Wall clock time and date at job start Tue Mar 31 2020 10:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46666 * 2 1 4 4 C 1.50698 * 109.47116 * 119.99712 * 2 1 3 5 5 N 1.30448 * 125.98954 * 299.97972 * 4 2 1 6 6 N 1.39926 * 108.90491 * 180.02562 * 5 4 2 7 7 C 1.46506 * 125.75423 * 179.97438 * 6 5 4 8 8 C 1.34261 * 108.49782 * 359.76767 * 6 5 4 9 9 C 1.38077 * 107.41018 * 0.36824 * 8 6 5 10 10 C 1.47384 * 126.41750 * 179.89648 * 9 8 6 11 11 O 1.21598 * 120.00215 * 179.68717 * 10 9 8 12 12 N 1.34786 * 120.00079 * 359.68597 * 10 9 8 13 13 C 1.39178 * 120.00047 * 185.59881 * 12 10 9 14 14 C 1.39701 * 119.57607 * 18.98030 * 13 12 10 15 15 C 1.38644 * 119.49075 * 179.97438 * 14 13 12 16 16 C 1.38347 * 118.67689 * 359.97438 * 15 14 13 17 17 C 1.40579 * 119.13402 * 0.02562 * 16 15 14 18 18 C 1.41328 * 119.78892 * 179.97438 * 17 16 15 19 19 H 1.08006 * 120.00008 * 7.19680 * 18 17 16 20 20 C 1.40027 * 120.00327 * 187.19282 * 18 17 16 21 21 N 1.30744 * 119.99501 * 7.23812 * 20 18 17 22 22 Si 1.86798 * 120.00398 * 187.23611 * 20 18 17 23 23 H 1.48500 * 109.46961 * 265.01587 * 22 20 18 24 24 H 1.48499 * 109.46906 * 25.01066 * 22 20 18 25 25 H 1.48490 * 109.47181 * 145.01161 * 22 20 18 26 26 N 1.31918 * 119.57807 * 199.25422 * 13 12 10 27 27 H 1.09000 * 109.46851 * 60.00338 * 1 2 3 28 28 H 1.09002 * 109.47017 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47614 * 299.99949 * 1 2 3 30 30 H 1.08995 * 109.47614 * 240.00051 * 2 1 3 31 31 H 1.08998 * 109.46658 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46722 * 299.99651 * 3 2 1 33 33 H 1.08995 * 109.47062 * 59.99714 * 3 2 1 34 34 H 1.09001 * 109.46686 * 89.97684 * 7 6 5 35 35 H 1.08995 * 109.47144 * 209.97765 * 7 6 5 36 36 H 1.09001 * 109.46942 * 329.98228 * 7 6 5 37 37 H 1.08002 * 126.29756 * 180.23152 * 8 6 5 38 38 H 0.97002 * 119.99499 * 5.60696 * 12 10 9 39 39 H 1.08001 * 120.25175 * 359.97438 * 14 13 12 40 40 H 1.08009 * 120.66131 * 179.97438 * 15 14 13 41 41 H 1.07997 * 120.43341 * 180.02562 * 16 15 14 42 42 H 0.97000 * 119.99649 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7906 -0.3678 2.4657 6 7 2.4306 -1.2720 3.3205 7 6 2.4034 -1.2318 4.7848 8 6 3.0700 -2.1855 2.5727 9 6 2.8482 -1.8638 1.2484 10 6 3.3612 -2.5911 0.0736 11 8 3.0875 -2.2062 -1.0470 12 7 4.1337 -3.6828 0.2412 13 6 4.7136 -4.3011 -0.8627 14 6 4.8354 -3.5964 -2.0628 15 6 5.4139 -4.2139 -3.1611 16 6 5.8563 -5.5184 -3.0328 17 6 5.7054 -6.1739 -1.7984 18 6 6.1520 -7.5068 -1.6520 19 1 6.7105 -7.9795 -2.4465 20 6 5.8704 -8.2146 -0.4771 21 7 5.0770 -7.6966 0.4238 22 14 6.6283 -9.8987 -0.1967 23 1 5.6761 -10.9496 -0.6374 24 1 7.8863 -10.0116 -0.9778 25 1 6.9251 -10.0738 1.2477 26 7 5.1364 -5.5468 -0.7638 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8899 34 1 1.5573 -1.8147 5.1486 35 1 3.3295 -1.6518 5.1770 36 1 2.3031 -0.1988 5.1180 37 1 3.6528 -3.0176 2.9395 38 1 4.2853 -4.0376 1.1312 39 1 4.4816 -2.5785 -2.1344 40 1 5.5171 -3.6869 -4.0983 41 1 6.3116 -6.0265 -3.8699 42 1 4.8816 -8.1870 1.2375 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882470803.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:57 Heat of formation + Delta-G solvation = 56.648758 kcal Electronic energy + Delta-G solvation = -25532.703416 eV Core-core repulsion = 21899.729968 eV Total energy + Delta-G solvation = -3632.973448 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.57328 -41.03899 -39.31683 -36.85101 -35.88445 -35.08726 -33.43431 -32.32182 -31.88958 -30.53977 -28.01863 -27.98564 -27.31628 -24.87896 -23.48801 -23.25499 -22.84507 -21.12906 -20.21548 -19.33096 -18.93646 -17.76218 -17.22312 -16.77952 -16.54218 -16.33876 -16.00973 -15.71232 -15.56357 -15.30786 -15.17600 -14.59662 -14.35295 -14.14618 -14.09261 -13.75227 -13.51908 -13.32293 -12.97315 -12.91301 -12.85429 -12.64880 -12.54938 -12.39408 -12.10902 -11.98166 -11.85710 -11.66659 -11.51261 -10.99538 -10.47095 -10.38401 -9.97771 -9.75135 -9.60132 -8.92129 -8.34070 -6.47138 0.35052 0.85108 1.08341 1.24588 1.41965 1.44560 1.55434 1.59908 2.15235 2.26417 2.39437 2.90993 3.28472 3.61194 3.90414 3.95710 4.05164 4.16399 4.26648 4.34855 4.39938 4.43855 4.55967 4.61370 4.69836 4.70858 4.80084 4.90549 4.94081 4.95067 4.98438 5.01819 5.12352 5.26443 5.30715 5.34486 5.55117 5.65849 5.70989 5.86612 5.97384 6.10598 6.29654 6.48045 6.61127 6.80808 6.97028 7.28279 8.11217 8.46767 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.003541 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.360461 B = 7904.456011 C = 9249.405750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.038 4.038 3 C -0.130 4.130 4 C 0.133 3.867 5 N -0.311 5.311 6 N -0.355 5.355 7 C 0.086 3.914 8 C 0.122 3.878 9 C -0.317 4.317 10 C 0.594 3.406 11 O -0.550 6.550 12 N -0.640 5.640 13 C 0.351 3.649 14 C -0.325 4.325 15 C -0.048 4.048 16 C -0.310 4.310 17 C 0.248 3.752 18 C -0.470 4.470 19 H 0.090 0.910 20 C 0.031 3.969 21 N -0.756 5.756 22 Si 0.987 3.013 23 H -0.265 1.265 24 H -0.258 1.258 25 H -0.266 1.266 26 N -0.534 5.534 27 H 0.078 0.922 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.218 0.782 38 H 0.413 0.587 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.112 0.888 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.131 10.930 11.265 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.058 4.058 3 C -0.187 4.187 4 C -0.034 4.034 5 N -0.133 5.133 6 N -0.131 5.131 7 C -0.053 4.053 8 C -0.032 4.032 9 C -0.332 4.332 10 C 0.385 3.615 11 O -0.429 6.429 12 N -0.284 5.284 13 C 0.115 3.885 14 C -0.349 4.349 15 C -0.072 4.072 16 C -0.332 4.332 17 C 0.122 3.878 18 C -0.501 4.501 19 H 0.108 0.892 20 C -0.191 4.191 21 N -0.378 5.378 22 Si 0.808 3.192 23 H -0.190 1.190 24 H -0.181 1.181 25 H -0.190 1.190 26 N -0.253 5.253 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.139 0.861 36 H 0.119 0.881 37 H 0.234 0.766 38 H 0.249 0.751 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.130 0.870 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.137 11.621 12.486 18.128 hybrid contribution 0.872 -1.215 -0.870 1.730 sum -5.265 10.406 11.616 16.461 Atomic orbital electron populations 1.21710 0.92775 1.01412 1.02949 1.19999 0.96952 0.96402 0.92470 1.21705 1.00417 0.93697 1.02922 1.22524 0.93894 0.92938 0.94077 1.77058 1.20999 1.15364 0.99839 1.48725 1.36352 1.19463 1.08599 1.22453 1.06154 1.06211 0.70465 1.23569 0.94985 0.94729 0.89876 1.20060 1.15851 1.04706 0.92559 1.17624 0.76537 0.78856 0.88503 1.90576 1.58568 1.67753 1.26040 1.42974 1.48196 1.27990 1.09269 1.18799 0.92766 0.89930 0.86984 1.21846 1.15426 1.03040 0.94618 1.21172 0.94149 0.94143 0.97762 1.21890 1.14698 0.97578 0.99054 1.18657 0.88581 0.93722 0.86834 1.19918 1.31428 0.95968 1.02809 0.89151 1.26905 0.94013 1.03543 0.94643 1.70135 1.23986 1.37368 1.06336 0.85125 0.79331 0.76197 0.78589 1.19009 1.18128 1.19043 1.68019 1.19100 1.05445 1.32772 0.90337 0.94073 0.91900 0.88936 0.93775 0.90358 0.91949 0.88709 0.86057 0.88124 0.76558 0.75062 0.84761 0.85210 0.86959 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.18 71.98 0.66 -2.46 16 2 C -0.04 -1.07 3.26 -11.54 -0.04 -1.10 16 3 C -0.13 -3.02 9.18 71.99 0.66 -2.36 16 4 C 0.13 4.00 5.77 43.52 0.25 4.25 16 5 N -0.31 -8.31 12.50 -46.67 -0.58 -8.90 16 6 N -0.35 -7.29 3.98 -367.74 -1.46 -8.75 16 7 C 0.09 0.80 11.44 127.77 1.46 2.26 16 8 C 0.12 2.77 11.00 84.28 0.93 3.70 16 9 C -0.32 -9.95 6.13 -20.16 -0.12 -10.07 16 10 C 0.59 23.42 7.65 86.65 0.66 24.08 16 11 O -0.55 -24.70 11.36 -4.02 -0.05 -24.75 16 12 N -0.64 -26.55 5.39 -311.36 -1.68 -28.23 16 13 C 0.35 17.88 7.51 133.28 1.00 18.88 16 14 C -0.32 -16.30 8.83 22.72 0.20 -16.10 16 15 C -0.05 -2.30 10.15 22.39 0.23 -2.07 16 16 C -0.31 -15.92 9.83 22.87 0.22 -15.70 16 17 C 0.25 14.03 6.52 40.19 0.26 14.29 16 18 C -0.47 -25.42 9.13 23.46 0.21 -25.20 16 19 H 0.09 4.58 7.86 -2.91 -0.02 4.56 16 20 C 0.03 1.54 5.47 85.29 0.47 2.01 16 21 N -0.76 -39.16 11.56 21.84 0.25 -38.90 16 22 Si 0.99 37.11 29.57 68.60 2.03 39.14 16 23 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 25 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 26 N -0.53 -29.75 7.99 -186.40 -1.49 -31.24 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 3.13 5.60 -2.39 -0.01 3.12 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 34 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.22 3.29 7.47 -2.91 -0.02 3.27 16 38 H 0.41 14.79 7.76 -92.71 -0.72 14.07 16 39 H 0.13 6.65 5.33 -3.15 -0.02 6.64 16 40 H 0.13 5.25 8.06 -2.91 -0.02 5.23 16 41 H 0.11 5.28 8.06 -2.91 -0.02 5.26 16 42 H 0.28 12.93 8.29 -92.71 -0.77 12.16 16 Total: -1.00 -74.04 356.42 4.41 -69.62 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: 0.34 Total: 37.61 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 7.06 Total: -5.60 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -4.96 Total: -116.03 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.05 Total: -24.75 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.03 Total: 39.14 kcal Total: -74.04 4.41 -69.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882470803.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.272 kcal (2) G-P(sol) polarization free energy of solvation -74.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds