Wall clock time and date at job start Tue Mar 31 2020 10:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.46995 * 2 1 4 4 C 1.50696 * 109.47369 * 120.00022 * 2 1 3 5 5 C 1.35343 * 126.37785 * 325.35079 * 4 2 1 6 6 C 1.41564 * 105.50451 * 180.11653 * 5 4 2 7 7 C 1.47568 * 126.52496 * 179.84064 * 6 5 4 8 8 O 1.21587 * 120.00161 * 354.82458 * 7 6 5 9 9 N 1.34776 * 119.99812 * 174.82071 * 7 6 5 10 10 C 1.37038 * 120.00206 * 185.42144 * 9 7 6 11 11 H 1.08002 * 119.99347 * 5.36220 * 10 9 7 12 12 C 1.38950 * 120.00219 * 185.35840 * 10 9 7 13 13 N 1.31396 * 119.99923 * 5.45968 * 12 10 9 14 14 Si 1.86797 * 120.00007 * 185.45599 * 12 10 9 15 15 H 1.48493 * 109.47461 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46843 * 120.00476 * 14 12 10 17 17 H 1.48498 * 109.47172 * 239.99991 * 14 12 10 18 18 C 1.39344 * 119.99841 * 5.42457 * 9 7 6 19 19 C 1.39085 * 119.70032 * 84.88139 * 18 9 7 20 20 C 1.38374 * 119.09675 * 179.72269 * 19 18 9 21 21 C 1.38828 * 118.49603 * 0.53656 * 20 19 18 22 22 C 1.38150 * 119.31484 * 359.48370 * 21 20 19 23 23 N 1.31884 * 120.85088 * 0.25332 * 22 21 20 24 24 N 1.31874 * 106.94609 * 359.58516 * 6 5 4 25 25 N 1.28469 * 110.05987 * 0.25729 * 24 6 5 26 26 C 1.46502 * 124.87763 * 180.02562 * 25 24 6 27 27 H 1.09003 * 109.47526 * 299.99868 * 1 2 3 28 28 H 1.08994 * 109.47323 * 59.99996 * 1 2 3 29 29 H 1.09004 * 109.47232 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47526 * 240.00132 * 2 1 3 31 31 H 1.08998 * 109.46874 * 60.00231 * 3 2 1 32 32 H 1.09007 * 109.46892 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47088 * 300.00148 * 3 2 1 34 34 H 1.08000 * 127.24778 * 359.97438 * 5 4 2 35 35 H 0.97003 * 119.99708 * 179.97438 * 13 12 10 36 36 H 1.08000 * 120.45556 * 359.97438 * 19 18 9 37 37 H 1.08001 * 120.75285 * 180.29106 * 20 19 18 38 38 H 1.08001 * 120.34834 * 179.75303 * 21 20 19 39 39 H 1.08000 * 119.57468 * 180.22824 * 22 21 20 40 40 H 1.08990 * 109.47064 * 90.02665 * 26 25 24 41 41 H 1.08997 * 109.47235 * 210.02922 * 26 25 24 42 42 H 1.08999 * 109.46749 * 330.02498 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.4548 -0.7017 2.4544 6 6 2.2884 -1.5022 3.2719 7 6 2.0885 -1.8022 4.7028 8 8 1.1834 -1.2691 5.3152 9 7 2.9092 -2.6673 5.3310 10 6 2.6581 -3.0313 6.6281 11 1 1.7569 -2.6941 7.1186 12 6 3.5627 -3.8342 7.3120 13 7 4.7080 -4.1559 6.7541 14 14 3.1507 -4.4560 9.0245 15 1 1.8105 -3.9563 9.4235 16 1 3.1448 -5.9410 9.0237 17 1 4.1692 -3.9656 9.9875 18 6 4.0132 -3.1914 4.6616 19 6 5.2048 -2.4746 4.6309 20 6 6.2949 -3.0096 3.9674 21 6 6.1522 -4.2425 3.3455 22 6 4.9387 -4.8991 3.4158 23 7 3.9183 -4.3672 4.0601 24 7 3.2746 -1.9332 2.5098 25 7 3.1391 -1.4797 1.3155 26 6 4.0535 -1.7575 0.2051 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 0.5498 -0.1897 2.7466 35 1 5.3397 -4.7161 7.2317 36 1 5.2794 -1.5155 5.1216 37 1 7.2344 -2.4781 3.9308 38 1 6.9824 -4.6859 2.8159 39 1 4.8241 -5.8602 2.9367 40 1 3.7241 -2.6531 -0.3215 41 1 4.0571 -0.9121 -0.4829 42 1 5.0598 -1.9139 0.5937 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892469532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:07 Heat of formation + Delta-G solvation = 99.107430 kcal Electronic energy + Delta-G solvation = -27017.393217 eV Core-core repulsion = 23386.260914 eV Total energy + Delta-G solvation = -3631.132302 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.17737 -39.41241 -37.65565 -35.69167 -34.65901 -33.03013 -31.78055 -31.16977 -29.22258 -28.96282 -27.28033 -27.24686 -25.12236 -22.90781 -22.47032 -22.33410 -21.64038 -19.74617 -18.68706 -18.01948 -16.71948 -15.97218 -15.86202 -15.45458 -15.11229 -14.76019 -14.54288 -14.10218 -13.92772 -13.61353 -13.53019 -13.28696 -13.06858 -12.75237 -12.45122 -12.42326 -12.29250 -12.19696 -12.07115 -11.62860 -11.47430 -11.28924 -11.11388 -11.03398 -10.91252 -10.35237 -10.32253 -10.09430 -9.62550 -8.87808 -8.66547 -8.48565 -8.44038 -8.40084 -7.86413 -7.78703 -6.20189 -3.90555 2.27162 2.38174 2.54224 2.67288 2.92842 3.22094 3.26456 3.33333 4.05462 4.35492 4.48043 4.64556 4.70319 4.81638 5.01955 5.04484 5.16509 5.24336 5.29471 5.37179 5.47125 5.51948 5.62499 5.71241 5.74293 5.76518 5.79406 5.90290 6.04898 6.08626 6.14098 6.20797 6.35528 6.44595 6.61327 6.80763 6.97515 7.20528 7.21581 7.25814 7.49490 7.75511 8.01925 8.38170 8.57952 9.05998 9.24550 9.44093 9.83478 10.66466 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.017164 B = 0.005145 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.935510 B = 5441.245891 C = 6621.288771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.020 4.020 3 C -0.143 4.143 4 C 0.003 3.997 5 C -0.180 4.180 6 C 0.011 3.989 7 C 0.537 3.463 8 O -0.570 6.570 9 N -0.395 5.395 10 C -0.302 4.302 11 H 0.115 0.885 12 C 0.030 3.970 13 N -0.868 5.868 14 Si 0.939 3.061 15 H -0.266 1.266 16 H -0.280 1.280 17 H -0.281 1.281 18 C 0.470 3.530 19 C -0.118 4.118 20 C -0.076 4.076 21 C -0.207 4.207 22 C 0.113 3.887 23 N -0.483 5.483 24 N -0.256 5.256 25 N -0.291 5.291 26 C 0.091 3.909 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.153 0.847 35 H 0.272 0.728 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.129 0.871 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.981 5.336 -15.567 16.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.040 4.040 3 C -0.201 4.201 4 C -0.121 4.121 5 C -0.209 4.209 6 C -0.150 4.150 7 C 0.325 3.675 8 O -0.451 6.451 9 N -0.112 5.112 10 C -0.429 4.429 11 H 0.133 0.867 12 C -0.173 4.173 13 N -0.506 5.506 14 Si 0.765 3.235 15 H -0.190 1.190 16 H -0.206 1.206 17 H -0.207 1.207 18 C 0.243 3.757 19 C -0.140 4.140 20 C -0.102 4.102 21 C -0.227 4.227 22 C -0.046 4.046 23 N -0.196 5.196 24 N -0.089 5.089 25 N -0.079 5.079 26 C -0.050 4.050 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.171 0.829 35 H 0.084 0.916 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.146 0.854 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.956 4.343 -15.194 15.923 hybrid contribution 0.362 0.256 0.779 0.897 sum 2.318 4.598 -14.415 15.307 Atomic orbital electron populations 1.21805 0.93376 1.02501 1.02258 1.19571 0.96542 0.95154 0.92701 1.21847 1.00919 0.94947 1.02359 1.21178 0.91713 1.01389 0.97812 1.21345 1.02904 1.05385 0.91218 1.22238 0.94889 1.02052 0.95820 1.16449 0.84399 0.83285 0.83390 1.90617 1.34147 1.54566 1.65757 1.41066 1.21792 1.36896 1.11485 1.19939 1.07508 1.29470 0.85972 0.86743 1.25333 0.94747 0.96728 1.00542 1.69549 1.07394 1.35922 1.37778 0.85648 0.78815 0.78398 0.80618 1.18995 1.20609 1.20663 1.17304 0.85712 0.87080 0.85581 1.21382 0.93087 1.00353 0.99190 1.20914 0.97152 0.95401 0.96760 1.21543 0.98623 0.97363 1.05193 1.21946 0.88838 0.97977 0.95805 1.67108 1.32626 1.11242 1.08582 1.73880 1.24001 1.20257 0.90806 1.45275 1.19282 1.35267 1.08052 1.21967 0.93991 1.02414 0.86585 0.91698 0.92220 0.92233 0.90689 0.91813 0.92879 0.92128 0.82897 0.91591 0.87552 0.87213 0.87275 0.85359 0.90427 0.89521 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.78 37.15 0.33 -1.06 16 2 C -0.02 -0.21 2.89 -91.77 -0.27 -0.47 16 3 C -0.14 -1.32 9.18 37.16 0.34 -0.98 16 4 C 0.00 0.05 5.84 -82.21 -0.48 -0.43 16 5 C -0.18 -3.42 9.96 -39.35 -0.39 -3.82 16 6 C 0.01 0.25 6.88 -82.78 -0.57 -0.32 16 7 C 0.54 14.57 7.59 -12.46 -0.09 14.48 16 8 O -0.57 -16.50 16.53 5.29 0.09 -16.41 16 9 N -0.40 -11.05 2.73 -61.80 -0.17 -11.22 16 10 C -0.30 -8.72 9.52 -14.96 -0.14 -8.87 16 11 H 0.11 3.37 7.20 -52.49 -0.38 2.99 16 12 C 0.03 0.82 5.42 -17.47 -0.09 0.73 16 13 N -0.87 -23.63 9.77 55.50 0.54 -23.09 16 14 Si 0.94 21.41 29.56 -169.99 -5.02 16.38 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.47 12.00 1.29 -154.70 -0.20 11.80 16 19 C -0.12 -2.74 8.21 -39.22 -0.32 -3.06 16 20 C -0.08 -1.48 10.17 -39.31 -0.40 -1.88 16 21 C -0.21 -3.81 10.11 -39.40 -0.40 -4.21 16 22 C 0.11 2.34 11.18 -17.56 -0.20 2.14 16 23 N -0.48 -12.07 10.03 -12.35 -0.12 -12.19 16 24 N -0.26 -5.31 9.00 33.41 0.30 -5.01 16 25 N -0.29 -4.73 3.70 -63.86 -0.24 -4.96 16 26 C 0.09 0.99 10.89 59.85 0.65 1.64 16 27 H 0.06 0.68 7.35 -51.93 -0.38 0.29 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.66 7.42 -51.93 -0.39 0.27 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.15 2.74 7.46 -52.49 -0.39 2.35 16 35 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.11 2.52 8.06 -52.49 -0.42 2.10 16 37 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 39 H 0.13 2.28 8.06 -52.49 -0.42 1.86 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.66 7.45 -51.93 -0.39 0.27 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 354.95 15.07 5.35 5.35 Total: -1.00 -34.76 354.95 -7.22 -41.98 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.71 Total: 3.49 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -2.24 Total: 5.69 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.31 Total: -56.47 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.09 Total: -16.41 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.76 -7.22 -41.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892469532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.083 kcal (2) G-P(sol) polarization free energy of solvation -34.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds