Wall clock time and date at job start Tue Mar 31 2020 10:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46666 * 2 1 4 4 C 1.50698 * 109.47116 * 119.99712 * 2 1 3 5 5 N 1.30448 * 125.98954 * 299.97972 * 4 2 1 6 6 N 1.39926 * 108.90491 * 180.02562 * 5 4 2 7 7 C 1.46506 * 125.75423 * 179.97438 * 6 5 4 8 8 C 1.34261 * 108.49782 * 359.76767 * 6 5 4 9 9 C 1.38077 * 107.41018 * 0.36824 * 8 6 5 10 10 C 1.47384 * 126.41750 * 179.89648 * 9 8 6 11 11 O 1.21598 * 120.00215 * 179.68717 * 10 9 8 12 12 N 1.34786 * 120.00079 * 359.68597 * 10 9 8 13 13 C 1.39178 * 120.00047 * 185.59881 * 12 10 9 14 14 C 1.39701 * 119.57607 * 18.98030 * 13 12 10 15 15 C 1.38644 * 119.49075 * 179.97438 * 14 13 12 16 16 C 1.38347 * 118.67689 * 359.97438 * 15 14 13 17 17 C 1.40579 * 119.13402 * 0.02562 * 16 15 14 18 18 C 1.41328 * 119.78892 * 179.97438 * 17 16 15 19 19 H 1.08006 * 120.00008 * 7.19680 * 18 17 16 20 20 C 1.40027 * 120.00327 * 187.19282 * 18 17 16 21 21 N 1.30744 * 119.99501 * 7.23812 * 20 18 17 22 22 Si 1.86798 * 120.00398 * 187.23611 * 20 18 17 23 23 H 1.48500 * 109.46961 * 265.01587 * 22 20 18 24 24 H 1.48499 * 109.46906 * 25.01066 * 22 20 18 25 25 H 1.48490 * 109.47181 * 145.01161 * 22 20 18 26 26 N 1.31918 * 119.57807 * 199.25422 * 13 12 10 27 27 H 1.09000 * 109.46851 * 60.00338 * 1 2 3 28 28 H 1.09002 * 109.47017 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47614 * 299.99949 * 1 2 3 30 30 H 1.08995 * 109.47614 * 240.00051 * 2 1 3 31 31 H 1.08998 * 109.46658 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46722 * 299.99651 * 3 2 1 33 33 H 1.08995 * 109.47062 * 59.99714 * 3 2 1 34 34 H 1.09001 * 109.46686 * 89.97684 * 7 6 5 35 35 H 1.08995 * 109.47144 * 209.97765 * 7 6 5 36 36 H 1.09001 * 109.46942 * 329.98228 * 7 6 5 37 37 H 1.08002 * 126.29756 * 180.23152 * 8 6 5 38 38 H 0.97002 * 119.99499 * 5.60696 * 12 10 9 39 39 H 1.08001 * 120.25175 * 359.97438 * 14 13 12 40 40 H 1.08009 * 120.66131 * 179.97438 * 15 14 13 41 41 H 1.07997 * 120.43341 * 180.02562 * 16 15 14 42 42 H 0.97000 * 119.99649 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7906 -0.3678 2.4657 6 7 2.4306 -1.2720 3.3205 7 6 2.4034 -1.2318 4.7848 8 6 3.0700 -2.1855 2.5727 9 6 2.8482 -1.8638 1.2484 10 6 3.3612 -2.5911 0.0736 11 8 3.0875 -2.2062 -1.0470 12 7 4.1337 -3.6828 0.2412 13 6 4.7136 -4.3011 -0.8627 14 6 4.8354 -3.5964 -2.0628 15 6 5.4139 -4.2139 -3.1611 16 6 5.8563 -5.5184 -3.0328 17 6 5.7054 -6.1739 -1.7984 18 6 6.1520 -7.5068 -1.6520 19 1 6.7105 -7.9795 -2.4465 20 6 5.8704 -8.2146 -0.4771 21 7 5.0770 -7.6966 0.4238 22 14 6.6283 -9.8987 -0.1967 23 1 5.6761 -10.9496 -0.6374 24 1 7.8863 -10.0116 -0.9778 25 1 6.9251 -10.0738 1.2477 26 7 5.1364 -5.5468 -0.7638 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8899 34 1 1.5573 -1.8147 5.1486 35 1 3.3295 -1.6518 5.1770 36 1 2.3031 -0.1988 5.1180 37 1 3.6528 -3.0176 2.9395 38 1 4.2853 -4.0376 1.1312 39 1 4.4816 -2.5785 -2.1344 40 1 5.5171 -3.6869 -4.0983 41 1 6.3116 -6.0265 -3.8699 42 1 4.8816 -8.1870 1.2375 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882470803.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:57 Heat of formation + Delta-G solvation = 76.867894 kcal Electronic energy + Delta-G solvation = -25531.826648 eV Core-core repulsion = 21899.729968 eV Total energy + Delta-G solvation = -3632.096681 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.48191 -39.40653 -37.54574 -35.79932 -34.17656 -33.28380 -32.51406 -30.61746 -30.34118 -28.89276 -27.07224 -27.05565 -25.47057 -23.46992 -22.28016 -21.59083 -21.31886 -19.60118 -19.09331 -17.74366 -17.34324 -16.18568 -15.86710 -15.76964 -14.88243 -14.74648 -14.65039 -14.46588 -14.25789 -13.94846 -13.59226 -13.34413 -13.04705 -12.99927 -12.78909 -12.53628 -12.25764 -12.07086 -11.92017 -11.38665 -11.27826 -11.12464 -11.11262 -10.98530 -10.88598 -10.63254 -10.46513 -10.14469 -9.77733 -9.39047 -9.18835 -8.86954 -8.63273 -8.03370 -7.65404 -7.05268 -6.46554 -4.48149 1.49436 2.18509 2.26590 2.79019 3.00872 3.08342 3.12254 3.25414 3.69880 3.86922 3.95102 4.25066 4.55391 4.73160 4.79114 4.87156 5.04029 5.12203 5.23696 5.27983 5.44467 5.60029 5.63868 5.71081 5.90144 5.93462 5.96883 6.08264 6.20273 6.32126 6.34342 6.46771 6.60467 6.73828 6.80641 6.84858 6.91430 7.14763 7.51816 7.52474 7.60094 7.89947 7.95014 8.16159 8.33145 8.69923 8.78135 8.99293 10.05227 10.31229 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.003541 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.360461 B = 7904.456011 C = 9249.405750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 C -0.138 4.138 4 C 0.143 3.857 5 N -0.300 5.300 6 N -0.365 5.365 7 C 0.099 3.901 8 C 0.100 3.900 9 C -0.279 4.279 10 C 0.594 3.406 11 O -0.520 6.520 12 N -0.644 5.644 13 C 0.359 3.641 14 C -0.310 4.310 15 C -0.049 4.049 16 C -0.289 4.289 17 C 0.282 3.718 18 C -0.439 4.439 19 H 0.085 0.915 20 C 0.075 3.925 21 N -0.727 5.727 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.261 1.261 25 H -0.277 1.277 26 N -0.510 5.510 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.120 0.880 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.185 0.815 38 H 0.402 0.598 39 H 0.133 0.867 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.148 11.114 9.244 15.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.053 4.053 3 C -0.196 4.196 4 C -0.025 4.025 5 N -0.121 5.121 6 N -0.143 5.143 7 C -0.042 4.042 8 C -0.052 4.052 9 C -0.294 4.294 10 C 0.381 3.619 11 O -0.397 6.397 12 N -0.287 5.287 13 C 0.125 3.875 14 C -0.334 4.334 15 C -0.074 4.074 16 C -0.312 4.312 17 C 0.155 3.845 18 C -0.471 4.471 19 H 0.103 0.897 20 C -0.150 4.150 21 N -0.349 5.349 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.185 1.185 25 H -0.202 1.202 26 N -0.229 5.229 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.138 0.862 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.202 0.798 38 H 0.237 0.763 39 H 0.150 0.850 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.130 11.759 10.425 16.868 hybrid contribution 0.940 -1.359 -0.351 1.689 sum -5.190 10.400 10.074 15.381 Atomic orbital electron populations 1.21768 0.94044 1.02001 1.01791 1.20003 0.95873 0.95660 0.93735 1.21767 1.01200 0.94799 1.01796 1.22366 0.93836 0.92952 0.93327 1.77103 1.20377 1.14464 1.00118 1.48272 1.38228 1.20827 1.06973 1.21955 1.03749 1.04866 0.73674 1.23168 0.96324 0.94627 0.91041 1.20261 1.13242 1.03508 0.92405 1.17122 0.77511 0.79582 0.87674 1.90609 1.57538 1.67170 1.24425 1.43004 1.48103 1.27747 1.09836 1.18444 0.93274 0.90261 0.85554 1.21630 1.14957 1.02746 0.94085 1.20818 0.95442 0.94469 0.96681 1.21712 1.13632 0.96791 0.99093 1.18149 0.87842 0.92695 0.85769 1.19538 1.30518 0.95598 1.01424 0.89708 1.26001 0.93919 0.99481 0.95551 1.70071 1.23513 1.35469 1.05806 0.86349 0.80401 0.81916 0.78333 1.19609 1.18485 1.20184 1.67987 1.17959 1.04543 1.32386 0.92029 0.92654 0.92603 0.86200 0.92663 0.92033 0.92614 0.90360 0.89079 0.89043 0.79831 0.76287 0.84966 0.88321 0.88273 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.18 37.16 0.34 -1.33 16 2 C -0.03 -0.45 3.26 -91.77 -0.30 -0.75 16 3 C -0.14 -1.64 9.18 37.16 0.34 -1.29 16 4 C 0.14 2.16 5.77 -82.02 -0.47 1.69 16 5 N -0.30 -4.22 12.50 33.90 0.42 -3.79 16 6 N -0.37 -4.21 3.98 -67.59 -0.27 -4.48 16 7 C 0.10 0.64 11.44 59.85 0.68 1.32 16 8 C 0.10 1.23 11.00 -16.55 -0.18 1.05 16 9 C -0.28 -4.41 6.13 -105.07 -0.64 -5.05 16 10 C 0.59 11.42 7.65 -12.53 -0.10 11.32 16 11 O -0.52 -11.22 11.36 5.28 0.06 -11.16 16 12 N -0.64 -13.11 5.39 -12.39 -0.07 -13.18 16 13 C 0.36 8.93 7.51 -155.04 -1.16 7.76 16 14 C -0.31 -7.58 8.83 -38.89 -0.34 -7.93 16 15 C -0.05 -1.17 10.15 -39.39 -0.40 -1.57 16 16 C -0.29 -7.30 9.83 -38.66 -0.38 -7.68 16 17 C 0.28 7.76 6.52 -85.00 -0.55 7.21 16 18 C -0.44 -11.69 9.13 -37.74 -0.34 -12.03 16 19 H 0.08 2.12 7.86 -52.48 -0.41 1.71 16 20 C 0.07 1.88 5.47 -17.34 -0.09 1.78 16 21 N -0.73 -18.75 11.56 55.55 0.64 -18.11 16 22 Si 0.91 18.31 29.57 -169.99 -5.03 13.29 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 25 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 26 N -0.51 -13.87 7.99 -10.27 -0.08 -13.95 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.12 1.93 5.60 -51.93 -0.29 1.64 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.18 1.67 7.47 -52.49 -0.39 1.28 16 38 H 0.40 7.18 7.76 -40.82 -0.32 6.87 16 39 H 0.13 3.18 5.33 -52.50 -0.28 2.90 16 40 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 41 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 42 H 0.27 6.30 8.29 -40.82 -0.34 5.96 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -33.11 356.42 -8.03 -41.14 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.48 Total: 10.38 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -3.61 Total: -5.52 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.65 Total: -53.50 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.06 Total: -11.16 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.11 -8.03 -41.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882470803.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.011 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds