Wall clock time and date at job start Tue Mar 31 2020 10:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30853 * 125.41926 * 2 1 4 4 C 1.33313 * 109.68427 * 179.70702 * 3 2 1 5 5 C 1.36659 * 107.79010 * 0.43640 * 4 3 2 6 6 C 1.46760 * 126.84868 * 179.83951 * 5 4 3 7 7 O 1.21681 * 120.00188 * 169.16103 * 6 5 4 8 8 N 1.34776 * 120.00076 * 349.15903 * 6 5 4 9 9 C 1.46500 * 119.99948 * 1.85543 * 8 6 5 10 10 C 1.50702 * 109.46974 * 82.06934 * 9 8 6 11 11 H 1.07998 * 119.99820 * 354.78691 * 10 9 8 12 12 C 1.37872 * 120.00190 * 174.79634 * 10 9 8 13 13 N 1.31514 * 120.00065 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99819 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46724 * 90.00672 * 14 12 10 16 16 H 1.48496 * 109.47117 * 210.00158 * 14 12 10 17 17 H 1.48493 * 109.47365 * 330.00702 * 14 12 10 18 18 C 1.46501 * 120.00208 * 181.86153 * 8 6 5 19 19 C 1.50696 * 109.47283 * 89.99441 * 18 8 6 20 20 C 1.38227 * 119.61509 * 94.72821 * 19 18 8 21 21 C 1.38635 * 119.16270 * 179.75429 * 20 19 18 22 22 C 1.38674 * 118.41494 * 0.51177 * 21 20 19 23 23 C 1.38186 * 119.16604 * 359.72896 * 22 21 20 24 24 N 1.31852 * 119.62247 * 275.00264 * 19 18 8 25 25 N 1.34492 * 125.41570 * 179.97438 * 2 1 3 26 26 C 1.46495 * 126.47488 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.47074 * 270.02706 * 1 2 3 28 28 H 1.09000 * 109.47065 * 30.02320 * 1 2 3 29 29 H 1.09002 * 109.46954 * 150.02839 * 1 2 3 30 30 H 1.08009 * 126.10777 * 180.27686 * 4 3 2 31 31 H 1.08999 * 109.47264 * 202.06760 * 9 8 6 32 32 H 1.09000 * 109.46987 * 322.07074 * 9 8 6 33 33 H 0.96999 * 119.99801 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.46881 * 209.99821 * 18 8 6 35 35 H 1.09004 * 109.46799 * 329.99817 * 18 8 6 36 36 H 1.08003 * 120.42260 * 359.97438 * 20 19 18 37 37 H 1.07993 * 120.79237 * 180.26455 * 21 20 19 38 38 H 1.08003 * 120.41796 * 179.70958 * 22 21 20 39 39 H 1.08000 * 119.61589 * 180.02562 * 23 22 21 40 40 H 1.09002 * 109.47329 * 274.60550 * 26 25 2 41 41 H 1.09005 * 109.47343 * 34.60719 * 26 25 2 42 42 H 1.09009 * 109.46999 * 154.60480 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 0.0064 5 6 3.5976 -0.6609 0.0008 6 6 4.8029 -1.4983 0.0013 7 8 4.7113 -2.6962 0.1941 8 7 6.0112 -0.9405 -0.2117 9 6 6.1260 0.5074 -0.4033 10 6 6.1371 1.1924 0.9389 11 1 5.9814 0.6176 1.8399 12 6 6.3459 2.5530 1.0168 13 7 6.3561 3.1508 2.1883 14 14 6.6157 3.5473 -0.5415 15 1 5.3077 4.0282 -1.0543 16 1 7.4879 4.7110 -0.2413 17 1 7.2658 2.6930 -1.5674 18 6 7.2097 -1.7820 -0.2517 19 6 7.4531 -2.2426 -1.6657 20 6 8.3178 -1.5315 -2.4765 21 6 8.5388 -1.9665 -3.7741 22 6 7.8706 -3.0995 -4.2131 23 6 7.0170 -3.7559 -3.3470 24 7 6.8347 -3.3161 -2.1171 25 7 2.2865 -1.0961 0.0005 26 6 1.8311 -2.4885 0.0016 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8903 -0.5134 30 1 4.3979 1.3722 0.0122 31 1 7.0518 0.7315 -0.9333 32 1 5.2776 0.8651 -0.9868 33 1 6.5034 4.1079 2.2430 34 1 8.0684 -1.2079 0.0964 35 1 7.0666 -2.6490 0.3933 36 1 8.8177 -0.6501 -2.1027 37 1 9.2123 -1.4334 -4.4288 38 1 8.0151 -3.4642 -5.2194 39 1 6.4932 -4.6393 -3.6811 40 1 1.6401 -2.8075 1.0263 41 1 0.9140 -2.5713 -0.5816 42 1 2.6005 -3.1227 -0.4390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826711403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:28 Heat of formation + Delta-G solvation = 92.218439 kcal Electronic energy + Delta-G solvation = -26591.912397 eV Core-core repulsion = 22960.481366 eV Total energy + Delta-G solvation = -3631.431031 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.67614 -40.11391 -38.56374 -35.56039 -33.47815 -33.02250 -32.30655 -31.85592 -31.11030 -28.61404 -27.65733 -26.44417 -25.59175 -23.42924 -22.78432 -22.19708 -21.25012 -19.72257 -18.63633 -17.18852 -16.73332 -16.42635 -16.09645 -15.82225 -15.62019 -15.43551 -15.26602 -14.42340 -13.97858 -13.72444 -13.43408 -13.28477 -13.10890 -13.07625 -12.93399 -12.79737 -12.59319 -12.40879 -12.11572 -12.03410 -11.65990 -11.61710 -11.08928 -10.91845 -10.49082 -10.22788 -9.80001 -9.71894 -9.60406 -9.25200 -9.17114 -9.07786 -8.87021 -8.76768 -7.91660 -7.71981 -6.26964 -4.29212 1.17048 1.39999 1.99745 2.99528 3.18600 3.23118 3.28403 3.46741 3.72576 4.08244 4.19013 4.22115 4.50261 4.80186 4.86252 4.91028 5.03266 5.04302 5.13476 5.15890 5.24103 5.35916 5.42757 5.64275 5.66176 5.72603 5.78022 5.87833 5.89980 6.01432 6.13097 6.23287 6.27267 6.33638 6.42880 6.58129 6.73718 6.79849 7.22824 7.30989 7.42910 7.67908 8.03564 8.20292 8.32139 8.59096 8.80226 8.91556 9.28103 10.84653 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.009191 B = 0.006709 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.891716 B = 4172.418171 C = 6316.239869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.205 3.795 3 N -0.503 5.503 4 C 0.046 3.954 5 C -0.094 4.094 6 C 0.601 3.399 7 O -0.558 6.558 8 N -0.575 5.575 9 C 0.188 3.812 10 C -0.545 4.545 11 H 0.084 0.916 12 C 0.083 3.917 13 N -0.877 5.877 14 Si 0.858 3.142 15 H -0.265 1.265 16 H -0.280 1.280 17 H -0.261 1.261 18 C 0.171 3.829 19 C 0.118 3.882 20 C -0.158 4.158 21 C -0.080 4.080 22 C -0.180 4.180 23 C 0.093 3.907 24 N -0.458 5.458 25 N -0.433 5.433 26 C 0.074 3.926 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.231 0.769 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.269 0.731 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.150 0.850 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 -9.462 -10.867 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.056 4.056 3 N -0.223 5.223 4 C -0.106 4.106 5 C -0.208 4.208 6 C 0.391 3.609 7 O -0.439 6.439 8 N -0.305 5.305 9 C 0.067 3.933 10 C -0.582 4.582 11 H 0.102 0.898 12 C -0.123 4.123 13 N -0.512 5.512 14 Si 0.684 3.316 15 H -0.190 1.190 16 H -0.205 1.205 17 H -0.186 1.186 18 C 0.047 3.953 19 C -0.021 4.021 20 C -0.178 4.178 21 C -0.106 4.106 22 C -0.201 4.201 23 C -0.065 4.065 24 N -0.167 5.167 25 N -0.117 5.117 26 C -0.069 4.069 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.247 0.753 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.168 0.832 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.201 -9.721 -10.091 14.372 hybrid contribution 1.075 0.329 -1.283 1.706 sum -2.126 -9.392 -11.374 14.902 Atomic orbital electron populations 1.20154 0.85295 1.03507 1.03280 1.23369 0.95554 0.81909 1.04814 1.70250 1.03166 1.27764 1.21122 1.25095 0.95397 0.93111 0.96983 1.20675 0.84487 0.95312 1.20357 1.16651 0.82222 0.85760 0.76281 1.90707 1.86563 1.14940 1.51700 1.47397 1.04481 1.08861 1.69747 1.20502 0.98417 0.76147 0.98270 1.21309 1.51033 0.93395 0.92511 0.89839 1.24870 0.94018 0.97424 0.96010 1.69868 1.47064 1.10774 1.23530 0.87115 0.79690 0.80835 0.83983 1.18952 1.20523 1.18598 1.20179 0.88743 0.96034 0.90359 1.21904 0.91810 0.90642 0.97732 1.22119 1.00020 1.00991 0.94720 1.21551 0.97854 0.95574 0.95656 1.22106 0.99382 0.97438 1.01134 1.22773 0.95479 0.98849 0.89364 1.67635 1.21004 1.12930 1.15138 1.44928 1.05484 1.07495 1.53777 1.22085 1.01509 0.79996 1.03296 0.90289 0.89286 0.91267 0.75332 0.94324 0.93935 0.92043 0.88222 0.88524 0.84483 0.85060 0.85254 0.83233 0.90829 0.90537 0.88105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.18 36.01 0.37 -0.41 16 2 C 0.20 3.74 7.88 -155.62 -1.23 2.52 16 3 N -0.50 -11.11 11.20 -10.58 -0.12 -11.23 16 4 C 0.05 1.07 9.18 -17.48 -0.16 0.91 16 5 C -0.09 -2.09 6.75 -82.14 -0.55 -2.65 16 6 C 0.60 13.42 7.55 -12.82 -0.10 13.33 16 7 O -0.56 -12.77 14.52 5.21 0.08 -12.69 16 8 N -0.58 -12.12 2.47 -177.95 -0.44 -12.56 16 9 C 0.19 4.13 3.82 -5.19 -0.02 4.11 16 10 C -0.54 -13.96 7.42 -34.44 -0.26 -14.21 16 11 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 12 C 0.08 2.17 5.19 -17.82 -0.09 2.08 16 13 N -0.88 -24.93 13.96 55.43 0.77 -24.15 16 14 Si 0.86 19.24 27.26 -169.99 -4.63 14.61 16 15 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 17 H -0.26 -5.43 6.39 56.52 0.36 -5.07 16 18 C 0.17 3.10 5.69 -5.20 -0.03 3.07 16 19 C 0.12 1.98 6.36 -82.59 -0.53 1.46 16 20 C -0.16 -2.24 9.72 -39.44 -0.38 -2.63 16 21 C -0.08 -0.96 10.18 -39.27 -0.40 -1.36 16 22 C -0.18 -2.07 10.11 -39.44 -0.40 -2.47 16 23 C 0.09 1.26 11.18 -17.55 -0.20 1.07 16 24 N -0.46 -7.86 10.27 -9.48 -0.10 -7.96 16 25 N -0.43 -8.15 3.17 -117.27 -0.37 -8.52 16 26 C 0.07 1.06 10.45 59.84 0.63 1.69 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.65 7.13 -51.93 -0.37 0.28 16 30 H 0.23 5.69 2.69 -52.48 -0.14 5.55 16 31 H 0.04 0.81 6.70 -51.93 -0.35 0.46 16 32 H 0.04 0.97 4.60 -51.93 -0.24 0.73 16 33 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.10 1.63 7.97 -51.93 -0.41 1.21 16 35 H 0.10 1.82 7.39 -51.93 -0.38 1.44 16 36 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 39 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 0.81 7.17 -51.93 -0.37 0.44 16 42 H 0.10 1.62 6.50 -51.92 -0.34 1.28 16 LS Contribution 348.32 15.07 5.25 5.25 Total: -1.00 -33.41 348.32 -8.07 -41.48 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.16 Total: 9.28 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -3.35 Total: 6.51 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: -0.25 Total: -64.43 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.63 Total: 14.61 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.41 -8.07 -41.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826711403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.698 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds