Wall clock time and date at job start Tue Mar 31 2020 10:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30830 * 125.95682 * 2 1 4 4 C 1.33248 * 109.82701 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.52671 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.47346 * 90.00047 * 5 4 3 7 7 C 1.34772 * 119.99795 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00205 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99771 * 179.97438 * 7 6 5 10 10 C 1.53003 * 109.47247 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.46590 * 53.81678 * 10 9 7 12 12 C 1.50697 * 109.47149 * 293.81521 * 10 9 7 13 13 H 1.08007 * 119.99894 * 324.79503 * 12 10 9 14 14 C 1.37872 * 119.99807 * 144.79019 * 12 10 9 15 15 N 1.31517 * 120.00071 * 181.06635 * 14 12 10 16 16 Si 1.86798 * 120.00163 * 1.34603 * 14 12 10 17 17 H 1.48502 * 109.47403 * 266.73964 * 16 14 12 18 18 H 1.48497 * 109.47302 * 26.74159 * 16 14 12 19 19 H 1.48505 * 109.47101 * 146.74251 * 16 14 12 20 20 C 1.50705 * 109.47053 * 173.81666 * 10 9 7 21 21 C 1.38227 * 120.00239 * 66.66820 * 20 10 9 22 22 C 1.38232 * 120.00284 * 179.78845 * 21 20 10 23 23 C 1.38240 * 119.99903 * 0.44082 * 22 21 20 24 24 C 1.38236 * 119.99460 * 359.81041 * 23 22 21 25 25 C 1.38227 * 120.00456 * 359.97438 * 24 23 22 26 26 N 1.30717 * 108.94354 * 0.25932 * 4 3 2 27 27 N 1.34429 * 125.96330 * 180.02562 * 2 1 3 28 28 H 0.96998 * 126.81949 * 359.97438 * 27 2 1 29 29 H 1.09002 * 109.47114 * 89.97865 * 1 2 3 30 30 H 1.08998 * 109.46779 * 209.98082 * 1 2 3 31 31 H 1.09001 * 109.47272 * 329.97957 * 1 2 3 32 32 H 1.08999 * 109.47144 * 329.99511 * 5 4 3 33 33 H 1.09008 * 109.46633 * 209.99824 * 5 4 3 34 34 H 0.96999 * 119.99642 * 359.97438 * 6 5 4 35 35 H 1.08999 * 109.47252 * 59.99689 * 9 7 6 36 36 H 1.08998 * 109.47336 * 299.99659 * 9 7 6 37 37 H 0.96996 * 120.00150 * 180.27494 * 15 14 12 38 38 H 1.08001 * 120.00112 * 359.97438 * 21 20 10 39 39 H 1.07993 * 120.00455 * 180.27318 * 22 21 20 40 40 H 1.07992 * 120.00546 * 179.83506 * 23 22 21 41 41 H 1.08003 * 119.99975 * 179.97438 * 24 23 22 42 42 H 1.08006 * 120.00335 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 -0.0006 5 6 4.7372 1.6237 -0.0002 6 7 5.1206 1.9258 1.3811 7 6 6.1596 2.7480 1.6276 8 8 6.7775 3.2376 0.7059 9 6 6.5536 3.0591 3.0485 10 6 7.7537 4.0082 3.0489 11 1 7.5241 4.8844 2.4425 12 6 8.9540 3.3005 2.4750 13 1 9.0985 2.2462 2.6595 14 6 9.8675 3.9989 1.7143 15 7 10.9039 3.3769 1.1959 16 14 9.6374 5.8302 1.4264 17 1 8.8960 6.0425 0.1573 18 1 8.8676 6.4156 2.5532 19 1 10.9658 6.4884 1.3396 20 6 8.0527 4.4394 4.4616 21 6 8.5066 3.5160 5.3847 22 6 8.7850 3.9123 6.6794 23 6 8.6009 5.2304 7.0534 24 6 8.1421 6.1527 6.1316 25 6 7.8679 5.7573 4.8358 26 7 3.6195 -0.6167 -0.0065 27 7 2.2965 -1.0881 -0.0005 28 1 2.0094 -2.0146 -0.0006 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5141 32 1 4.4700 2.5475 -0.5134 33 1 5.5742 1.1514 -0.5146 34 1 4.6262 1.5345 2.1182 35 1 6.8211 2.1356 3.5619 36 1 5.7164 3.5313 3.5626 37 1 11.5487 3.8690 0.6641 38 1 8.6465 2.4854 5.0936 39 1 9.1438 3.1918 7.3994 40 1 8.8159 5.5396 8.0656 41 1 7.9979 7.1824 6.4239 42 1 7.5098 6.4780 4.1155 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889701391.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:35 Heat of formation + Delta-G solvation = 70.926206 kcal Electronic energy + Delta-G solvation = -25002.431729 eV Core-core repulsion = 21370.077397 eV Total energy + Delta-G solvation = -3632.354332 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.42128 -39.16005 -38.31104 -35.01911 -33.95368 -32.81376 -32.59928 -31.60272 -30.17066 -29.37614 -28.52515 -27.12442 -25.34983 -22.59110 -21.85742 -21.70481 -20.73484 -20.22331 -19.14306 -18.17121 -16.88012 -16.57723 -16.20164 -15.90911 -15.26046 -14.97594 -14.55233 -14.44573 -14.07282 -13.75316 -13.63597 -13.32891 -13.10111 -12.94377 -12.69179 -12.62815 -12.43626 -12.26473 -12.11060 -11.81657 -11.63110 -10.98544 -10.70329 -10.50213 -10.44894 -10.30712 -10.28531 -9.85846 -9.80515 -9.55434 -9.11298 -8.90510 -8.62124 -8.36706 -8.16078 -7.77343 -5.92127 -3.89704 1.26794 2.13703 2.18272 2.31831 2.48460 3.48828 3.49989 3.53564 3.56525 3.60439 3.91914 4.30673 4.48209 4.56843 4.64092 4.93414 5.00331 5.32171 5.35435 5.55201 5.56067 5.60005 5.70382 5.72778 5.86673 5.98017 5.99181 6.07051 6.13572 6.14972 6.29089 6.37452 6.65934 6.73205 6.73490 6.80603 6.87709 7.06975 7.18160 7.31353 7.62638 7.77612 7.82705 7.87908 8.02603 8.58899 9.01165 9.07069 9.72750 11.20883 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.014795 B = 0.003292 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.106076 B = 8504.528767 C = 9551.522390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.279 3.721 3 N -0.528 5.528 4 C 0.221 3.779 5 C 0.217 3.783 6 N -0.741 5.741 7 C 0.518 3.482 8 O -0.498 6.498 9 C -0.115 4.115 10 C 0.056 3.944 11 H 0.051 0.949 12 C -0.489 4.489 13 H 0.071 0.929 14 C 0.086 3.914 15 N -0.900 5.900 16 Si 0.870 3.130 17 H -0.276 1.276 18 H -0.255 1.255 19 H -0.295 1.295 20 C -0.039 4.039 21 C -0.100 4.100 22 C -0.129 4.129 23 C -0.150 4.150 24 C -0.128 4.128 25 C -0.135 4.135 26 N -0.295 5.295 27 N -0.483 5.483 28 H 0.440 0.560 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.395 0.605 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.261 0.739 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.790 -6.320 3.185 21.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.000 4.000 3 N -0.258 5.258 4 C -0.062 4.062 5 C 0.091 3.909 6 N -0.398 5.398 7 C 0.305 3.695 8 O -0.370 6.370 9 C -0.155 4.155 10 C 0.037 3.963 11 H 0.069 0.931 12 C -0.526 4.526 13 H 0.089 0.911 14 C -0.116 4.116 15 N -0.537 5.537 16 Si 0.698 3.302 17 H -0.202 1.202 18 H -0.179 1.179 19 H -0.222 1.222 20 C -0.040 4.040 21 C -0.118 4.118 22 C -0.147 4.147 23 C -0.168 4.168 24 C -0.146 4.146 25 C -0.153 4.153 26 N -0.125 5.125 27 N -0.202 5.202 28 H 0.286 0.714 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.228 0.772 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -19.536 -5.919 2.347 20.547 hybrid contribution -0.488 -0.029 0.064 0.493 sum -20.023 -5.949 2.411 21.027 Atomic orbital electron populations 1.20400 0.83535 1.05079 1.04603 1.24466 0.96709 0.82841 0.95959 1.70422 1.01337 1.29414 1.24609 1.24335 0.93349 0.90089 0.98412 1.19312 0.89915 0.95570 0.86121 1.46035 1.35232 1.51906 1.06581 1.20819 0.78199 0.77732 0.92722 1.90755 1.50249 1.49875 1.46083 1.21659 0.99620 1.02134 0.92103 1.18137 0.93760 0.95579 0.88831 0.93112 1.20603 1.04928 0.96634 1.30403 0.91105 1.24879 0.94616 0.97901 0.94241 1.69889 1.13008 1.36289 1.34546 0.86961 0.77129 0.86519 0.79628 1.20155 1.17950 1.22211 1.20765 0.93895 0.92607 0.96736 1.20985 0.98439 1.00193 0.92217 1.21053 1.01195 0.95804 0.96622 1.20858 1.03199 0.93923 0.98792 1.20961 1.01045 0.98586 0.93999 1.21156 1.02088 0.96427 0.95614 1.78134 0.96416 1.12467 1.25477 1.48057 1.04381 1.10110 1.57635 0.71434 0.88955 0.89861 0.88219 0.88954 0.89124 0.77234 0.89708 0.91235 0.92915 0.86177 0.87235 0.87485 0.87424 0.87009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.51 36.01 0.38 0.08 16 2 C 0.28 2.51 8.24 -155.69 -1.28 1.23 16 3 N -0.53 -6.76 11.19 -8.16 -0.09 -6.85 16 4 C 0.22 3.08 7.51 -156.84 -1.18 1.91 16 5 C 0.22 3.33 6.30 -5.19 -0.03 3.30 16 6 N -0.74 -11.79 5.55 -61.47 -0.34 -12.13 16 7 C 0.52 10.37 7.58 -10.99 -0.08 10.29 16 8 O -0.50 -12.37 15.02 5.56 0.08 -12.29 16 9 C -0.11 -2.17 4.97 -27.88 -0.14 -2.31 16 10 C 0.06 1.30 1.17 -92.92 -0.11 1.19 16 11 H 0.05 1.24 4.93 -51.93 -0.26 0.99 16 12 C -0.49 -13.53 6.87 -34.44 -0.24 -13.77 16 13 H 0.07 2.12 8.06 -52.48 -0.42 1.70 16 14 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 15 N -0.90 -28.45 13.96 55.43 0.77 -27.67 16 16 Si 0.87 22.84 27.01 -169.99 -4.59 18.25 16 17 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 18 H -0.26 -6.17 4.71 56.52 0.27 -5.90 16 19 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 20 C -0.04 -0.83 4.65 -104.62 -0.49 -1.32 16 21 C -0.10 -1.98 8.93 -39.59 -0.35 -2.33 16 22 C -0.13 -2.23 10.05 -39.58 -0.40 -2.62 16 23 C -0.15 -2.46 10.05 -39.58 -0.40 -2.86 16 24 C -0.13 -2.21 10.05 -39.59 -0.40 -2.61 16 25 C -0.13 -2.66 8.71 -39.58 -0.34 -3.01 16 26 N -0.30 -3.93 12.80 32.42 0.41 -3.52 16 27 N -0.48 -4.31 7.45 32.62 0.24 -4.07 16 28 H 0.44 2.18 8.96 -182.34 -1.63 0.54 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.09 1.48 8.14 -51.92 -0.42 1.06 16 34 H 0.39 5.34 8.46 -40.82 -0.35 4.99 16 35 H 0.08 1.51 8.05 -51.93 -0.42 1.09 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 38 H 0.12 2.36 7.87 -52.49 -0.41 1.95 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 42 H 0.11 2.16 7.12 -52.48 -0.37 1.78 16 LS Contribution 357.73 15.07 5.39 5.39 Total: -1.00 -37.20 357.73 -10.21 -47.41 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.94 Total: 5.87 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -5.16 Total: -10.39 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 1.00 Total: -54.24 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.08 Total: -12.29 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.59 Total: 18.25 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.20 -10.21 -47.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889701391.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.338 kcal (2) G-P(sol) polarization free energy of solvation -37.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds