Wall clock time and date at job start Tue Mar 31 2020 11:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47477 * 2 1 4 4 C 1.50700 * 109.47422 * 239.99504 * 2 1 3 5 5 H 1.07997 * 120.00327 * 240.00298 * 4 2 1 6 6 C 1.37879 * 119.99871 * 60.00326 * 4 2 1 7 7 N 1.31517 * 119.99943 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00346 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47014 * 89.99603 * 8 6 4 10 10 H 1.48497 * 109.47213 * 210.00236 * 8 6 4 11 11 H 1.48506 * 109.46911 * 330.00051 * 8 6 4 12 12 C 1.53001 * 109.47070 * 119.99579 * 2 1 3 13 13 N 1.46500 * 109.47299 * 300.00228 * 12 2 1 14 14 C 1.34773 * 119.99885 * 180.27245 * 13 12 2 15 15 O 1.21583 * 120.00217 * 359.72003 * 14 13 12 16 16 C 1.47591 * 119.99693 * 179.72500 * 14 13 12 17 17 C 1.39971 * 120.59878 * 5.64115 * 16 14 13 18 18 C 1.38356 * 118.35206 * 180.02562 * 17 16 14 19 19 C 1.38394 * 119.44843 * 0.02562 * 18 17 16 20 20 N 1.31841 * 121.18564 * 359.97438 * 19 18 17 21 21 C 1.32258 * 121.79935 * 359.70177 * 20 19 18 22 22 N 1.39357 * 119.79529 * 180.31341 * 21 20 19 23 23 C 1.35936 * 126.10587 * 66.47957 * 22 21 20 24 24 C 1.35240 * 107.59993 * 179.87510 * 23 22 21 25 25 C 1.40010 * 107.97192 * 0.38814 * 24 23 22 26 26 N 1.30788 * 108.38078 * 359.76091 * 25 24 23 27 27 H 1.08994 * 109.47696 * 300.00463 * 1 2 3 28 28 H 1.09004 * 109.47349 * 60.00231 * 1 2 3 29 29 H 1.08996 * 109.47391 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47477 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46642 * 300.00202 * 3 2 1 32 32 H 1.09002 * 109.46983 * 59.99417 * 3 2 1 33 33 H 0.97000 * 119.99906 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47689 * 179.97438 * 12 2 1 35 35 H 1.09009 * 109.46844 * 60.00168 * 12 2 1 36 36 H 0.96997 * 120.00056 * 359.97438 * 13 12 2 37 37 H 1.08006 * 120.82416 * 359.97438 * 17 16 14 38 38 H 1.08000 * 120.27293 * 180.02562 * 18 17 16 39 39 H 1.07998 * 119.40434 * 180.02562 * 19 18 17 40 40 H 1.08000 * 126.20480 * 0.02631 * 23 22 21 41 41 H 1.08003 * 126.01416 * 180.14857 * 24 23 22 42 42 H 1.07996 * 125.80812 * 179.73566 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3226 -1.1197 -4.0079 9 1 1.3450 -2.1617 -4.4123 10 1 2.4875 -0.1404 -5.1119 11 1 3.6310 -1.7567 -3.7118 12 6 2.0399 -0.7212 1.2493 13 7 1.5515 -0.0305 2.4454 14 6 1.8817 -0.4877 3.6695 15 8 2.5806 -1.4763 3.7812 16 6 1.3947 0.2116 4.8745 17 6 0.4953 1.2785 4.7645 18 6 0.0694 1.9011 5.9243 19 6 0.5401 1.4565 7.1475 20 7 1.3872 0.4494 7.2279 21 6 1.8207 -0.1843 6.1510 22 7 2.7110 -1.2480 6.2849 23 6 2.4430 -2.4491 6.8621 24 6 3.5663 -3.1985 6.7873 25 6 4.5542 -2.4342 6.1548 26 7 4.0440 -1.2681 5.8542 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.7091 1.1613 -3.4845 34 1 3.1299 -0.7216 1.2492 35 1 1.6765 -1.7489 1.2493 36 1 0.9942 0.7583 2.3564 37 1 0.1432 1.6081 3.7981 38 1 -0.6245 2.7272 5.8755 39 1 0.2069 1.9428 8.0524 40 1 1.5026 -2.7513 7.2989 41 1 3.6821 -4.2075 7.1547 42 1 5.5655 -2.7531 5.9504 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837889870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:02 Heat of formation + Delta-G solvation = 100.134019 kcal Electronic energy + Delta-G solvation = -25989.946350 eV Core-core repulsion = 22358.858564 eV Total energy + Delta-G solvation = -3631.087786 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.50682 -40.17978 -38.87245 -36.39400 -33.97762 -33.28927 -32.70476 -30.85015 -30.16499 -29.48638 -26.00897 -25.78917 -25.28845 -24.31584 -23.88944 -21.10226 -20.95242 -20.51597 -18.95303 -18.38676 -17.64289 -17.05510 -15.93817 -15.65603 -15.12987 -15.06933 -14.75581 -14.50632 -14.27160 -14.11228 -13.79496 -13.38768 -13.24116 -12.98445 -12.77359 -12.68078 -12.65102 -12.22960 -11.44832 -11.24354 -10.90607 -10.72458 -10.65394 -10.45032 -10.35298 -10.27411 -10.22820 -9.78524 -9.69274 -9.56730 -9.32242 -9.17051 -8.84337 -8.49978 -8.46142 -8.35851 -6.05853 -4.15759 0.28414 0.69644 2.01624 2.28274 2.90471 3.05099 3.26451 3.33472 3.36575 3.45705 3.63544 4.23668 4.36999 4.38454 4.50405 4.54490 4.78547 4.99497 5.08609 5.20076 5.21249 5.48316 5.65013 5.68455 5.81531 6.01516 6.07752 6.17513 6.27584 6.44369 6.71154 6.74437 6.76758 6.86646 6.93057 6.96322 7.16567 7.29474 7.39459 7.49845 7.65393 7.83382 7.92793 7.95536 8.09218 8.33658 8.57247 8.84699 9.50270 10.95690 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.003571 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.127485 B = 7838.900061 C = 9068.724774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.135 3.865 13 N -0.709 5.709 14 C 0.545 3.455 15 O -0.516 6.516 16 C -0.152 4.152 17 C -0.037 4.037 18 C -0.169 4.169 19 C 0.134 3.866 20 N -0.488 5.488 21 C 0.405 3.595 22 N -0.321 5.321 23 C 0.073 3.927 24 C -0.261 4.261 25 C 0.052 3.948 26 N -0.246 5.246 27 H 0.004 0.996 28 H 0.086 0.914 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.004 0.996 33 H 0.260 0.740 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.395 0.605 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.170 0.830 40 H 0.168 0.832 41 H 0.149 0.851 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.176 1.424 18.384 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.013 3.987 13 N -0.360 5.360 14 C 0.329 3.671 15 O -0.392 6.392 16 C -0.160 4.160 17 C -0.063 4.063 18 C -0.190 4.190 19 C -0.025 4.025 20 N -0.199 5.199 21 C 0.178 3.822 22 N -0.101 5.101 23 C -0.069 4.069 24 C -0.290 4.290 25 C -0.138 4.138 26 N -0.064 5.064 27 H 0.023 0.977 28 H 0.105 0.895 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.231 0.769 37 H 0.168 0.832 38 H 0.169 0.831 39 H 0.187 0.813 40 H 0.186 0.814 41 H 0.167 0.833 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.300 1.749 18.556 18.779 hybrid contribution -0.505 -0.558 -1.357 1.552 sum -2.804 1.190 17.199 17.467 Atomic orbital electron populations 1.21831 0.97760 0.99217 0.99977 1.18370 0.92779 0.92801 0.90555 1.21833 0.98726 0.98280 0.99975 1.20966 1.31525 1.12115 0.89810 0.92405 1.24872 0.94832 0.94891 0.98859 1.69796 1.36726 1.22703 1.23265 0.86562 0.79372 0.79385 0.82523 1.20697 1.21238 1.19863 1.21758 0.98337 0.95722 0.82916 1.46205 1.52368 1.31729 1.05726 1.17787 0.81545 0.84866 0.82944 1.90834 1.36594 1.25399 1.86372 1.21167 1.00559 0.99415 0.94885 1.21901 0.92406 0.91694 1.00345 1.22238 1.02033 1.01858 0.92827 1.22804 0.90727 0.90674 0.98265 1.67206 1.12303 1.08412 1.32012 1.17395 0.89212 0.87801 0.87790 1.45096 1.09006 1.09410 1.46581 1.22554 1.00527 0.85686 0.98143 1.21426 0.93305 1.02279 1.11948 1.23895 1.00338 0.91601 0.97925 1.77495 0.87816 1.22095 1.19015 0.97737 0.89494 0.95379 0.95335 0.89495 0.97716 0.92985 0.92461 0.92568 0.76935 0.83219 0.83137 0.81264 0.81430 0.83306 0.79860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.08 37.15 0.30 -2.55 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 4 C -0.51 -13.14 8.01 -34.44 -0.28 -13.41 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.27 9.35 55.43 0.52 -22.75 16 8 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.13 2.87 4.50 -4.04 -0.02 2.85 16 13 N -0.71 -12.71 4.91 -61.33 -0.30 -13.01 16 14 C 0.54 10.01 7.76 -12.45 -0.10 9.92 16 15 O -0.52 -11.13 13.70 5.29 0.07 -11.05 16 16 C -0.15 -2.28 5.90 -104.67 -0.62 -2.90 16 17 C -0.04 -0.40 9.63 -38.89 -0.37 -0.77 16 18 C -0.17 -1.36 10.09 -39.48 -0.40 -1.75 16 19 C 0.13 1.20 11.17 -17.49 -0.20 1.00 16 20 N -0.49 -6.38 10.37 -12.03 -0.12 -6.50 16 21 C 0.41 6.25 7.06 -154.36 -1.09 5.16 16 22 N -0.32 -5.35 2.37 -11.89 -0.03 -5.38 16 23 C 0.07 1.03 11.47 -16.80 -0.19 0.83 16 24 C -0.26 -3.41 10.80 -39.99 -0.43 -3.85 16 25 C 0.05 0.76 12.02 -17.33 -0.21 0.55 16 26 N -0.25 -4.43 10.75 30.64 0.33 -4.10 16 27 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 28 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 32 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 33 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.26 8.14 -51.92 -0.42 0.83 16 36 H 0.39 6.20 4.30 -40.82 -0.18 6.03 16 37 H 0.15 1.35 6.56 -52.48 -0.34 1.01 16 38 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.17 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.15 1.47 8.06 -52.48 -0.42 1.04 16 42 H 0.18 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 348.16 15.07 5.25 5.25 Total: -1.00 -32.51 348.16 -7.99 -40.50 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.21 Total: 6.15 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -3.47 Total: -4.68 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.39 Total: -51.74 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.07 Total: -11.05 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.51 -7.99 -40.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837889870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.635 kcal (2) G-P(sol) polarization free energy of solvation -32.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds