Wall clock time and date at job start Tue Mar 31 2020 11:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47526 * 2 1 4 4 C 1.50703 * 109.47232 * 239.99546 * 2 1 3 5 5 H 1.07999 * 119.99984 * 240.00173 * 4 2 1 6 6 C 1.37871 * 120.00005 * 60.00423 * 4 2 1 7 7 N 1.31518 * 119.99797 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00455 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46646 * 60.00012 * 8 6 4 10 10 H 1.48493 * 109.47320 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47268 * 300.00721 * 8 6 4 12 12 C 1.53007 * 109.47031 * 119.99801 * 2 1 3 13 13 N 1.46497 * 109.46865 * 300.00239 * 12 2 1 14 14 C 1.34782 * 119.99726 * 179.97438 * 13 12 2 15 15 O 1.21579 * 120.00222 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99792 * 179.97438 * 14 13 12 17 17 C 1.39596 * 119.99960 * 185.09135 * 16 14 13 18 18 C 1.38388 * 119.79428 * 174.90825 * 17 16 14 19 19 C 1.40558 * 117.39068 * 180.02562 * 18 17 16 20 20 C 1.40312 * 122.10153 * 179.97438 * 19 18 17 21 21 C 1.36173 * 119.47233 * 180.02562 * 20 19 18 22 22 C 1.39420 * 120.92064 * 359.96068 * 21 20 19 23 23 C 1.36088 * 121.17075 * 0.02562 * 22 21 20 24 24 C 1.40541 * 119.65396 * 0.02562 * 23 22 21 25 25 N 1.33482 * 121.70045 * 179.97438 * 24 23 22 26 26 N 1.28444 * 121.61744 * 180.02562 * 25 24 23 27 27 H 1.08992 * 109.47531 * 300.00440 * 1 2 3 28 28 H 1.09003 * 109.46433 * 60.00065 * 1 2 3 29 29 H 1.09002 * 109.47411 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47432 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46771 * 299.99760 * 3 2 1 32 32 H 1.08998 * 109.46897 * 59.99702 * 3 2 1 33 33 H 0.97005 * 119.99697 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47528 * 179.97438 * 12 2 1 35 35 H 1.09002 * 109.46905 * 59.99835 * 12 2 1 36 36 H 0.97000 * 120.00480 * 359.97438 * 13 12 2 37 37 H 0.96998 * 120.00406 * 5.08445 * 16 14 13 38 38 H 1.07995 * 121.30230 * 359.97438 * 18 17 16 39 39 H 1.08001 * 120.26259 * 359.97438 * 20 19 18 40 40 H 1.08004 * 119.53851 * 179.97438 * 21 20 19 41 41 H 1.07997 * 119.41503 * 180.02562 * 22 21 20 42 42 H 1.08007 * 120.16930 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.8280 -2.5200 -4.0080 10 1 1.8270 -0.4201 -5.2203 11 1 3.8076 -1.1194 -4.0076 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8767 -0.4913 3.6696 15 8 2.5749 -1.4804 3.7812 16 7 1.4278 0.1443 4.7700 17 6 1.8499 -0.2678 6.0351 18 6 1.4713 0.4521 7.1547 19 6 1.9252 -0.0074 8.4031 20 6 1.6012 0.6468 9.6013 21 6 2.0706 0.1551 10.7812 22 6 2.8672 -0.9886 10.8145 23 6 3.2006 -1.6483 9.6719 24 6 2.7369 -1.1722 8.4335 25 7 3.0393 -1.7868 7.2879 26 7 2.6151 -1.3500 6.1570 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.7091 1.1613 -3.4845 34 1 3.1300 -0.7217 1.2492 35 1 1.6766 -1.7489 1.2493 36 1 0.9942 0.7583 2.3564 37 1 0.8115 0.8883 4.6829 38 1 0.8519 1.3330 7.0724 39 1 0.9851 1.5338 9.5878 40 1 1.8223 0.6581 11.7041 41 1 3.2259 -1.3577 11.7639 42 1 3.8190 -2.5327 9.7164 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888618959.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:03 Heat of formation + Delta-G solvation = 41.259347 kcal Electronic energy + Delta-G solvation = -24935.877034 eV Core-core repulsion = 21302.236251 eV Total energy + Delta-G solvation = -3633.640783 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.48243 -41.13635 -38.90745 -38.15045 -36.38655 -35.05971 -33.99776 -32.77463 -32.17069 -30.52717 -27.55099 -27.48443 -26.84320 -26.44689 -24.84467 -23.47305 -22.23876 -20.66483 -20.32960 -19.65230 -18.80226 -17.84818 -17.61138 -16.97135 -16.96747 -16.58611 -16.02234 -15.97924 -15.55856 -15.35082 -15.01283 -14.74700 -14.70896 -14.41291 -14.00307 -13.49675 -13.26857 -13.18205 -13.08811 -12.88244 -12.70964 -12.62168 -12.47866 -12.22934 -12.15421 -12.07489 -11.48023 -11.32573 -11.16809 -11.00307 -10.71367 -10.49992 -10.39353 -10.15526 -9.87506 -9.01928 -8.02130 -6.17197 -0.97272 -0.28698 0.82710 1.32571 1.44415 1.45672 1.52664 1.72930 2.25406 2.45691 2.84999 2.96924 3.21538 3.25884 3.40763 3.58393 3.78072 3.86562 4.21427 4.23260 4.39031 4.49995 4.52186 4.57615 4.71892 4.73748 4.98390 5.02719 5.06606 5.09809 5.12630 5.20853 5.32618 5.35097 5.39056 5.44805 5.57352 5.67913 5.68359 5.78638 5.88075 6.16663 6.22082 6.44247 6.86132 6.91737 7.45654 7.50063 7.74916 8.96612 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.042237 B = 0.002309 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.760453 B =12125.303197 C =12587.097782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.052 3.948 3 C -0.120 4.120 4 C -0.529 4.529 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.167 3.833 13 N -0.715 5.715 14 C 0.686 3.314 15 O -0.585 6.585 16 N -0.648 5.648 17 C 0.276 3.724 18 C -0.120 4.120 19 C -0.051 4.051 20 C -0.109 4.109 21 C -0.082 4.082 22 C -0.091 4.091 23 C -0.098 4.098 24 C 0.014 3.986 25 N -0.224 5.224 26 N -0.258 5.258 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.017 0.983 30 H 0.016 0.984 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.261 0.739 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.409 0.591 37 H 0.436 0.564 38 H 0.202 0.798 39 H 0.172 0.828 40 H 0.173 0.827 41 H 0.168 0.832 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.407 6.668 28.864 29.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.052 3.948 3 C -0.178 4.178 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.204 1.204 12 C 0.043 3.957 13 N -0.371 5.371 14 C 0.385 3.615 15 O -0.460 6.460 16 N -0.300 5.300 17 C 0.047 3.953 18 C -0.154 4.154 19 C -0.060 4.060 20 C -0.128 4.128 21 C -0.101 4.101 22 C -0.111 4.111 23 C -0.119 4.119 24 C -0.118 4.118 25 N -0.077 5.077 26 N -0.114 5.114 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.246 0.754 37 H 0.277 0.723 38 H 0.219 0.781 39 H 0.190 0.810 40 H 0.191 0.809 41 H 0.185 0.815 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.121 4.712 27.834 28.309 hybrid contribution -0.629 0.856 -1.039 1.486 sum -2.750 5.567 26.795 27.505 Atomic orbital electron populations 1.21668 0.96875 0.98700 1.00562 1.18368 0.93438 0.93111 0.89930 1.21669 0.97881 0.97705 1.00552 1.21226 1.31769 1.12186 0.91579 0.93882 1.25425 0.95181 0.95632 1.00862 1.69891 1.36909 1.23153 1.23664 0.85837 0.78594 0.78817 0.79672 1.20377 1.20681 1.20384 1.21193 0.96820 0.94783 0.82889 1.45176 1.55573 1.33113 1.03259 1.16281 0.80906 0.83065 0.81202 1.91032 1.42073 1.27371 1.85496 1.42332 1.49346 1.36954 1.01390 1.19886 0.95464 0.93409 0.86502 1.22243 1.02244 1.01988 0.88905 1.18969 0.96329 0.94812 0.95913 1.21336 1.00820 1.00933 0.89661 1.21619 0.94135 0.94853 0.99537 1.21462 0.96171 0.94759 0.98752 1.20984 1.00156 1.01197 0.89572 1.20945 0.99525 0.95777 0.95561 1.73813 1.15441 1.24042 0.94416 1.73472 1.09539 1.11166 1.17270 0.94131 0.91782 0.96420 0.96468 0.91766 0.94158 0.92988 0.94568 0.94499 0.75351 0.72347 0.78061 0.81012 0.80909 0.81465 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 2 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 3 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 4 C -0.53 -28.28 8.01 25.60 0.21 -28.07 16 5 H 0.04 2.37 7.74 -2.91 -0.02 2.34 16 6 C 0.03 1.53 5.15 84.65 0.44 1.97 16 7 N -0.90 -47.69 9.35 21.45 0.20 -47.49 16 8 Si 0.94 43.08 29.54 68.60 2.03 45.11 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 C 0.17 7.32 4.50 86.38 0.39 7.71 16 13 N -0.71 -24.94 4.96 -478.53 -2.37 -27.32 16 14 C 0.69 25.31 8.52 179.05 1.53 26.84 16 15 O -0.58 -27.97 14.61 -3.97 -0.06 -28.03 16 16 N -0.65 -17.13 5.40 -322.04 -1.74 -18.87 16 17 C 0.28 7.95 7.49 132.47 0.99 8.94 16 18 C -0.12 -2.19 9.84 22.87 0.23 -1.96 16 19 C -0.05 -0.96 5.75 -21.28 -0.12 -1.08 16 20 C -0.11 -1.02 9.81 22.29 0.22 -0.80 16 21 C -0.08 -0.53 9.96 22.07 0.22 -0.31 16 22 C -0.09 -0.84 9.94 22.05 0.22 -0.62 16 23 C -0.10 -1.74 10.00 22.33 0.22 -1.52 16 24 C 0.01 0.37 6.69 40.39 0.27 0.64 16 25 N -0.22 -7.82 11.54 -51.95 -0.60 -8.42 16 26 N -0.26 -9.88 9.02 -55.11 -0.50 -10.38 16 27 H 0.04 1.45 6.86 -2.39 -0.02 1.43 16 28 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 32 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 33 H 0.26 13.36 8.31 -92.70 -0.77 12.59 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.41 11.60 6.18 -92.71 -0.57 11.02 16 37 H 0.44 6.85 8.72 -92.71 -0.81 6.04 16 38 H 0.20 1.47 8.06 -2.91 -0.02 1.45 16 39 H 0.17 0.37 8.06 -2.91 -0.02 0.34 16 40 H 0.17 -0.22 8.06 -2.91 -0.02 -0.24 16 41 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16 42 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -78.77 347.74 2.59 -76.18 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -0.31 Total: 14.49 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 5.94 Total: 4.72 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -5.01 Total: -112.48 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.06 Total: -28.03 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -78.77 2.59 -76.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888618959.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.440 kcal (2) G-P(sol) polarization free energy of solvation -78.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds