Wall clock time and date at job start Tue Mar 31 2020 10:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30853 * 125.41926 * 2 1 4 4 C 1.33313 * 109.68427 * 179.70702 * 3 2 1 5 5 C 1.36659 * 107.79010 * 0.43640 * 4 3 2 6 6 C 1.46760 * 126.84868 * 179.83951 * 5 4 3 7 7 O 1.21681 * 120.00188 * 169.16103 * 6 5 4 8 8 N 1.34776 * 120.00076 * 349.15903 * 6 5 4 9 9 C 1.46500 * 119.99948 * 1.85543 * 8 6 5 10 10 C 1.50702 * 109.46974 * 82.06934 * 9 8 6 11 11 H 1.07998 * 119.99820 * 354.78691 * 10 9 8 12 12 C 1.37872 * 120.00190 * 174.79634 * 10 9 8 13 13 N 1.31514 * 120.00065 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99819 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46724 * 90.00672 * 14 12 10 16 16 H 1.48496 * 109.47117 * 210.00158 * 14 12 10 17 17 H 1.48493 * 109.47365 * 330.00702 * 14 12 10 18 18 C 1.46501 * 120.00208 * 181.86153 * 8 6 5 19 19 C 1.50696 * 109.47283 * 89.99441 * 18 8 6 20 20 C 1.38227 * 119.61509 * 94.72821 * 19 18 8 21 21 C 1.38635 * 119.16270 * 179.75429 * 20 19 18 22 22 C 1.38674 * 118.41494 * 0.51177 * 21 20 19 23 23 C 1.38186 * 119.16604 * 359.72896 * 22 21 20 24 24 N 1.31852 * 119.62247 * 275.00264 * 19 18 8 25 25 N 1.34492 * 125.41570 * 179.97438 * 2 1 3 26 26 C 1.46495 * 126.47488 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.47074 * 270.02706 * 1 2 3 28 28 H 1.09000 * 109.47065 * 30.02320 * 1 2 3 29 29 H 1.09002 * 109.46954 * 150.02839 * 1 2 3 30 30 H 1.08009 * 126.10777 * 180.27686 * 4 3 2 31 31 H 1.08999 * 109.47264 * 202.06760 * 9 8 6 32 32 H 1.09000 * 109.46987 * 322.07074 * 9 8 6 33 33 H 0.96999 * 119.99801 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.46881 * 209.99821 * 18 8 6 35 35 H 1.09004 * 109.46799 * 329.99817 * 18 8 6 36 36 H 1.08003 * 120.42260 * 359.97438 * 20 19 18 37 37 H 1.07993 * 120.79237 * 180.26455 * 21 20 19 38 38 H 1.08003 * 120.41796 * 179.70958 * 22 21 20 39 39 H 1.08000 * 119.61589 * 180.02562 * 23 22 21 40 40 H 1.09002 * 109.47329 * 274.60550 * 26 25 2 41 41 H 1.09005 * 109.47343 * 34.60719 * 26 25 2 42 42 H 1.09009 * 109.46999 * 154.60480 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 0.0064 5 6 3.5976 -0.6609 0.0008 6 6 4.8029 -1.4983 0.0013 7 8 4.7113 -2.6962 0.1941 8 7 6.0112 -0.9405 -0.2117 9 6 6.1260 0.5074 -0.4033 10 6 6.1371 1.1924 0.9389 11 1 5.9814 0.6176 1.8399 12 6 6.3459 2.5530 1.0168 13 7 6.3561 3.1508 2.1883 14 14 6.6157 3.5473 -0.5415 15 1 5.3077 4.0282 -1.0543 16 1 7.4879 4.7110 -0.2413 17 1 7.2658 2.6930 -1.5674 18 6 7.2097 -1.7820 -0.2517 19 6 7.4531 -2.2426 -1.6657 20 6 8.3178 -1.5315 -2.4765 21 6 8.5388 -1.9665 -3.7741 22 6 7.8706 -3.0995 -4.2131 23 6 7.0170 -3.7559 -3.3470 24 7 6.8347 -3.3161 -2.1171 25 7 2.2865 -1.0961 0.0005 26 6 1.8311 -2.4885 0.0016 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8903 -0.5134 30 1 4.3979 1.3722 0.0122 31 1 7.0518 0.7315 -0.9333 32 1 5.2776 0.8651 -0.9868 33 1 6.5034 4.1079 2.2430 34 1 8.0684 -1.2079 0.0964 35 1 7.0666 -2.6490 0.3933 36 1 8.8177 -0.6501 -2.1027 37 1 9.2123 -1.4334 -4.4288 38 1 8.0151 -3.4642 -5.2194 39 1 6.4932 -4.6393 -3.6811 40 1 1.6401 -2.8075 1.0263 41 1 0.9140 -2.5713 -0.5816 42 1 2.6005 -3.1227 -0.4390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826711403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:27 Heat of formation + Delta-G solvation = 70.024044 kcal Electronic energy + Delta-G solvation = -26592.874819 eV Core-core repulsion = 22960.481366 eV Total energy + Delta-G solvation = -3632.393453 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.22593 -41.27502 -40.12511 -37.27028 -34.94754 -34.78532 -33.53670 -33.18230 -32.32279 -30.29393 -29.09218 -27.80564 -26.93965 -24.81482 -24.31420 -23.52428 -22.75096 -21.15360 -20.20936 -19.15454 -18.06658 -17.83687 -17.50812 -17.11729 -17.04548 -16.78778 -16.51445 -16.17505 -15.48575 -15.28732 -14.82872 -14.71325 -14.46256 -14.26797 -14.18680 -14.13052 -13.91410 -13.71098 -13.26126 -13.23410 -13.11317 -12.87669 -12.72515 -12.61643 -12.16703 -11.98370 -11.71726 -11.26853 -10.87787 -10.80709 -10.72530 -10.59723 -10.36478 -9.97806 -9.58885 -9.32544 -8.31860 -6.38641 0.11669 0.39412 0.42040 1.38724 1.43516 1.48651 1.58222 1.88387 2.32122 2.34283 2.38535 2.99012 3.02671 3.37519 3.54003 3.60915 3.84435 3.92963 4.03314 4.12818 4.20558 4.26268 4.30248 4.45581 4.52937 4.59201 4.61766 4.69096 4.74241 4.75909 4.77334 4.82415 4.86724 5.05610 5.19299 5.24831 5.27676 5.35324 5.56979 5.72116 5.81579 6.14814 6.25630 6.45140 6.66253 6.99253 7.13812 7.17628 7.26821 8.83866 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.009191 B = 0.006709 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.891716 B = 4172.418171 C = 6316.239869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.220 3.780 3 N -0.542 5.542 4 C 0.023 3.977 5 C -0.118 4.118 6 C 0.593 3.407 7 O -0.573 6.573 8 N -0.577 5.577 9 C 0.201 3.799 10 C -0.534 4.534 11 H 0.031 0.969 12 C 0.031 3.969 13 N -0.930 5.930 14 Si 0.922 3.078 15 H -0.268 1.268 16 H -0.277 1.277 17 H -0.228 1.228 18 C 0.169 3.831 19 C 0.092 3.908 20 C -0.165 4.165 21 C -0.076 4.076 22 C -0.164 4.164 23 C 0.077 3.923 24 N -0.499 5.499 25 N -0.435 5.435 26 C 0.070 3.930 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.211 0.789 31 H 0.059 0.941 32 H 0.043 0.957 33 H 0.271 0.729 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.147 0.853 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.171 0.829 40 H 0.084 0.916 41 H 0.124 0.876 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 -10.143 -14.402 17.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.042 4.042 3 N -0.263 5.263 4 C -0.129 4.129 5 C -0.233 4.233 6 C 0.383 3.617 7 O -0.455 6.455 8 N -0.306 5.306 9 C 0.080 3.920 10 C -0.573 4.573 11 H 0.050 0.950 12 C -0.170 4.170 13 N -0.568 5.568 14 Si 0.744 3.256 15 H -0.193 1.193 16 H -0.202 1.202 17 H -0.151 1.151 18 C 0.046 3.954 19 C -0.046 4.046 20 C -0.185 4.185 21 C -0.102 4.102 22 C -0.184 4.184 23 C -0.080 4.080 24 N -0.209 5.209 25 N -0.118 5.118 26 C -0.070 4.070 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.125 0.875 30 H 0.227 0.773 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.128 0.872 35 H 0.096 0.904 36 H 0.165 0.835 37 H 0.186 0.814 38 H 0.188 0.812 39 H 0.188 0.812 40 H 0.103 0.897 41 H 0.142 0.858 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.809 -10.448 -13.636 17.596 hybrid contribution 1.178 0.408 -0.157 1.257 sum -2.631 -10.040 -13.793 17.262 Atomic orbital electron populations 1.20476 0.80585 1.05878 1.05119 1.24504 0.97755 0.80724 1.01213 1.70192 1.02920 1.29879 1.23264 1.24775 0.95920 0.93546 0.98621 1.20708 0.86023 0.95053 1.21486 1.16852 0.82791 0.85771 0.76274 1.90676 1.86875 1.15357 1.52618 1.47458 1.05153 1.08697 1.69288 1.20259 0.99096 0.76530 0.96122 1.21265 1.50220 0.93369 0.92400 0.95026 1.25679 0.93561 0.98434 0.99290 1.70020 1.49248 1.11193 1.26298 0.86102 0.79625 0.79484 0.80430 1.19255 1.20215 1.15069 1.20256 0.87857 0.95071 0.92189 1.21562 0.94005 0.91987 0.97046 1.22268 0.99509 1.01109 0.95655 1.22004 0.97733 0.95584 0.94903 1.22536 0.97198 0.96346 1.02298 1.23249 0.96307 0.99806 0.88655 1.67506 1.22344 1.13757 1.17321 1.45219 1.04262 1.09310 1.52973 1.22350 1.02653 0.77280 1.04749 0.88503 0.88275 0.87535 0.77349 0.92280 0.93941 0.91994 0.87183 0.90415 0.83532 0.81414 0.81248 0.81185 0.89749 0.85772 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.30 10.18 71.24 0.73 -0.57 16 2 C 0.22 7.77 7.88 138.20 1.09 8.85 16 3 N -0.54 -24.20 11.20 -187.39 -2.10 -26.30 16 4 C 0.02 1.14 9.18 84.10 0.77 1.91 16 5 C -0.12 -5.38 6.75 40.01 0.27 -5.11 16 6 C 0.59 27.63 7.55 86.47 0.65 28.28 16 7 O -0.57 -27.34 14.52 -4.29 -0.06 -27.40 16 8 N -0.58 -25.29 2.47 -835.14 -2.06 -27.34 16 9 C 0.20 9.07 3.82 85.63 0.33 9.40 16 10 C -0.53 -28.78 7.42 25.60 0.19 -28.59 16 11 H 0.03 1.99 8.06 -2.91 -0.02 1.96 16 12 C 0.03 1.70 5.19 84.65 0.44 2.14 16 13 N -0.93 -55.32 13.96 21.45 0.30 -55.02 16 14 Si 0.92 39.86 27.26 68.60 1.87 41.73 16 15 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 16 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.23 -8.56 6.39 99.48 0.64 -7.92 16 18 C 0.17 6.41 5.69 85.63 0.49 6.90 16 19 C 0.09 3.08 6.36 42.55 0.27 3.35 16 20 C -0.17 -4.39 9.72 22.36 0.22 -4.17 16 21 C -0.08 -1.54 10.18 22.47 0.23 -1.31 16 22 C -0.16 -3.14 10.11 22.36 0.23 -2.91 16 23 C 0.08 1.96 11.18 84.67 0.95 2.90 16 24 N -0.50 -17.11 10.27 -183.89 -1.89 -19.00 16 25 N -0.44 -16.10 3.17 -524.93 -1.67 -17.77 16 26 C 0.07 1.90 10.45 127.77 1.34 3.24 16 27 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.11 1.45 7.13 -2.39 -0.02 1.43 16 30 H 0.21 10.85 2.69 -2.91 -0.01 10.85 16 31 H 0.06 2.41 6.70 -2.39 -0.02 2.39 16 32 H 0.04 1.98 4.60 -2.39 -0.01 1.97 16 33 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 34 H 0.11 3.76 7.97 -2.39 -0.02 3.74 16 35 H 0.08 3.16 7.39 -2.39 -0.02 3.14 16 36 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 37 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 39 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 40 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.12 2.13 7.17 -2.38 -0.02 2.11 16 42 H 0.08 2.56 6.50 -2.38 -0.02 2.54 16 Total: -1.00 -79.41 348.32 3.56 -75.86 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.98 Total: 30.92 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: 8.18 Total: 24.32 kcal Atomic # 7 Polarization: -138.01 SS G_CDS: -7.41 Total: -145.42 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.06 Total: -27.40 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 1.87 Total: 41.73 kcal Total: -79.41 3.56 -75.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826711403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.880 kcal (2) G-P(sol) polarization free energy of solvation -79.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds