Wall clock time and date at job start Tue Mar 31 2020 10:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47176 * 2 1 4 4 C 1.35316 * 126.12455 * 85.00246 * 3 2 1 5 5 C 1.39871 * 107.91744 * 179.97438 * 4 3 2 6 6 C 1.50703 * 125.89728 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.46760 * 95.00270 * 6 5 4 8 8 C 1.34781 * 119.99927 * 179.97438 * 7 6 5 9 9 O 1.21579 * 119.99982 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99866 * 180.02562 * 8 7 6 11 11 C 1.39236 * 120.00109 * 175.71591 * 10 8 7 12 12 C 1.39483 * 119.83418 * 215.01943 * 11 10 8 13 13 C 1.36378 * 120.16559 * 179.75004 * 12 11 10 14 14 C 1.40861 * 119.83251 * 0.54708 * 13 12 11 15 15 C 1.41150 * 120.16746 * 179.69240 * 14 13 12 16 16 H 1.08001 * 120.00386 * 214.79932 * 15 14 13 17 17 C 1.39898 * 120.00025 * 34.79788 * 15 14 13 18 18 N 1.30883 * 120.00077 * 355.56240 * 17 15 14 19 19 Si 1.86802 * 120.00190 * 175.55825 * 17 15 14 20 20 H 1.48501 * 109.46810 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.46966 * 119.99973 * 19 17 15 22 22 H 1.48496 * 109.47223 * 240.00570 * 19 17 15 23 23 C 1.40870 * 119.67376 * 359.70805 * 14 13 12 24 24 C 1.36385 * 119.82538 * 0.02562 * 23 14 13 25 25 N 1.30835 * 108.20484 * 0.02562 * 5 4 3 26 26 N 1.34944 * 126.12601 * 264.69129 * 3 2 1 27 27 H 0.97001 * 126.04218 * 0.03878 * 26 3 2 28 28 H 1.09002 * 109.47107 * 60.00049 * 1 2 3 29 29 H 1.09001 * 109.47158 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46988 * 299.99519 * 1 2 3 31 31 H 1.09002 * 109.47375 * 120.00431 * 2 1 3 32 32 H 1.09002 * 109.46988 * 240.00480 * 2 1 3 33 33 H 1.07993 * 126.04194 * 359.94181 * 4 3 2 34 34 H 1.08995 * 109.47358 * 214.99987 * 6 5 4 35 35 H 1.08997 * 109.47223 * 335.00808 * 6 5 4 36 36 H 0.97006 * 120.00021 * 0.02562 * 7 6 5 37 37 H 0.97007 * 119.99959 * 355.70884 * 10 8 7 38 38 H 1.07999 * 119.91285 * 359.97438 * 12 11 10 39 39 H 1.08001 * 120.08408 * 180.25050 * 13 12 11 40 40 H 0.96991 * 119.99744 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.09105 * 179.97438 * 23 14 13 42 42 H 1.08001 * 119.91274 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2085 2.2047 1.0888 5 6 2.6878 3.4445 0.6535 6 6 3.0219 4.6212 1.5337 7 7 4.4540 4.6090 1.8425 8 6 4.9839 5.5738 2.6202 9 8 4.2734 6.4540 3.0659 10 7 6.3014 5.5629 2.9039 11 6 6.8655 6.6068 3.6324 12 6 8.1633 7.0306 3.3466 13 6 8.7205 8.0558 4.0524 14 6 7.9862 8.6795 5.0800 15 6 8.5584 9.7370 5.8194 16 1 8.3275 9.8493 6.8684 17 6 9.4247 10.6396 5.1934 18 7 9.7732 10.4540 3.9455 19 14 10.0841 12.1099 6.1383 20 1 9.5435 12.0923 7.5214 21 1 11.5668 12.0431 6.1861 22 1 9.6665 13.3627 5.4591 23 6 6.6780 8.2425 5.3664 24 6 6.1321 7.2196 4.6483 25 7 2.7951 3.4065 -0.6499 26 7 2.3926 2.1373 -1.0853 27 1 2.3736 1.8289 -2.0048 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 2.0130 1.9230 2.1129 34 1 2.7700 5.5461 1.0149 35 1 2.4501 4.5565 2.4594 36 1 5.0209 3.9069 1.4866 37 1 6.8567 4.8276 2.6006 38 1 8.7269 6.5479 2.5619 39 1 9.7240 8.3855 3.8273 40 1 10.3735 11.0800 3.5114 41 1 6.1091 8.7157 6.1531 42 1 5.1294 6.8832 4.8670 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732875240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:20 Heat of formation + Delta-G solvation = 60.795084 kcal Electronic energy + Delta-G solvation = -24085.085063 eV Core-core repulsion = 20452.291412 eV Total energy + Delta-G solvation = -3632.793650 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65497 -39.78584 -37.41251 -35.30097 -34.36664 -34.07302 -32.84101 -31.58259 -29.50102 -29.40796 -28.79913 -26.81990 -24.57874 -24.26850 -21.64312 -20.84629 -20.75178 -20.39028 -19.89608 -17.91563 -17.71583 -17.17576 -16.59877 -15.45165 -15.26829 -15.06885 -14.87924 -14.57402 -14.42663 -14.04238 -13.83374 -13.70156 -13.24499 -12.89155 -12.76937 -12.63184 -12.59172 -12.03701 -11.95748 -11.64505 -11.62570 -11.28197 -11.10267 -10.94078 -10.85282 -10.66203 -10.07146 -9.80877 -9.44090 -9.37937 -9.16167 -8.96726 -8.87561 -8.77577 -7.45157 -6.74681 -6.53531 -4.25556 1.46437 2.23313 2.47537 2.75009 3.14314 3.15721 3.20156 3.21587 3.34216 3.78289 4.04791 4.08779 4.31499 4.43754 4.71065 4.74912 4.78870 4.87027 5.09911 5.21191 5.33841 5.39633 5.54586 5.63459 5.66564 5.74182 5.87996 6.26365 6.27832 6.51023 6.61348 6.85323 6.91130 6.91224 7.13280 7.23834 7.34102 7.35625 7.49265 7.74036 7.95023 8.05773 8.18204 8.39590 8.54961 8.72631 9.01162 9.01718 9.17585 10.37828 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.047440 B = 0.001960 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.075456 B =14284.247963 C =14452.876964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.062 4.062 3 C 0.086 3.914 4 C -0.253 4.253 5 C 0.064 3.936 6 C 0.223 3.777 7 N -0.747 5.747 8 C 0.698 3.302 9 O -0.577 6.577 10 N -0.667 5.667 11 C 0.026 3.974 12 C -0.124 4.124 13 C -0.140 4.140 14 C 0.096 3.904 15 C -0.462 4.462 16 H 0.075 0.925 17 C 0.069 3.931 18 N -0.814 5.814 19 Si 0.914 3.086 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.275 1.275 23 C -0.203 4.203 24 C -0.087 4.087 25 N -0.273 5.273 26 N -0.472 5.472 27 H 0.437 0.563 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.150 0.850 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.394 0.606 37 H 0.392 0.608 38 H 0.090 0.910 39 H 0.132 0.868 40 H 0.276 0.724 41 H 0.095 0.905 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.578 -20.765 -9.251 25.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 C -0.042 4.042 4 C -0.283 4.283 5 C -0.102 4.102 6 C 0.097 3.903 7 N -0.404 5.404 8 C 0.398 3.602 9 O -0.454 6.454 10 N -0.313 5.313 11 C -0.067 4.067 12 C -0.145 4.145 13 C -0.160 4.160 14 C 0.094 3.906 15 C -0.493 4.493 16 H 0.094 0.906 17 C -0.146 4.146 18 N -0.442 5.442 19 Si 0.739 3.261 20 H -0.186 1.186 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.223 4.223 24 C -0.108 4.108 25 N -0.097 5.097 26 N -0.181 5.181 27 H 0.281 0.719 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.168 0.832 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.227 0.773 37 H 0.225 0.775 38 H 0.108 0.892 39 H 0.149 0.851 40 H 0.087 0.913 41 H 0.114 0.886 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.793 -19.160 -10.049 25.135 hybrid contribution 0.571 -0.598 -0.035 0.827 sum -12.222 -19.758 -10.084 25.327 Atomic orbital electron populations 1.21762 0.93759 1.02360 1.02758 1.20242 0.96688 0.89152 1.04071 1.21138 0.99684 0.95588 0.87805 1.21192 1.13625 0.93890 0.99545 1.22308 1.00013 0.96322 0.91600 1.19266 0.81326 0.93357 0.96349 1.45005 1.09092 1.30701 1.55642 1.15943 0.82758 0.81911 0.79558 1.90914 1.59827 1.37788 1.56853 1.42093 1.06941 1.24790 1.57436 1.17083 0.95041 0.96394 0.98169 1.20299 0.94407 0.99244 1.00521 1.21166 1.01003 0.94735 0.99093 1.17722 0.90056 0.90847 0.92011 1.19508 1.23192 1.09150 0.97430 0.90645 1.25864 0.94429 0.99386 0.94873 1.69779 1.28229 1.34994 1.11208 0.86167 0.78704 0.80705 0.80489 1.18629 1.20101 1.20067 1.20810 0.95843 1.01708 1.03939 1.20438 0.98746 0.97380 0.94186 1.77409 1.21399 0.98201 1.12702 1.46359 1.52804 1.10156 1.08765 0.71892 0.92669 0.91661 0.91731 0.88908 0.90652 0.83231 0.90154 0.89534 0.77319 0.77538 0.89186 0.85079 0.91325 0.88635 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.89 37.16 0.37 -0.20 16 2 C -0.06 -0.26 6.48 -27.88 -0.18 -0.44 16 3 C 0.09 0.64 6.46 -82.27 -0.53 0.11 16 4 C -0.25 -2.30 10.65 -40.01 -0.43 -2.73 16 5 C 0.06 0.72 6.59 -82.40 -0.54 0.18 16 6 C 0.22 2.82 6.23 -5.19 -0.03 2.79 16 7 N -0.75 -10.21 5.55 -66.42 -0.37 -10.58 16 8 C 0.70 12.86 8.39 -86.92 -0.73 12.14 16 9 O -0.58 -13.06 13.76 5.30 0.07 -12.99 16 10 N -0.67 -12.21 5.31 -14.10 -0.07 -12.28 16 11 C 0.03 0.59 6.31 -83.57 -0.53 0.06 16 12 C -0.12 -2.91 9.90 -39.79 -0.39 -3.30 16 13 C -0.14 -3.68 8.61 -39.26 -0.34 -4.02 16 14 C 0.10 2.64 5.55 -106.80 -0.59 2.05 16 15 C -0.46 -12.60 9.02 -37.86 -0.34 -12.94 16 16 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 17 C 0.07 1.78 5.42 -17.33 -0.09 1.69 16 18 N -0.81 -21.72 10.60 55.55 0.59 -21.13 16 19 Si 0.91 19.47 29.56 -169.99 -5.03 14.44 16 20 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 C -0.20 -5.27 9.74 -39.25 -0.38 -5.66 16 24 C -0.09 -2.16 8.61 -39.79 -0.34 -2.50 16 25 N -0.27 -3.20 12.70 33.67 0.43 -2.77 16 26 N -0.47 -3.85 7.36 33.48 0.25 -3.61 16 27 H 0.44 2.25 8.96 -182.60 -1.64 0.61 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.39 4.46 8.48 -40.82 -0.35 4.11 16 37 H 0.39 5.65 8.83 -40.82 -0.36 5.29 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.13 3.56 6.13 -52.49 -0.32 3.23 16 40 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 41 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 42 H 0.11 2.68 6.22 -52.49 -0.33 2.35 16 LS Contribution 359.96 15.07 5.42 5.42 Total: -1.00 -33.50 359.96 -10.56 -44.06 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -6.77 Total: 12.22 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -5.09 Total: -12.78 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.82 Total: -50.37 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.07 Total: -12.99 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.50 -10.56 -44.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732875240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.857 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds