Wall clock time and date at job start Tue Mar 31 2020 10:23:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 N 1.30853 * 125.41926 * 2 1
4 4 C 1.33313 * 109.68427 * 179.70702 * 3 2 1
5 5 C 1.36659 * 107.79010 * 0.43640 * 4 3 2
6 6 C 1.46760 * 126.84868 * 179.83951 * 5 4 3
7 7 O 1.21681 * 120.00188 * 169.16103 * 6 5 4
8 8 N 1.34776 * 120.00076 * 349.15903 * 6 5 4
9 9 C 1.46500 * 119.99948 * 1.85543 * 8 6 5
10 10 C 1.50702 * 109.46974 * 82.06934 * 9 8 6
11 11 H 1.07998 * 119.99820 * 354.78691 * 10 9 8
12 12 C 1.37872 * 120.00190 * 174.79634 * 10 9 8
13 13 N 1.31514 * 120.00065 * 180.02562 * 12 10 9
14 14 Si 1.86803 * 119.99819 * 359.97438 * 12 10 9
15 15 H 1.48503 * 109.46724 * 90.00672 * 14 12 10
16 16 H 1.48496 * 109.47117 * 210.00158 * 14 12 10
17 17 H 1.48493 * 109.47365 * 330.00702 * 14 12 10
18 18 C 1.46501 * 120.00208 * 181.86153 * 8 6 5
19 19 C 1.50696 * 109.47283 * 89.99441 * 18 8 6
20 20 C 1.38227 * 119.61509 * 94.72821 * 19 18 8
21 21 C 1.38635 * 119.16270 * 179.75429 * 20 19 18
22 22 C 1.38674 * 118.41494 * 0.51177 * 21 20 19
23 23 C 1.38186 * 119.16604 * 359.72896 * 22 21 20
24 24 N 1.31852 * 119.62247 * 275.00264 * 19 18 8
25 25 N 1.34492 * 125.41570 * 179.97438 * 2 1 3
26 26 C 1.46495 * 126.47488 * 359.97438 * 25 2 1
27 27 H 1.09000 * 109.47074 * 270.02706 * 1 2 3
28 28 H 1.09000 * 109.47065 * 30.02320 * 1 2 3
29 29 H 1.09002 * 109.46954 * 150.02839 * 1 2 3
30 30 H 1.08009 * 126.10777 * 180.27686 * 4 3 2
31 31 H 1.08999 * 109.47264 * 202.06760 * 9 8 6
32 32 H 1.09000 * 109.46987 * 322.07074 * 9 8 6
33 33 H 0.96999 * 119.99801 * 179.97438 * 13 12 10
34 34 H 1.08997 * 109.46881 * 209.99821 * 18 8 6
35 35 H 1.09004 * 109.46799 * 329.99817 * 18 8 6
36 36 H 1.08003 * 120.42260 * 359.97438 * 20 19 18
37 37 H 1.07993 * 120.79237 * 180.26455 * 21 20 19
38 38 H 1.08003 * 120.41796 * 179.70958 * 22 21 20
39 39 H 1.08000 * 119.61589 * 180.02562 * 23 22 21
40 40 H 1.09002 * 109.47329 * 274.60550 * 26 25 2
41 41 H 1.09005 * 109.47343 * 34.60719 * 26 25 2
42 42 H 1.09009 * 109.46999 * 154.60480 * 26 25 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2654 1.0664 0.0000
4 6 3.5486 0.7048 0.0064
5 6 3.5976 -0.6609 0.0008
6 6 4.8029 -1.4983 0.0013
7 8 4.7113 -2.6962 0.1941
8 7 6.0112 -0.9405 -0.2117
9 6 6.1260 0.5074 -0.4033
10 6 6.1371 1.1924 0.9389
11 1 5.9814 0.6176 1.8399
12 6 6.3459 2.5530 1.0168
13 7 6.3561 3.1508 2.1883
14 14 6.6157 3.5473 -0.5415
15 1 5.3077 4.0282 -1.0543
16 1 7.4879 4.7110 -0.2413
17 1 7.2658 2.6930 -1.5674
18 6 7.2097 -1.7820 -0.2517
19 6 7.4531 -2.2426 -1.6657
20 6 8.3178 -1.5315 -2.4765
21 6 8.5388 -1.9665 -3.7741
22 6 7.8706 -3.0995 -4.2131
23 6 7.0170 -3.7559 -3.3470
24 7 6.8347 -3.3161 -2.1171
25 7 2.2865 -1.0961 0.0005
26 6 1.8311 -2.4885 0.0016
27 1 -0.3633 0.0005 1.0277
28 1 -0.3633 0.8898 -0.5142
29 1 -0.3633 -0.8903 -0.5134
30 1 4.3979 1.3722 0.0122
31 1 7.0518 0.7315 -0.9333
32 1 5.2776 0.8651 -0.9868
33 1 6.5034 4.1079 2.2430
34 1 8.0684 -1.2079 0.0964
35 1 7.0666 -2.6490 0.3933
36 1 8.8177 -0.6501 -2.1027
37 1 9.2123 -1.4334 -4.4288
38 1 8.0151 -3.4642 -5.2194
39 1 6.4932 -4.6393 -3.6811
40 1 1.6401 -2.8075 1.0263
41 1 0.9140 -2.5713 -0.5816
42 1 2.6005 -3.1227 -0.4390
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000826711403.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:23:27
Heat of formation + Delta-G solvation = 70.024044 kcal
Electronic energy + Delta-G solvation = -26592.874819 eV
Core-core repulsion = 22960.481366 eV
Total energy + Delta-G solvation = -3632.393453 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.148 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-43.22593 -41.27502 -40.12511 -37.27028 -34.94754 -34.78532 -33.53670 -33.18230
-32.32279 -30.29393 -29.09218 -27.80564 -26.93965 -24.81482 -24.31420 -23.52428
-22.75096 -21.15360 -20.20936 -19.15454 -18.06658 -17.83687 -17.50812 -17.11729
-17.04548 -16.78778 -16.51445 -16.17505 -15.48575 -15.28732 -14.82872 -14.71325
-14.46256 -14.26797 -14.18680 -14.13052 -13.91410 -13.71098 -13.26126 -13.23410
-13.11317 -12.87669 -12.72515 -12.61643 -12.16703 -11.98370 -11.71726 -11.26853
-10.87787 -10.80709 -10.72530 -10.59723 -10.36478 -9.97806 -9.58885 -9.32544
-8.31860 -6.38641 0.11669 0.39412 0.42040 1.38724 1.43516 1.48651
1.58222 1.88387 2.32122 2.34283 2.38535 2.99012 3.02671 3.37519
3.54003 3.60915 3.84435 3.92963 4.03314 4.12818 4.20558 4.26268
4.30248 4.45581 4.52937 4.59201 4.61766 4.69096 4.74241 4.75909
4.77334 4.82415 4.86724 5.05610 5.19299 5.24831 5.27676 5.35324
5.56979 5.72116 5.81579 6.14814 6.25630 6.45140 6.66253 6.99253
7.13812 7.17628 7.26821 8.83866
Molecular weight = 314.15amu
Principal moments of inertia in cm(-1)
A = 0.009191 B = 0.006709 C = 0.004432
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3045.891716 B = 4172.418171 C = 6316.239869
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 C 0.220 3.780
3 N -0.542 5.542
4 C 0.023 3.977
5 C -0.118 4.118
6 C 0.593 3.407
7 O -0.573 6.573
8 N -0.577 5.577
9 C 0.201 3.799
10 C -0.534 4.534
11 H 0.031 0.969
12 C 0.031 3.969
13 N -0.930 5.930
14 Si 0.922 3.078
15 H -0.268 1.268
16 H -0.277 1.277
17 H -0.228 1.228
18 C 0.169 3.831
19 C 0.092 3.908
20 C -0.165 4.165
21 C -0.076 4.076
22 C -0.164 4.164
23 C 0.077 3.923
24 N -0.499 5.499
25 N -0.435 5.435
26 C 0.070 3.930
27 H 0.097 0.903
28 H 0.099 0.901
29 H 0.106 0.894
30 H 0.211 0.789
31 H 0.059 0.941
32 H 0.043 0.957
33 H 0.271 0.729
34 H 0.110 0.890
35 H 0.077 0.923
36 H 0.147 0.853
37 H 0.168 0.832
38 H 0.170 0.830
39 H 0.171 0.829
40 H 0.084 0.916
41 H 0.124 0.876
42 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.902 -10.143 -14.402 17.852
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C -0.042 4.042
3 N -0.263 5.263
4 C -0.129 4.129
5 C -0.233 4.233
6 C 0.383 3.617
7 O -0.455 6.455
8 N -0.306 5.306
9 C 0.080 3.920
10 C -0.573 4.573
11 H 0.050 0.950
12 C -0.170 4.170
13 N -0.568 5.568
14 Si 0.744 3.256
15 H -0.193 1.193
16 H -0.202 1.202
17 H -0.151 1.151
18 C 0.046 3.954
19 C -0.046 4.046
20 C -0.185 4.185
21 C -0.102 4.102
22 C -0.184 4.184
23 C -0.080 4.080
24 N -0.209 5.209
25 N -0.118 5.118
26 C -0.070 4.070
27 H 0.115 0.885
28 H 0.117 0.883
29 H 0.125 0.875
30 H 0.227 0.773
31 H 0.077 0.923
32 H 0.061 0.939
33 H 0.080 0.920
34 H 0.128 0.872
35 H 0.096 0.904
36 H 0.165 0.835
37 H 0.186 0.814
38 H 0.188 0.812
39 H 0.188 0.812
40 H 0.103 0.897
41 H 0.142 0.858
42 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges -3.809 -10.448 -13.636 17.596
hybrid contribution 1.178 0.408 -0.157 1.257
sum -2.631 -10.040 -13.793 17.262
Atomic orbital electron populations
1.20476 0.80585 1.05878 1.05119 1.24504 0.97755 0.80724 1.01213
1.70192 1.02920 1.29879 1.23264 1.24775 0.95920 0.93546 0.98621
1.20708 0.86023 0.95053 1.21486 1.16852 0.82791 0.85771 0.76274
1.90676 1.86875 1.15357 1.52618 1.47458 1.05153 1.08697 1.69288
1.20259 0.99096 0.76530 0.96122 1.21265 1.50220 0.93369 0.92400
0.95026 1.25679 0.93561 0.98434 0.99290 1.70020 1.49248 1.11193
1.26298 0.86102 0.79625 0.79484 0.80430 1.19255 1.20215 1.15069
1.20256 0.87857 0.95071 0.92189 1.21562 0.94005 0.91987 0.97046
1.22268 0.99509 1.01109 0.95655 1.22004 0.97733 0.95584 0.94903
1.22536 0.97198 0.96346 1.02298 1.23249 0.96307 0.99806 0.88655
1.67506 1.22344 1.13757 1.17321 1.45219 1.04262 1.09310 1.52973
1.22350 1.02653 0.77280 1.04749 0.88503 0.88275 0.87535 0.77349
0.92280 0.93941 0.91994 0.87183 0.90415 0.83532 0.81414 0.81248
0.81185 0.89749 0.85772 0.90124
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -1.30 10.18 71.24 0.73 -0.57 16
2 C 0.22 7.77 7.88 138.20 1.09 8.85 16
3 N -0.54 -24.20 11.20 -187.39 -2.10 -26.30 16
4 C 0.02 1.14 9.18 84.10 0.77 1.91 16
5 C -0.12 -5.38 6.75 40.01 0.27 -5.11 16
6 C 0.59 27.63 7.55 86.47 0.65 28.28 16
7 O -0.57 -27.34 14.52 -4.29 -0.06 -27.40 16
8 N -0.58 -25.29 2.47 -835.14 -2.06 -27.34 16
9 C 0.20 9.07 3.82 85.63 0.33 9.40 16
10 C -0.53 -28.78 7.42 25.60 0.19 -28.59 16
11 H 0.03 1.99 8.06 -2.91 -0.02 1.96 16
12 C 0.03 1.70 5.19 84.65 0.44 2.14 16
13 N -0.93 -55.32 13.96 21.45 0.30 -55.02 16
14 Si 0.92 39.86 27.26 68.60 1.87 41.73 16
15 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16
16 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16
17 H -0.23 -8.56 6.39 99.48 0.64 -7.92 16
18 C 0.17 6.41 5.69 85.63 0.49 6.90 16
19 C 0.09 3.08 6.36 42.55 0.27 3.35 16
20 C -0.17 -4.39 9.72 22.36 0.22 -4.17 16
21 C -0.08 -1.54 10.18 22.47 0.23 -1.31 16
22 C -0.16 -3.14 10.11 22.36 0.23 -2.91 16
23 C 0.08 1.96 11.18 84.67 0.95 2.90 16
24 N -0.50 -17.11 10.27 -183.89 -1.89 -19.00 16
25 N -0.44 -16.10 3.17 -524.93 -1.67 -17.77 16
26 C 0.07 1.90 10.45 127.77 1.34 3.24 16
27 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16
28 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16
29 H 0.11 1.45 7.13 -2.39 -0.02 1.43 16
30 H 0.21 10.85 2.69 -2.91 -0.01 10.85 16
31 H 0.06 2.41 6.70 -2.39 -0.02 2.39 16
32 H 0.04 1.98 4.60 -2.39 -0.01 1.97 16
33 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16
34 H 0.11 3.76 7.97 -2.39 -0.02 3.74 16
35 H 0.08 3.16 7.39 -2.39 -0.02 3.14 16
36 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16
37 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16
38 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16
39 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16
40 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16
41 H 0.12 2.13 7.17 -2.38 -0.02 2.11 16
42 H 0.08 2.56 6.50 -2.38 -0.02 2.54 16
Total: -1.00 -79.41 348.32 3.56 -75.86
By element:
Atomic # 1 Polarization: 29.93 SS G_CDS: 0.98 Total: 30.92 kcal
Atomic # 6 Polarization: 16.14 SS G_CDS: 8.18 Total: 24.32 kcal
Atomic # 7 Polarization: -138.01 SS G_CDS: -7.41 Total: -145.42 kcal
Atomic # 8 Polarization: -27.34 SS G_CDS: -0.06 Total: -27.40 kcal
Atomic # 14 Polarization: 39.86 SS G_CDS: 1.87 Total: 41.73 kcal
Total: -79.41 3.56 -75.86 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000826711403.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 145.880 kcal
(2) G-P(sol) polarization free energy of solvation -79.412 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.468 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.856 kcal
(6) G-S(sol) free energy of system = (1) + (5) 70.024 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds