Wall clock time and date at job start Tue Mar 31 2020 11:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47477 * 2 1 4 4 C 1.50700 * 109.47422 * 239.99504 * 2 1 3 5 5 H 1.07997 * 120.00327 * 240.00298 * 4 2 1 6 6 C 1.37879 * 119.99871 * 60.00326 * 4 2 1 7 7 N 1.31517 * 119.99943 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00346 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47014 * 89.99603 * 8 6 4 10 10 H 1.48497 * 109.47213 * 210.00236 * 8 6 4 11 11 H 1.48506 * 109.46911 * 330.00051 * 8 6 4 12 12 C 1.53001 * 109.47070 * 119.99579 * 2 1 3 13 13 N 1.46500 * 109.47299 * 300.00228 * 12 2 1 14 14 C 1.34773 * 119.99885 * 180.27245 * 13 12 2 15 15 O 1.21583 * 120.00217 * 359.72003 * 14 13 12 16 16 C 1.47591 * 119.99693 * 179.72500 * 14 13 12 17 17 C 1.39971 * 120.59878 * 5.64115 * 16 14 13 18 18 C 1.38356 * 118.35206 * 180.02562 * 17 16 14 19 19 C 1.38394 * 119.44843 * 0.02562 * 18 17 16 20 20 N 1.31841 * 121.18564 * 359.97438 * 19 18 17 21 21 C 1.32258 * 121.79935 * 359.70177 * 20 19 18 22 22 N 1.39357 * 119.79529 * 180.31341 * 21 20 19 23 23 C 1.35936 * 126.10587 * 66.47957 * 22 21 20 24 24 C 1.35240 * 107.59993 * 179.87510 * 23 22 21 25 25 C 1.40010 * 107.97192 * 0.38814 * 24 23 22 26 26 N 1.30788 * 108.38078 * 359.76091 * 25 24 23 27 27 H 1.08994 * 109.47696 * 300.00463 * 1 2 3 28 28 H 1.09004 * 109.47349 * 60.00231 * 1 2 3 29 29 H 1.08996 * 109.47391 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47477 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46642 * 300.00202 * 3 2 1 32 32 H 1.09002 * 109.46983 * 59.99417 * 3 2 1 33 33 H 0.97000 * 119.99906 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47689 * 179.97438 * 12 2 1 35 35 H 1.09009 * 109.46844 * 60.00168 * 12 2 1 36 36 H 0.96997 * 120.00056 * 359.97438 * 13 12 2 37 37 H 1.08006 * 120.82416 * 359.97438 * 17 16 14 38 38 H 1.08000 * 120.27293 * 180.02562 * 18 17 16 39 39 H 1.07998 * 119.40434 * 180.02562 * 19 18 17 40 40 H 1.08000 * 126.20480 * 0.02631 * 23 22 21 41 41 H 1.08003 * 126.01416 * 180.14857 * 24 23 22 42 42 H 1.07996 * 125.80812 * 179.73566 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3226 -1.1197 -4.0079 9 1 1.3450 -2.1617 -4.4123 10 1 2.4875 -0.1404 -5.1119 11 1 3.6310 -1.7567 -3.7118 12 6 2.0399 -0.7212 1.2493 13 7 1.5515 -0.0305 2.4454 14 6 1.8817 -0.4877 3.6695 15 8 2.5806 -1.4763 3.7812 16 6 1.3947 0.2116 4.8745 17 6 0.4953 1.2785 4.7645 18 6 0.0694 1.9011 5.9243 19 6 0.5401 1.4565 7.1475 20 7 1.3872 0.4494 7.2279 21 6 1.8207 -0.1843 6.1510 22 7 2.7110 -1.2480 6.2849 23 6 2.4430 -2.4491 6.8621 24 6 3.5663 -3.1985 6.7873 25 6 4.5542 -2.4342 6.1548 26 7 4.0440 -1.2681 5.8542 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.7091 1.1613 -3.4845 34 1 3.1299 -0.7216 1.2492 35 1 1.6765 -1.7489 1.2493 36 1 0.9942 0.7583 2.3564 37 1 0.1432 1.6081 3.7981 38 1 -0.6245 2.7272 5.8755 39 1 0.2069 1.9428 8.0524 40 1 1.5026 -2.7513 7.2989 41 1 3.6821 -4.2075 7.1547 42 1 5.5655 -2.7531 5.9504 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837889870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:01 Heat of formation + Delta-G solvation = 80.300784 kcal Electronic energy + Delta-G solvation = -25990.806384 eV Core-core repulsion = 22358.858564 eV Total energy + Delta-G solvation = -3631.947820 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.53036 -41.23600 -40.19005 -38.12365 -35.30569 -34.48330 -33.88630 -32.55758 -31.22227 -30.49456 -27.62413 -27.59411 -27.07292 -25.38241 -24.96764 -22.22012 -22.01971 -21.75924 -20.67412 -19.47897 -18.89542 -18.03321 -17.78379 -16.70933 -16.50907 -16.45028 -16.35883 -15.64706 -15.47174 -15.20691 -14.94505 -14.83473 -14.52141 -14.29541 -14.23520 -13.93010 -13.64405 -13.60000 -13.22754 -13.11672 -12.71613 -12.62248 -12.28211 -12.15601 -11.72716 -11.52482 -11.36057 -11.27725 -11.18790 -10.95344 -10.74147 -10.53870 -10.41907 -10.24420 -9.95714 -9.49901 -8.04545 -6.19876 -0.65084 -0.12510 0.97822 1.33260 1.41159 1.44266 1.52364 1.78491 1.99813 2.09362 2.45938 2.57696 3.19273 3.36882 3.47640 3.61311 3.75888 3.90646 4.06888 4.18880 4.30747 4.42969 4.45367 4.64154 4.67645 4.79416 4.81544 4.91889 4.95383 5.01250 5.07205 5.09314 5.15656 5.29110 5.34634 5.51386 5.64348 5.65393 5.75931 6.12536 6.17605 6.18173 6.40957 6.49796 6.56893 6.77991 6.83008 7.18240 7.47714 8.94468 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.003571 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.127485 B = 7838.900061 C = 9068.724774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.052 3.948 3 C -0.120 4.120 4 C -0.530 4.530 5 H 0.041 0.959 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.278 1.278 12 C 0.154 3.846 13 N -0.701 5.701 14 C 0.542 3.458 15 O -0.555 6.555 16 C -0.180 4.180 17 C -0.036 4.036 18 C -0.144 4.144 19 C 0.141 3.859 20 N -0.508 5.508 21 C 0.377 3.623 22 N -0.333 5.333 23 C 0.059 3.941 24 C -0.262 4.262 25 C 0.041 3.959 26 N -0.301 5.301 27 H 0.039 0.961 28 H 0.065 0.935 29 H 0.017 0.983 30 H 0.014 0.986 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.261 0.739 34 H 0.033 0.967 35 H 0.038 0.962 36 H 0.407 0.593 37 H 0.169 0.831 38 H 0.201 0.799 39 H 0.215 0.785 40 H 0.193 0.807 41 H 0.180 0.820 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.082 2.983 20.046 20.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 C -0.178 4.178 4 C -0.569 4.569 5 H 0.059 0.941 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.770 3.230 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.030 3.970 13 N -0.354 5.354 14 C 0.329 3.671 15 O -0.434 6.434 16 C -0.188 4.188 17 C -0.063 4.063 18 C -0.163 4.163 19 C -0.017 4.017 20 N -0.219 5.219 21 C 0.151 3.849 22 N -0.113 5.113 23 C -0.083 4.083 24 C -0.290 4.290 25 C -0.148 4.148 26 N -0.119 5.119 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.036 0.964 30 H 0.033 0.967 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.245 0.755 37 H 0.186 0.814 38 H 0.218 0.782 39 H 0.231 0.769 40 H 0.210 0.790 41 H 0.197 0.803 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.224 3.330 20.224 20.927 hybrid contribution 0.026 -0.972 -1.765 2.015 sum -4.198 2.358 18.459 19.076 Atomic orbital electron populations 1.21659 0.96723 0.98743 1.00583 1.18364 0.93524 0.92999 0.89985 1.21672 0.97786 0.97807 1.00516 1.21234 1.31853 1.12174 0.91623 0.94052 1.25407 0.95100 0.95561 1.00809 1.69886 1.36890 1.23086 1.23671 0.85784 0.78612 0.78571 0.79992 1.20391 1.20651 1.20347 1.21258 0.96743 0.95024 0.83931 1.45943 1.52657 1.31967 1.04819 1.18352 0.80575 0.84423 0.83785 1.90804 1.38306 1.27300 1.87015 1.20927 1.03327 1.01626 0.92945 1.22216 0.91180 0.90357 1.02524 1.22759 1.00910 1.01607 0.91028 1.23723 0.88534 0.88843 1.00591 1.67287 1.13690 1.09751 1.31197 1.17649 0.90021 0.88582 0.88601 1.45293 1.08755 1.10476 1.46745 1.23151 1.01862 0.85341 0.97953 1.21839 0.92522 1.03378 1.11305 1.24447 1.01710 0.91229 0.97377 1.77372 0.89408 1.24023 1.21133 0.94221 0.91632 0.96359 0.96666 0.91550 0.94401 0.92928 0.94856 0.94379 0.75462 0.81403 0.78214 0.76869 0.78988 0.80286 0.77635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 8.08 71.98 0.58 -4.57 16 2 C 0.05 2.39 0.50 -52.93 -0.03 2.37 16 3 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 4 C -0.53 -28.19 8.01 25.60 0.21 -27.98 16 5 H 0.04 2.27 7.74 -2.91 -0.02 2.25 16 6 C 0.03 1.64 5.15 84.65 0.44 2.08 16 7 N -0.90 -47.11 9.35 21.45 0.20 -46.91 16 8 Si 0.94 42.60 29.54 68.60 2.03 44.63 16 9 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 C 0.15 6.74 4.50 86.38 0.39 7.13 16 13 N -0.70 -25.00 4.91 -466.20 -2.29 -27.29 16 14 C 0.54 20.24 7.76 86.71 0.67 20.91 16 15 O -0.56 -25.03 13.70 -3.98 -0.05 -25.09 16 16 C -0.18 -5.26 5.90 -19.89 -0.12 -5.37 16 17 C -0.04 -0.67 9.63 22.72 0.22 -0.45 16 18 C -0.14 -1.56 10.09 22.34 0.23 -1.34 16 19 C 0.14 1.92 11.17 84.73 0.95 2.87 16 20 N -0.51 -12.28 10.37 -191.96 -1.99 -14.27 16 21 C 0.38 11.49 7.06 133.26 0.94 12.44 16 22 N -0.33 -11.30 2.37 -191.53 -0.45 -11.76 16 23 C 0.06 1.66 11.47 83.37 0.96 2.62 16 24 C -0.26 -6.84 10.80 22.01 0.24 -6.61 16 25 C 0.04 1.23 12.02 85.28 1.02 2.26 16 26 N -0.30 -11.26 10.75 -56.96 -0.61 -11.88 16 27 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 28 H 0.06 3.14 6.07 -2.38 -0.01 3.13 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 3.23 6.07 -2.38 -0.01 3.21 16 32 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 33 H 0.26 13.20 8.31 -92.71 -0.77 12.43 16 34 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.41 12.05 4.30 -92.71 -0.40 11.65 16 37 H 0.17 2.36 6.56 -2.91 -0.02 2.34 16 38 H 0.20 0.26 8.06 -2.91 -0.02 0.23 16 39 H 0.21 0.89 8.06 -2.91 -0.02 0.87 16 40 H 0.19 4.10 8.06 -2.91 -0.02 4.07 16 41 H 0.18 3.31 8.06 -2.91 -0.02 3.28 16 42 H 0.21 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -75.31 348.16 4.75 -70.56 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.65 Total: 20.38 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 7.27 Total: 1.63 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -5.15 Total: -112.10 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.05 Total: -25.09 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -75.31 4.75 -70.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837889870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.858 kcal (2) G-P(sol) polarization free energy of solvation -75.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds