Wall clock time and date at job start Tue Mar 31 2020 11:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47329 * 2 1 4 4 C 1.53003 * 109.46703 * 239.99981 * 2 1 3 5 5 C 1.50700 * 109.46872 * 120.00220 * 2 1 3 6 6 N 1.30446 * 125.99262 * 358.31785 * 5 2 1 7 7 N 1.39923 * 108.90745 * 180.02562 * 6 5 2 8 8 H 0.96998 * 125.75386 * 179.97438 * 7 6 5 9 9 C 1.34259 * 108.49929 * 0.23886 * 7 6 5 10 10 C 1.38074 * 107.40985 * 359.61892 * 9 7 6 11 11 C 1.47384 * 126.41980 * 180.16995 * 10 9 7 12 12 O 1.21598 * 120.00210 * 185.99464 * 11 10 9 13 13 N 1.34781 * 120.00077 * 5.99529 * 11 10 9 14 14 C 1.39186 * 120.00036 * 183.39211 * 13 11 10 15 15 C 1.39689 * 119.57560 * 339.56679 * 14 13 11 16 16 C 1.38652 * 119.49099 * 179.77199 * 15 14 13 17 17 C 1.38346 * 118.67251 * 0.49310 * 16 15 14 18 18 C 1.40581 * 119.13554 * 359.75323 * 17 16 15 19 19 C 1.41325 * 119.78861 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00433 * 5.45012 * 19 18 17 21 21 C 1.40026 * 120.00420 * 185.44258 * 19 18 17 22 22 N 1.30751 * 119.99438 * 5.46818 * 21 19 18 23 23 Si 1.86798 * 120.00390 * 185.46732 * 21 19 18 24 24 H 1.48495 * 109.46963 * 95.00294 * 23 21 19 25 25 H 1.48500 * 109.46956 * 215.00054 * 23 21 19 26 26 H 1.48499 * 109.47128 * 334.99531 * 23 21 19 27 27 N 1.31914 * 119.57544 * 159.84281 * 14 13 11 28 28 H 1.09004 * 109.47055 * 300.00074 * 1 2 3 29 29 H 1.09002 * 109.47178 * 59.99623 * 1 2 3 30 30 H 1.08992 * 109.47672 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47174 * 185.12699 * 3 2 1 32 32 H 1.08993 * 109.47409 * 305.13141 * 3 2 1 33 33 H 1.09000 * 109.47192 * 65.13079 * 3 2 1 34 34 H 1.08997 * 109.47032 * 306.96378 * 4 2 1 35 35 H 1.08998 * 109.46934 * 66.97446 * 4 2 1 36 36 H 1.09005 * 109.46859 * 186.96813 * 4 2 1 37 37 H 1.08001 * 126.29651 * 179.76061 * 9 7 6 38 38 H 0.96997 * 119.99862 * 3.38304 * 13 11 10 39 39 H 1.08003 * 120.25524 * 359.97438 * 15 14 13 40 40 H 1.08009 * 120.66308 * 180.24474 * 16 15 14 41 41 H 1.08003 * 120.43591 * 179.77066 * 17 16 15 42 42 H 0.96998 * 119.99617 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 7 1.2931 -1.2209 2.1764 7 7 2.1263 -1.7929 3.1441 8 1 1.8318 -2.2396 3.9531 9 6 3.4024 -1.6141 2.7670 10 6 3.3866 -0.9401 1.5620 11 6 4.5621 -0.5320 0.7721 12 8 4.4186 0.1537 -0.2217 13 7 5.7962 -0.9189 1.1514 14 6 6.9117 -0.4757 0.4469 15 6 6.7601 -0.0069 -0.8603 16 6 7.8719 0.4386 -1.5589 17 6 9.1074 0.3949 -0.9380 18 6 9.1954 -0.0928 0.3776 19 6 10.4505 -0.1430 1.0253 20 1 11.3235 0.2731 0.5443 21 6 10.5625 -0.7322 2.2906 22 7 9.5308 -1.3303 2.8267 23 14 12.1856 -0.6638 3.2126 24 1 12.1780 0.4935 4.1430 25 1 12.3694 -1.9187 3.9850 26 1 13.2998 -0.5119 2.2427 27 7 8.0993 -0.5088 1.0201 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1262 1.4438 -0.0918 32 1 1.6037 1.9822 -0.8404 33 1 1.7537 1.9291 0.9324 34 1 1.5784 -1.7066 -1.3137 35 1 1.7820 -0.1405 -2.1348 36 1 3.1228 -0.8305 -1.1892 37 1 4.2799 -1.9398 3.3058 38 1 5.9069 -1.5061 1.9155 39 1 5.7840 0.0114 -1.3221 40 1 7.7758 0.8086 -2.5690 41 1 9.9928 0.7313 -1.4570 42 1 9.6084 -1.7387 3.7031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:45 Heat of formation + Delta-G solvation = 62.110734 kcal Electronic energy + Delta-G solvation = -26076.986225 eV Core-core repulsion = 22444.249626 eV Total energy + Delta-G solvation = -3632.736599 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.64426 -40.99247 -39.32111 -37.70004 -35.84431 -35.03775 -32.28724 -32.13206 -31.89646 -30.47418 -28.03872 -27.97317 -27.37803 -24.88610 -23.74633 -23.44414 -22.78386 -21.06040 -19.76813 -19.24474 -19.16327 -17.95262 -17.52859 -16.61475 -16.47699 -16.20915 -16.02374 -15.79162 -15.52653 -15.26528 -15.02574 -14.60837 -14.55424 -14.05919 -13.87495 -13.71922 -13.02827 -12.95499 -12.90659 -12.82539 -12.63963 -12.59120 -12.35633 -12.20302 -12.03191 -11.87625 -11.80981 -11.43121 -11.36581 -10.92233 -10.53001 -10.24783 -9.91291 -9.85592 -9.57244 -8.90085 -8.28746 -6.44905 0.40344 0.88948 1.10733 1.27567 1.44835 1.56750 1.58957 1.76223 2.21319 2.27019 2.42472 2.92933 3.34796 3.66308 3.96121 4.05781 4.07764 4.16011 4.31525 4.40780 4.48856 4.50090 4.71848 4.85009 4.87338 4.93910 4.98968 5.01425 5.03719 5.06128 5.12258 5.18286 5.27596 5.30177 5.47576 5.59600 5.62297 5.70013 5.84232 6.04132 6.13478 6.24460 6.34911 6.49534 6.65110 6.83902 7.01518 7.37824 8.15637 8.48642 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.003632 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.417572 B = 7707.274233 C = 8850.506749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.015 3.985 3 C -0.151 4.151 4 C -0.144 4.144 5 C 0.140 3.860 6 N -0.311 5.311 7 N -0.444 5.444 8 H 0.462 0.538 9 C 0.133 3.867 10 C -0.312 4.312 11 C 0.589 3.411 12 O -0.524 6.524 13 N -0.640 5.640 14 C 0.350 3.650 15 C -0.324 4.324 16 C -0.050 4.050 17 C -0.311 4.311 18 C 0.248 3.752 19 C -0.471 4.471 20 H 0.087 0.913 21 C 0.031 3.969 22 N -0.753 5.753 23 Si 0.985 3.015 24 H -0.267 1.267 25 H -0.266 1.266 26 H -0.259 1.259 27 N -0.534 5.534 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.222 0.778 38 H 0.412 0.588 39 H 0.149 0.851 40 H 0.129 0.871 41 H 0.109 0.891 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.811 -2.689 3.058 14.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.013 3.987 3 C -0.209 4.209 4 C -0.202 4.202 5 C -0.028 4.028 6 N -0.133 5.133 7 N -0.150 5.150 8 H 0.310 0.690 9 C -0.022 4.022 10 C -0.327 4.327 11 C 0.380 3.620 12 O -0.403 6.403 13 N -0.284 5.284 14 C 0.114 3.886 15 C -0.348 4.348 16 C -0.075 4.075 17 C -0.334 4.334 18 C 0.122 3.878 19 C -0.503 4.503 20 H 0.106 0.894 21 C -0.191 4.191 22 N -0.376 5.376 23 Si 0.806 3.194 24 H -0.192 1.192 25 H -0.191 1.191 26 H -0.182 1.182 27 N -0.253 5.253 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.238 0.762 38 H 0.249 0.751 39 H 0.166 0.834 40 H 0.146 0.854 41 H 0.127 0.873 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.173 -2.866 3.849 15.914 hybrid contribution 1.547 -0.043 0.136 1.554 sum -13.626 -2.909 3.986 14.492 Atomic orbital electron populations 1.21754 0.92386 1.02117 1.02274 1.19024 0.96133 0.94558 0.88952 1.22122 1.04230 0.93485 1.01039 1.22011 1.02962 0.99281 0.95918 1.22557 0.89846 0.94931 0.95481 1.77088 1.17346 1.18176 1.00684 1.46121 1.03517 1.44463 1.20886 0.68979 1.23672 0.90535 0.93811 0.94187 1.20086 0.93281 1.18212 1.01108 1.17552 0.81476 0.78850 0.84149 1.90436 1.84603 1.38618 1.26649 1.42981 1.03806 1.48814 1.32792 1.18827 0.87473 0.93621 0.88648 1.22158 1.01035 1.15834 0.95789 1.21207 0.92113 0.95379 0.98759 1.21889 0.97802 1.15590 0.98082 1.18624 0.91609 0.88373 0.89239 1.19897 0.93869 1.34240 1.02278 0.89449 1.26854 1.01538 0.92801 0.97908 1.70139 1.31510 1.21481 1.14432 0.85158 0.77425 0.78661 0.78205 1.19220 1.19068 1.18219 1.68009 0.96652 1.24694 1.35985 0.92726 0.90909 0.92579 0.90449 0.91204 0.94015 0.93214 0.91280 0.91530 0.76203 0.75139 0.83415 0.85359 0.87331 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 7.96 71.98 0.57 -2.17 16 2 C 0.02 0.41 0.75 -52.93 -0.04 0.37 16 3 C -0.15 -4.20 8.26 71.98 0.59 -3.61 16 4 C -0.14 -3.88 8.19 71.98 0.59 -3.29 16 5 C 0.14 3.87 5.64 43.52 0.25 4.11 16 6 N -0.31 -7.64 11.93 -46.67 -0.56 -8.20 16 7 N -0.44 -7.71 7.29 -56.30 -0.41 -8.12 16 8 H 0.46 4.15 8.96 -213.44 -1.91 2.24 16 9 C 0.13 2.61 11.51 84.28 0.97 3.58 16 10 C -0.31 -8.82 5.94 -20.15 -0.12 -8.94 16 11 C 0.59 20.94 7.25 86.65 0.63 21.57 16 12 O -0.52 -20.53 6.85 -4.02 -0.03 -20.56 16 13 N -0.64 -24.81 5.39 -311.37 -1.68 -26.49 16 14 C 0.35 17.04 7.51 133.28 1.00 18.04 16 15 C -0.32 -15.45 8.90 22.72 0.20 -15.24 16 16 C -0.05 -2.33 10.15 22.39 0.23 -2.10 16 17 C -0.31 -15.73 9.83 22.87 0.22 -15.51 16 18 C 0.25 13.79 6.53 40.19 0.26 14.06 16 19 C -0.47 -25.31 9.13 23.46 0.21 -25.10 16 20 H 0.09 4.43 7.85 -2.91 -0.02 4.41 16 21 C 0.03 1.53 5.48 85.29 0.47 2.00 16 22 N -0.75 -38.22 11.52 21.84 0.25 -37.97 16 23 Si 0.98 37.00 29.56 68.60 2.03 39.03 16 24 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 25 H -0.27 -9.43 7.11 99.48 0.71 -8.72 16 26 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 27 N -0.53 -29.00 7.95 -186.41 -1.48 -30.48 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 2.64 4.63 -2.39 -0.01 2.63 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 2.17 4.63 -2.38 -0.01 2.16 16 37 H 0.22 2.75 7.51 -2.91 -0.02 2.73 16 38 H 0.41 13.93 7.80 -92.71 -0.72 13.21 16 39 H 0.15 6.80 5.14 -11.81 -0.06 6.74 16 40 H 0.13 5.04 8.06 -2.91 -0.02 5.01 16 41 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 42 H 0.28 12.61 8.29 -92.71 -0.77 11.84 16 Total: -1.00 -68.94 342.77 2.57 -66.37 By element: Atomic # 1 Polarization: 40.24 SS G_CDS: -1.60 Total: 38.64 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 6.04 Total: -12.24 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -3.88 Total: -111.25 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.03 Total: -20.56 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Total: -68.94 2.57 -66.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.484 kcal (2) G-P(sol) polarization free energy of solvation -68.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds