3.1224 0.8419 17 8 1.5826 -4.2114 0.8099 18 6 3.5295 -2.9604 0.3472 19 7 4.0813 -4.2742 0.0070 20 6 4.7799 -5.0586 0.9999 21 6 5.2710 -6.3940 0.4258 22 16 4.7116 -6.3588 -1.3064 23 6 3.9491 -4.7670 -1.2212 24 8 3.3852 -4.2095 -2.1434 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6171 -1.7252 -1.2872 32 1 1.7387 -0.1663 -2.1377 33 1 3.1274 -0.7862 -1.2128 34 1 1.7626 -0.1517 2.1363 35 1 3.1251 -0.8108 1.1996 36 1 -0.4776 -1.3324 1.7533 37 1 -0.3837 -3.0818 1.4383 38 1 -2.8568 -2.7969 4.1523 39 1 4.1371 -2.5020 1.1274 40 1 3.5341 -2.3241 -0.5378 41 1 5.6367 -4.4912 1.3631 42 1 4.1074 -5.2562 1.8346 43 1 6.3579 -6.4564 0.4788 44 1 4.8148 -7.2294 0.9568 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729447482.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:36 Heat of formation + Delta-G solvation = -84.890570 kcal Electronic energy + Delta-G solvation = -25787.436530 eV Core-core repulsion = 22251.476676 eV Total energy + Delta-G solvation = -3535.959854 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.72958 -40.37593 -38.48584 -37.69342 -35.66120 -34.36794 -32.74632 -30.49870 -28.79456 -28.11474 -28.04450 -26.94060 -25.80188 -24.64644 -22.26920 -20.71788 -19.52918 -19.30048 -18.69262 -18.44687 -17.82462 -17.10789 -16.82552 -16.54741 -16.17975 -15.54204 -15.29173 -15.25823 -15.14439 -14.96634 -14.83635 -14.44795 -14.22863 -13.85445 -13.62340 -13.34729 -13.17148 -13.08325 -12.93384 -12.76066 -12.56671 -12.52678 -12.35550 -12.14499 -11.99150 -11.98100 -11.73607 -11.56142 -11.42055 -11.11047 -11.02391 -10.60135 -10.14882 -9.38979 -9.26815 -8.20083 -6.35202 0.00224 0.86803 1.05214 1.37100 1.40994 1.48334 1.73300 1.92397 2.32811 2.48731 3.09551 3.26977 3.56715 3.81664 3.87277 3.90291 3.95600 4.05734 4.17615 4.40632 4.48828 4.55498 4.58596 4.68369 4.71735 4.77104 4.84052 4.92168 4.93777 5.06205 5.09135 5.11771 5.19657 5.25941 5.36756 5.42376 5.52852 5.60268 5.75967 5.86949 6.09202 6.41538 6.70760 6.77830 7.27779 7.43700 8.86649 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.011233 B = 0.005235 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.984865 B = 5347.640256 C = 7106.046522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 C -0.129 4.129 4 C -0.137 4.137 5 C 0.111 3.889 6 N -0.590 5.590 7 C 0.259 3.741 8 C -0.540 4.540 9 H 0.060 0.940 10 C 0.006 3.994 11 N -0.931 5.931 12 Si 0.967 3.033 13 H -0.257 1.257 14 H -0.284 1.284 15 H -0.276 1.276 16 C 0.484 3.516 17 O -0.594 6.594 18 C 0.095 3.905 19 N -0.589 5.589 20 C 0.088 3.912 21 C -0.078 4.078 22 S -0.203 6.203 23 C 0.535 3.465 24 O -0.534 6.534 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.026 0.974 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.017 0.983 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.041 0.959 37 H -0.019 1.019 38 H 0.265 0.735 39 H 0.156 0.844 40 H 0.127 0.873 41 H 0.139 0.861 42 H 0.079 0.921 43 H 0.162 0.838 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.974 3.649 -3.580 20.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.084 4.084 3 C -0.186 4.186 4 C -0.194 4.194 5 C -0.012 4.012 6 N -0.320 5.320 7 C 0.138 3.862 8 C -0.579 4.579 9 H 0.078 0.922 10 C -0.193 4.193 11 N -0.571 5.571 12 Si 0.792 3.208 13 H -0.181 1.181 14 H -0.210 1.210 15 H -0.201 1.201 16 C 0.271 3.729 17 O -0.475 6.475 18 C -0.034 4.034 19 N -0.323 5.323 20 C -0.035 4.035 21 C -0.226 4.226 22 S 0.023 5.977 23 C 0.215 3.785 24 O -0.415 6.415 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.036 0.964 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.127 0.873 36 H 0.059 0.941 37 H 0.000 1.000 38 H 0.074 0.926 39 H 0.173 0.827 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.098 0.902 43 H 0.179 0.821 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 19.340 2.548 -4.931 20.121 hybrid contribution -1.403 0.213 1.617 2.152 sum 17.937 2.761 -3.314 18.448 Atomic orbital electron populations 1.21975 0.96124 1.00350 1.01267 1.21001 0.95076 0.97401 0.94882 1.21746 1.02114 0.92291 1.02485 1.21954 1.01167 0.98708 0.97549 1.21971 0.98780 0.82041 0.98396 1.48091 1.18937 1.07484 1.57449 1.18927 0.79801 0.95812 0.91694 1.21724 0.93026 1.49170 0.93957 0.92224 1.25881 0.94701 0.94840 1.03875 1.70075 0.98495 1.50569 1.37961 0.85472 0.77314 0.79091 0.78953 1.18132 1.20976 1.20120 1.21548 0.89613 0.84110 0.77648 1.90653 1.70889 1.28194 1.57770 1.21959 0.91148 0.85061 1.05228 1.47627 1.54810 1.20054 1.09807 1.21785 0.99014 0.92290 0.90448 1.24469 1.08219 1.00175 0.89771 1.87300 1.68878 1.21622 1.19885 1.22104 0.81988 0.89921 0.84480 1.90810 1.46358 1.63468 1.40822 0.93148 0.92068 0.95503 0.90209 0.91790 0.92203 0.96388 0.91590 0.90511 0.90222 0.87347 0.94146 1.00041 0.92619 0.82688 0.85500 0.84361 0.90226 0.82059 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 6.98 71.98 0.50 -4.14 16 2 C -0.08 -2.17 0.85 -52.18 -0.04 -2.22 16 3 C -0.13 -2.36 8.47 71.98 0.61 -1.75 16 4 C -0.14 -3.65 6.84 71.98 0.49 -3.16 16 5 C 0.11 3.19 4.58 86.38 0.40 3.58 16 6 N -0.59 -24.14 2.00 -826.15 -1.65 -25.79 16 7 C 0.26 13.80 3.93 85.63 0.34 14.14 16 8 C -0.54 -30.18 9.39 25.60 0.24 -29.94 16 9 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 10 C 0.01 0.32 5.46 84.65 0.46 0.79 16 11 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 12 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 13 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 16 C 0.48 19.90 6.47 87.66 0.57 20.47 16 17 O -0.59 -31.45 15.96 -3.02 -0.05 -31.50 16 18 C 0.10 2.62 4.41 85.63 0.38 3.00 16 19 N -0.59 -16.26 2.28 -844.68 -1.93 -18.19 16 20 C 0.09 1.56 6.80 86.89 0.59 2.15 16 21 C -0.08 -1.11 7.42 72.13 0.54 -0.57 16 22 S -0.20 -5.23 23.25 -56.49 -1.31 -6.54 16 23 C 0.54 18.03 8.22 130.07 1.07 19.10 16 24 O -0.53 -22.20 17.28 -4.09 -0.07 -22.27 16 25 H 0.05 1.72 7.72 -2.38 -0.02 1.70 16 26 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.03 1.11 5.76 -2.39 -0.01 1.09 16 28 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.02 0.62 6.75 -2.39 -0.02 0.60 16 32 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.08 1.63 6.49 -2.39 -0.02 1.62 16 34 H 0.08 2.39 8.11 -2.39 -0.02 2.37 16 35 H 0.11 2.16 6.11 -2.39 -0.01 2.14 16 36 H 0.04 2.18 5.32 -2.39 -0.01 2.17 16 37 H -0.02 -1.20 7.35 -2.38 -0.02 -1.22 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.16 2.72 7.28 -2.39 -0.02 2.70 16 40 H 0.13 3.37 4.18 -2.39 -0.01 3.36 16 41 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.16 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -85.32 359.20 4.43 -80.89 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 1.00 Total: 12.39 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: 6.13 Total: 21.45 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -3.30 Total: -100.20 kcal Atomic # 8 Polarization: -53.65 SS G_CDS: -0.12 Total: -53.77 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -5.23 SS G_CDS: -1.31 Total: -6.54 kcal Total: -85.32 4.43 -80.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729447482.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.002 kcal (2) G-P(sol) polarization free energy of solvation -85.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds