Wall clock time and date at job start Tue Mar 31 2020 11:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47526 * 2 1 4 4 C 1.50703 * 109.47232 * 239.99546 * 2 1 3 5 5 H 1.07999 * 119.99984 * 240.00173 * 4 2 1 6 6 C 1.37871 * 120.00005 * 60.00423 * 4 2 1 7 7 N 1.31518 * 119.99797 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00455 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46646 * 60.00012 * 8 6 4 10 10 H 1.48493 * 109.47320 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47268 * 300.00721 * 8 6 4 12 12 C 1.53007 * 109.47031 * 119.99801 * 2 1 3 13 13 N 1.46497 * 109.46865 * 300.00239 * 12 2 1 14 14 C 1.34782 * 119.99726 * 179.97438 * 13 12 2 15 15 O 1.21579 * 120.00222 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99792 * 179.97438 * 14 13 12 17 17 C 1.39596 * 119.99960 * 185.09135 * 16 14 13 18 18 C 1.38388 * 119.79428 * 174.90825 * 17 16 14 19 19 C 1.40558 * 117.39068 * 180.02562 * 18 17 16 20 20 C 1.40312 * 122.10153 * 179.97438 * 19 18 17 21 21 C 1.36173 * 119.47233 * 180.02562 * 20 19 18 22 22 C 1.39420 * 120.92064 * 359.96068 * 21 20 19 23 23 C 1.36088 * 121.17075 * 0.02562 * 22 21 20 24 24 C 1.40541 * 119.65396 * 0.02562 * 23 22 21 25 25 N 1.33482 * 121.70045 * 179.97438 * 24 23 22 26 26 N 1.28444 * 121.61744 * 180.02562 * 25 24 23 27 27 H 1.08992 * 109.47531 * 300.00440 * 1 2 3 28 28 H 1.09003 * 109.46433 * 60.00065 * 1 2 3 29 29 H 1.09002 * 109.47411 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47432 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46771 * 299.99760 * 3 2 1 32 32 H 1.08998 * 109.46897 * 59.99702 * 3 2 1 33 33 H 0.97005 * 119.99697 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47528 * 179.97438 * 12 2 1 35 35 H 1.09002 * 109.46905 * 59.99835 * 12 2 1 36 36 H 0.97000 * 120.00480 * 359.97438 * 13 12 2 37 37 H 0.96998 * 120.00406 * 5.08445 * 16 14 13 38 38 H 1.07995 * 121.30230 * 359.97438 * 18 17 16 39 39 H 1.08001 * 120.26259 * 359.97438 * 20 19 18 40 40 H 1.08004 * 119.53851 * 179.97438 * 21 20 19 41 41 H 1.07997 * 119.41503 * 180.02562 * 22 21 20 42 42 H 1.08007 * 120.16930 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.8280 -2.5200 -4.0080 10 1 1.8270 -0.4201 -5.2203 11 1 3.8076 -1.1194 -4.0076 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8767 -0.4913 3.6696 15 8 2.5749 -1.4804 3.7812 16 7 1.4278 0.1443 4.7700 17 6 1.8499 -0.2678 6.0351 18 6 1.4713 0.4521 7.1547 19 6 1.9252 -0.0074 8.4031 20 6 1.6012 0.6468 9.6013 21 6 2.0706 0.1551 10.7812 22 6 2.8672 -0.9886 10.8145 23 6 3.2006 -1.6483 9.6719 24 6 2.7369 -1.1722 8.4335 25 7 3.0393 -1.7868 7.2879 26 7 2.6151 -1.3500 6.1570 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.7091 1.1613 -3.4845 34 1 3.1300 -0.7217 1.2492 35 1 1.6766 -1.7489 1.2493 36 1 0.9942 0.7583 2.3564 37 1 0.8115 0.8883 4.6829 38 1 0.8519 1.3330 7.0724 39 1 0.9851 1.5338 9.5878 40 1 1.8223 0.6581 11.7041 41 1 3.2259 -1.3577 11.7639 42 1 3.8190 -2.5327 9.7164 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888618959.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:04 Heat of formation + Delta-G solvation = 62.878552 kcal Electronic energy + Delta-G solvation = -24934.939555 eV Core-core repulsion = 21302.236251 eV Total energy + Delta-G solvation = -3632.703304 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.56965 -39.86515 -37.99506 -36.57246 -35.18865 -33.41349 -33.07739 -31.53058 -30.89126 -29.60661 -25.77278 -25.74896 -25.59901 -25.06987 -23.82834 -22.71013 -21.00507 -19.38308 -18.94938 -18.41232 -17.77893 -16.80738 -16.23284 -15.82896 -15.76624 -14.95323 -14.80027 -14.77296 -14.56330 -14.33845 -13.84547 -13.58480 -13.16344 -12.90126 -12.54522 -12.50060 -12.32207 -12.20663 -11.60676 -11.32545 -11.27790 -11.19209 -10.85014 -10.72958 -10.41271 -10.21955 -10.18090 -9.99358 -9.65206 -9.47245 -9.32748 -9.21839 -8.81726 -8.51180 -8.36761 -8.13590 -6.02869 -4.12717 -0.21569 0.51571 1.53548 2.48278 2.57252 3.30969 3.34889 3.39172 3.46784 3.82545 3.88618 4.09234 4.23788 4.32558 4.41542 4.48593 4.65942 4.72004 4.82626 5.19028 5.23027 5.24108 5.40103 5.57659 5.83881 5.91496 6.00040 6.13151 6.30141 6.33270 6.44776 6.47200 6.72078 6.79195 6.81950 6.98916 7.00702 7.05069 7.34495 7.53644 7.68897 7.99261 8.08082 8.19791 8.37744 8.63224 8.84885 8.89927 9.53100 10.98594 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.042237 B = 0.002309 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.760453 B =12125.303197 C =12587.097782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.149 3.851 13 N -0.725 5.725 14 C 0.684 3.316 15 O -0.533 6.533 16 N -0.667 5.667 17 C 0.313 3.687 18 C -0.155 4.155 19 C -0.032 4.032 20 C -0.114 4.114 21 C -0.088 4.088 22 C -0.119 4.119 23 C -0.061 4.061 24 C 0.026 3.974 25 N -0.172 5.172 26 N -0.195 5.195 27 H 0.005 0.995 28 H 0.086 0.914 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.005 0.995 33 H 0.260 0.740 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.394 0.606 37 H 0.413 0.587 38 H 0.153 0.847 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.908 4.111 25.243 25.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.027 3.973 13 N -0.380 5.380 14 C 0.383 3.617 15 O -0.404 6.404 16 N -0.316 5.316 17 C 0.085 3.915 18 C -0.190 4.190 19 C -0.041 4.041 20 C -0.133 4.133 21 C -0.108 4.108 22 C -0.140 4.140 23 C -0.082 4.082 24 C -0.105 4.105 25 N -0.027 5.027 26 N -0.054 5.054 27 H 0.024 0.976 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.229 0.771 37 H 0.250 0.750 38 H 0.171 0.829 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.601 2.128 24.178 24.279 hybrid contribution -1.085 1.594 -0.263 1.946 sum -1.686 3.722 23.915 24.261 Atomic orbital electron populations 1.21830 0.97744 0.99240 0.99998 1.18374 0.92823 0.92796 0.90469 1.21830 0.98668 0.98320 0.99998 1.20935 1.31529 1.12138 0.89783 0.92370 1.24877 0.94856 0.94932 0.98870 1.69794 1.36681 1.22732 1.23336 0.86614 0.79269 0.79794 0.82076 1.20251 1.21365 1.20247 1.21693 0.98169 0.95567 0.81914 1.45566 1.55361 1.32909 1.04208 1.16189 0.81538 0.83554 0.80439 1.91060 1.39798 1.24951 1.84613 1.42825 1.49214 1.36803 1.02721 1.19691 0.93704 0.92529 0.85533 1.21739 1.04455 1.02261 0.90521 1.18563 0.96253 0.94997 0.94277 1.20897 1.01114 1.00363 0.90971 1.21062 0.95874 0.95656 0.98211 1.20953 0.98650 0.95791 0.98588 1.20799 0.98071 0.99700 0.89610 1.20430 0.99405 0.95008 0.95639 1.73974 1.13122 1.22067 0.93578 1.73746 1.07233 1.08673 1.15731 0.97621 0.89580 0.95359 0.95369 0.89575 0.97618 0.92960 0.92560 0.92554 0.77077 0.74996 0.82888 0.84696 0.85113 0.84906 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 4 C -0.51 -13.16 8.01 -34.44 -0.28 -13.43 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.42 9.35 55.43 0.52 -22.90 16 8 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.15 3.16 4.50 -4.04 -0.02 3.14 16 13 N -0.73 -12.70 4.96 -65.22 -0.32 -13.02 16 14 C 0.68 12.34 8.52 -86.91 -0.74 11.59 16 15 O -0.53 -12.01 14.61 5.30 0.08 -11.93 16 16 N -0.67 -9.01 5.40 -15.76 -0.09 -9.09 16 17 C 0.31 4.50 7.49 -154.12 -1.15 3.35 16 18 C -0.15 -1.61 9.84 -38.65 -0.38 -1.99 16 19 C -0.03 -0.34 5.75 -106.80 -0.61 -0.95 16 20 C -0.11 -0.83 9.81 -39.54 -0.39 -1.22 16 21 C -0.09 -0.53 9.96 -39.88 -0.40 -0.93 16 22 C -0.12 -0.78 9.94 -39.91 -0.40 -1.18 16 23 C -0.06 -0.56 10.00 -39.49 -0.39 -0.96 16 24 C 0.03 0.33 6.69 -84.84 -0.57 -0.24 16 25 N -0.17 -2.79 11.54 32.23 0.37 -2.41 16 26 N -0.19 -3.50 9.02 31.23 0.28 -3.22 16 27 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 28 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 32 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 33 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.39 5.95 6.18 -40.82 -0.25 5.70 16 37 H 0.41 3.74 8.72 -40.82 -0.36 3.38 16 38 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 41 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.14 1.11 8.06 -52.48 -0.42 0.68 16 LS Contribution 347.74 15.07 5.24 5.24 Total: -1.00 -32.76 347.74 -9.13 -41.90 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.30 Total: 4.86 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -4.90 Total: -5.14 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.76 Total: -50.64 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.08 Total: -11.93 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.76 -9.13 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888618959.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.776 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds