Wall clock time and date at job start Tue Mar 31 2020 10:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47176 * 2 1 4 4 C 1.35316 * 126.12455 * 85.00246 * 3 2 1 5 5 C 1.39871 * 107.91744 * 179.97438 * 4 3 2 6 6 C 1.50703 * 125.89728 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.46760 * 95.00270 * 6 5 4 8 8 C 1.34781 * 119.99927 * 179.97438 * 7 6 5 9 9 O 1.21579 * 119.99982 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99866 * 180.02562 * 8 7 6 11 11 C 1.39236 * 120.00109 * 175.71591 * 10 8 7 12 12 C 1.39483 * 119.83418 * 215.01943 * 11 10 8 13 13 C 1.36378 * 120.16559 * 179.75004 * 12 11 10 14 14 C 1.40861 * 119.83251 * 0.54708 * 13 12 11 15 15 C 1.41150 * 120.16746 * 179.69240 * 14 13 12 16 16 H 1.08001 * 120.00386 * 214.79932 * 15 14 13 17 17 C 1.39898 * 120.00025 * 34.79788 * 15 14 13 18 18 N 1.30883 * 120.00077 * 355.56240 * 17 15 14 19 19 Si 1.86802 * 120.00190 * 175.55825 * 17 15 14 20 20 H 1.48501 * 109.46810 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.46966 * 119.99973 * 19 17 15 22 22 H 1.48496 * 109.47223 * 240.00570 * 19 17 15 23 23 C 1.40870 * 119.67376 * 359.70805 * 14 13 12 24 24 C 1.36385 * 119.82538 * 0.02562 * 23 14 13 25 25 N 1.30835 * 108.20484 * 0.02562 * 5 4 3 26 26 N 1.34944 * 126.12601 * 264.69129 * 3 2 1 27 27 H 0.97001 * 126.04218 * 0.03878 * 26 3 2 28 28 H 1.09002 * 109.47107 * 60.00049 * 1 2 3 29 29 H 1.09001 * 109.47158 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46988 * 299.99519 * 1 2 3 31 31 H 1.09002 * 109.47375 * 120.00431 * 2 1 3 32 32 H 1.09002 * 109.46988 * 240.00480 * 2 1 3 33 33 H 1.07993 * 126.04194 * 359.94181 * 4 3 2 34 34 H 1.08995 * 109.47358 * 214.99987 * 6 5 4 35 35 H 1.08997 * 109.47223 * 335.00808 * 6 5 4 36 36 H 0.97006 * 120.00021 * 0.02562 * 7 6 5 37 37 H 0.97007 * 119.99959 * 355.70884 * 10 8 7 38 38 H 1.07999 * 119.91285 * 359.97438 * 12 11 10 39 39 H 1.08001 * 120.08408 * 180.25050 * 13 12 11 40 40 H 0.96991 * 119.99744 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.09105 * 179.97438 * 23 14 13 42 42 H 1.08001 * 119.91274 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2085 2.2047 1.0888 5 6 2.6878 3.4445 0.6535 6 6 3.0219 4.6212 1.5337 7 7 4.4540 4.6090 1.8425 8 6 4.9839 5.5738 2.6202 9 8 4.2734 6.4540 3.0659 10 7 6.3014 5.5629 2.9039 11 6 6.8655 6.6068 3.6324 12 6 8.1633 7.0306 3.3466 13 6 8.7205 8.0558 4.0524 14 6 7.9862 8.6795 5.0800 15 6 8.5584 9.7370 5.8194 16 1 8.3275 9.8493 6.8684 17 6 9.4247 10.6396 5.1934 18 7 9.7732 10.4540 3.9455 19 14 10.0841 12.1099 6.1383 20 1 9.5435 12.0923 7.5214 21 1 11.5668 12.0431 6.1861 22 1 9.6665 13.3627 5.4591 23 6 6.6780 8.2425 5.3664 24 6 6.1321 7.2196 4.6483 25 7 2.7951 3.4065 -0.6499 26 7 2.3926 2.1373 -1.0853 27 1 2.3736 1.8289 -2.0048 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 2.0130 1.9230 2.1129 34 1 2.7700 5.5461 1.0149 35 1 2.4501 4.5565 2.4594 36 1 5.0209 3.9069 1.4866 37 1 6.8567 4.8276 2.6006 38 1 8.7269 6.5479 2.5619 39 1 9.7240 8.3855 3.8273 40 1 10.3735 11.0800 3.5114 41 1 6.1091 8.7157 6.1531 42 1 5.1294 6.8832 4.8670 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732875240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:20 Heat of formation + Delta-G solvation = 38.252830 kcal Electronic energy + Delta-G solvation = -24086.062568 eV Core-core repulsion = 20452.291412 eV Total energy + Delta-G solvation = -3633.771156 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.37586 -41.34084 -39.23521 -36.52499 -35.92368 -34.89685 -34.57941 -32.50555 -31.43564 -30.64545 -30.00039 -28.05786 -26.36644 -24.67914 -23.42510 -22.67198 -21.69651 -21.38189 -21.15002 -19.40846 -19.07886 -18.40076 -18.16548 -17.04551 -16.56698 -16.44154 -15.81970 -15.59542 -15.47397 -15.31804 -14.98492 -14.84587 -14.48244 -14.35195 -14.06206 -13.88496 -13.58561 -13.53972 -13.22934 -13.17289 -12.84339 -12.73743 -12.45785 -12.38607 -12.00357 -11.80502 -11.57838 -11.36620 -11.24458 -11.06002 -10.65719 -10.48243 -10.13013 -9.63594 -9.42310 -8.65758 -8.46792 -6.28982 0.72527 0.88252 1.18495 1.38917 1.41137 1.49850 1.56657 1.84735 2.08651 2.22610 2.27756 2.84678 3.40849 3.45537 3.68546 3.72419 4.03077 4.24280 4.41010 4.42409 4.51627 4.59599 4.65776 4.71797 4.77987 4.93114 4.96766 5.07557 5.16823 5.18293 5.28086 5.35498 5.38132 5.38716 5.47933 5.54733 5.72707 5.84043 6.06704 6.14519 6.26965 6.36547 6.43607 6.61802 6.72303 7.00649 7.04863 7.13339 7.64645 8.46198 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.047440 B = 0.001960 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.075456 B =14284.247963 C =14452.876964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.059 4.059 3 C 0.102 3.898 4 C -0.268 4.268 5 C 0.055 3.945 6 C 0.226 3.774 7 N -0.723 5.723 8 C 0.697 3.303 9 O -0.620 6.620 10 N -0.658 5.658 11 C 0.042 3.958 12 C -0.122 4.122 13 C -0.157 4.157 14 C 0.063 3.937 15 C -0.497 4.497 16 H 0.072 0.928 17 C 0.026 3.974 18 N -0.844 5.844 19 Si 0.989 3.011 20 H -0.260 1.260 21 H -0.263 1.263 22 H -0.270 1.270 23 C -0.217 4.217 24 C -0.098 4.098 25 N -0.311 5.311 26 N -0.462 5.462 27 H 0.450 0.550 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.162 0.838 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.409 0.591 37 H 0.414 0.586 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.284 0.716 41 H 0.096 0.904 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.817 -22.862 -10.272 28.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.098 4.098 3 C -0.028 4.028 4 C -0.298 4.298 5 C -0.111 4.111 6 C 0.100 3.900 7 N -0.380 5.380 8 C 0.398 3.602 9 O -0.500 6.500 10 N -0.306 5.306 11 C -0.052 4.052 12 C -0.142 4.142 13 C -0.177 4.177 14 C 0.061 3.939 15 C -0.528 4.528 16 H 0.091 0.909 17 C -0.185 4.185 18 N -0.472 5.472 19 Si 0.810 3.190 20 H -0.184 1.184 21 H -0.188 1.188 22 H -0.196 1.196 23 C -0.237 4.237 24 C -0.118 4.118 25 N -0.136 5.136 26 N -0.173 5.173 27 H 0.296 0.704 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.179 0.821 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.245 0.755 37 H 0.251 0.749 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.094 0.906 41 H 0.115 0.885 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.034 -21.340 -11.126 27.369 hybrid contribution 0.508 -0.146 0.149 0.549 sum -12.526 -21.486 -10.977 27.186 Atomic orbital electron populations 1.21755 0.93480 1.03216 1.02083 1.20387 0.96716 0.87006 1.05692 1.21640 0.97691 0.96625 0.86844 1.21399 1.14244 0.93342 1.00791 1.22068 1.01069 0.96450 0.91504 1.19235 0.80352 0.93619 0.96821 1.44779 1.09839 1.29545 1.53856 1.16061 0.82339 0.82152 0.79649 1.90892 1.60797 1.39764 1.58580 1.41858 1.07338 1.24449 1.56933 1.17099 0.94592 0.96334 0.97158 1.20529 0.94764 0.98344 1.00563 1.21148 1.00724 0.95980 0.99859 1.18046 0.90882 0.91769 0.93205 1.19734 1.25052 1.10445 0.97616 0.90948 1.26739 0.94128 1.01891 0.95761 1.69841 1.28685 1.36216 1.12491 0.85054 0.78428 0.76616 0.78910 1.18361 1.18757 1.19550 1.20933 0.95770 1.02486 1.04523 1.20552 0.98939 0.97526 0.94805 1.77323 1.22978 1.00227 1.13025 1.46383 1.51922 1.09168 1.09792 0.70367 0.93158 0.90068 0.92636 0.87670 0.88665 0.82066 0.91884 0.89054 0.75523 0.74927 0.85883 0.86336 0.90591 0.88538 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.89 71.98 0.71 -0.04 16 2 C -0.06 -0.29 6.48 29.85 0.19 -0.10 16 3 C 0.10 1.25 6.46 41.41 0.27 1.52 16 4 C -0.27 -4.39 10.65 21.99 0.23 -4.16 16 5 C 0.05 1.17 6.59 43.10 0.28 1.45 16 6 C 0.23 5.59 6.23 85.63 0.53 6.12 16 7 N -0.72 -18.84 5.55 -482.30 -2.68 -21.51 16 8 C 0.70 25.05 8.39 179.05 1.50 26.55 16 9 O -0.62 -28.14 13.76 -3.97 -0.05 -28.19 16 10 N -0.66 -23.02 5.31 -316.79 -1.68 -24.71 16 11 C 0.04 1.91 6.31 38.57 0.24 2.15 16 12 C -0.12 -5.62 9.90 22.14 0.22 -5.40 16 13 C -0.16 -8.41 8.61 22.48 0.19 -8.22 16 14 C 0.06 3.59 5.55 -21.28 -0.12 3.47 16 15 C -0.50 -28.03 9.02 23.39 0.21 -27.82 16 16 H 0.07 3.95 7.85 -2.91 -0.02 3.93 16 17 C 0.03 1.37 5.42 85.24 0.46 1.83 16 18 N -0.84 -45.73 10.60 21.82 0.23 -45.50 16 19 Si 0.99 40.20 29.56 68.60 2.03 42.23 16 20 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 22 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 23 C -0.22 -11.65 9.74 22.48 0.22 -11.43 16 24 C -0.10 -4.89 8.61 22.14 0.19 -4.70 16 25 N -0.31 -6.93 12.70 -47.38 -0.60 -7.53 16 26 N -0.46 -6.63 7.36 -48.00 -0.35 -6.99 16 27 H 0.45 3.65 8.96 -213.32 -1.91 1.74 16 28 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.41 8.39 8.48 -92.70 -0.79 7.60 16 37 H 0.41 10.84 8.83 -92.70 -0.82 10.02 16 38 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.12 6.60 6.13 -2.91 -0.02 6.58 16 40 H 0.28 13.93 8.30 -92.72 -0.77 13.16 16 41 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 42 H 0.11 5.46 6.22 -2.91 -0.02 5.44 16 Total: -1.00 -74.26 359.96 -0.19 -74.45 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: -2.43 Total: 36.51 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 5.35 Total: -18.75 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -5.08 Total: -106.24 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.05 Total: -28.19 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -74.26 -0.19 -74.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732875240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.703 kcal (2) G-P(sol) polarization free energy of solvation -74.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds