Wall clock time and date at job start Tue Mar 31 2020 10:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.46995 * 2 1 4 4 C 1.50696 * 109.47369 * 120.00022 * 2 1 3 5 5 C 1.35343 * 126.37785 * 325.35079 * 4 2 1 6 6 C 1.41564 * 105.50451 * 180.11653 * 5 4 2 7 7 C 1.47568 * 126.52496 * 179.84064 * 6 5 4 8 8 O 1.21587 * 120.00161 * 354.82458 * 7 6 5 9 9 N 1.34776 * 119.99812 * 174.82071 * 7 6 5 10 10 C 1.37038 * 120.00206 * 185.42144 * 9 7 6 11 11 H 1.08002 * 119.99347 * 5.36220 * 10 9 7 12 12 C 1.38950 * 120.00219 * 185.35840 * 10 9 7 13 13 N 1.31396 * 119.99923 * 5.45968 * 12 10 9 14 14 Si 1.86797 * 120.00007 * 185.45599 * 12 10 9 15 15 H 1.48493 * 109.47461 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46843 * 120.00476 * 14 12 10 17 17 H 1.48498 * 109.47172 * 239.99991 * 14 12 10 18 18 C 1.39344 * 119.99841 * 5.42457 * 9 7 6 19 19 C 1.39085 * 119.70032 * 84.88139 * 18 9 7 20 20 C 1.38374 * 119.09675 * 179.72269 * 19 18 9 21 21 C 1.38828 * 118.49603 * 0.53656 * 20 19 18 22 22 C 1.38150 * 119.31484 * 359.48370 * 21 20 19 23 23 N 1.31884 * 120.85088 * 0.25332 * 22 21 20 24 24 N 1.31874 * 106.94609 * 359.58516 * 6 5 4 25 25 N 1.28469 * 110.05987 * 0.25729 * 24 6 5 26 26 C 1.46502 * 124.87763 * 180.02562 * 25 24 6 27 27 H 1.09003 * 109.47526 * 299.99868 * 1 2 3 28 28 H 1.08994 * 109.47323 * 59.99996 * 1 2 3 29 29 H 1.09004 * 109.47232 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47526 * 240.00132 * 2 1 3 31 31 H 1.08998 * 109.46874 * 60.00231 * 3 2 1 32 32 H 1.09007 * 109.46892 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47088 * 300.00148 * 3 2 1 34 34 H 1.08000 * 127.24778 * 359.97438 * 5 4 2 35 35 H 0.97003 * 119.99708 * 179.97438 * 13 12 10 36 36 H 1.08000 * 120.45556 * 359.97438 * 19 18 9 37 37 H 1.08001 * 120.75285 * 180.29106 * 20 19 18 38 38 H 1.08001 * 120.34834 * 179.75303 * 21 20 19 39 39 H 1.08000 * 119.57468 * 180.22824 * 22 21 20 40 40 H 1.08990 * 109.47064 * 90.02665 * 26 25 24 41 41 H 1.08997 * 109.47235 * 210.02922 * 26 25 24 42 42 H 1.08999 * 109.46749 * 330.02498 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.4548 -0.7017 2.4544 6 6 2.2884 -1.5022 3.2719 7 6 2.0885 -1.8022 4.7028 8 8 1.1834 -1.2691 5.3152 9 7 2.9092 -2.6673 5.3310 10 6 2.6581 -3.0313 6.6281 11 1 1.7569 -2.6941 7.1186 12 6 3.5627 -3.8342 7.3120 13 7 4.7080 -4.1559 6.7541 14 14 3.1507 -4.4560 9.0245 15 1 1.8105 -3.9563 9.4235 16 1 3.1448 -5.9410 9.0237 17 1 4.1692 -3.9656 9.9875 18 6 4.0132 -3.1914 4.6616 19 6 5.2048 -2.4746 4.6309 20 6 6.2949 -3.0096 3.9674 21 6 6.1522 -4.2425 3.3455 22 6 4.9387 -4.8991 3.4158 23 7 3.9183 -4.3672 4.0601 24 7 3.2746 -1.9332 2.5098 25 7 3.1391 -1.4797 1.3155 26 6 4.0535 -1.7575 0.2051 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 0.5498 -0.1897 2.7466 35 1 5.3397 -4.7161 7.2317 36 1 5.2794 -1.5155 5.1216 37 1 7.2344 -2.4781 3.9308 38 1 6.9824 -4.6859 2.8159 39 1 4.8241 -5.8602 2.9367 40 1 3.7241 -2.6531 -0.3215 41 1 4.0571 -0.9121 -0.4829 42 1 5.0598 -1.9139 0.5937 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892469532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:07 Heat of formation + Delta-G solvation = 76.007510 kcal Electronic energy + Delta-G solvation = -27018.394904 eV Core-core repulsion = 23386.260914 eV Total energy + Delta-G solvation = -3632.133990 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.58351 -41.21961 -39.53106 -36.66626 -36.61302 -34.40089 -33.73898 -32.85744 -30.70448 -30.51521 -28.70293 -27.99572 -26.93190 -24.53448 -23.99249 -23.78673 -23.15170 -21.16379 -20.22203 -19.91627 -18.02471 -17.64715 -17.32108 -17.08624 -16.82740 -16.56407 -15.91830 -15.67519 -15.38652 -15.11614 -14.85076 -14.64448 -14.50359 -14.13283 -13.88240 -13.71587 -13.47791 -13.44925 -13.36753 -12.98250 -12.94622 -12.79339 -12.51939 -12.32394 -12.15830 -12.08102 -11.75542 -11.62009 -11.53254 -10.90661 -10.41791 -10.25175 -9.94584 -9.81488 -9.70384 -9.55959 -8.19126 -6.05751 0.67640 0.74862 0.90919 1.20184 1.35707 1.41113 1.51068 1.75089 2.19000 2.43929 2.75851 3.13420 3.31569 3.49272 3.62234 3.87474 4.07354 4.16709 4.23139 4.27943 4.37615 4.44690 4.53005 4.60564 4.64566 4.68097 4.70840 4.77960 4.85359 4.93749 5.01499 5.04874 5.17273 5.17517 5.32912 5.40341 5.41766 5.48168 5.57935 5.61478 5.85922 6.04261 6.15201 6.43764 6.92785 7.09355 7.30162 7.65461 7.83261 8.58585 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.017164 B = 0.005145 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.935510 B = 5441.245891 C = 6621.288771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.016 4.016 3 C -0.140 4.140 4 C 0.032 3.968 5 C -0.207 4.207 6 C -0.034 4.034 7 C 0.519 3.481 8 O -0.615 6.615 9 N -0.410 5.410 10 C -0.348 4.348 11 H 0.088 0.912 12 C -0.001 4.001 13 N -0.873 5.873 14 Si 1.004 2.996 15 H -0.271 1.271 16 H -0.271 1.271 17 H -0.265 1.265 18 C 0.454 3.546 19 C -0.140 4.140 20 C -0.066 4.066 21 C -0.185 4.185 22 C 0.100 3.900 23 N -0.522 5.522 24 N -0.265 5.265 25 N -0.281 5.281 26 C 0.076 3.924 27 H 0.049 0.951 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.109 0.891 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.148 0.852 35 H 0.275 0.725 36 H 0.084 0.916 37 H 0.148 0.852 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.097 0.903 41 H 0.128 0.872 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.516 4.733 -19.063 20.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.036 4.036 3 C -0.198 4.198 4 C -0.094 4.094 5 C -0.236 4.236 6 C -0.192 4.192 7 C 0.309 3.691 8 O -0.500 6.500 9 N -0.126 5.126 10 C -0.474 4.474 11 H 0.106 0.894 12 C -0.203 4.203 13 N -0.510 5.510 14 Si 0.826 3.174 15 H -0.196 1.196 16 H -0.197 1.197 17 H -0.190 1.190 18 C 0.228 3.772 19 C -0.163 4.163 20 C -0.092 4.092 21 C -0.205 4.205 22 C -0.058 4.058 23 N -0.236 5.236 24 N -0.101 5.101 25 N -0.069 5.069 26 C -0.062 4.062 27 H 0.068 0.932 28 H 0.109 0.891 29 H 0.067 0.933 30 H 0.127 0.873 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.166 0.834 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.165 0.835 38 H 0.178 0.822 39 H 0.175 0.825 40 H 0.116 0.884 41 H 0.147 0.853 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.539 3.727 -18.718 19.618 hybrid contribution -0.332 0.424 1.664 1.750 sum 4.207 4.152 -17.053 18.049 Atomic orbital electron populations 1.21829 0.92965 1.02107 1.03126 1.19840 0.96842 0.95753 0.91154 1.21841 1.01148 0.93774 1.03018 1.21803 0.90127 0.99352 0.98083 1.21455 1.03358 1.06178 0.92566 1.21816 0.97682 1.05308 0.94415 1.17225 0.83826 0.82726 0.85311 1.90529 1.35860 1.56157 1.67413 1.41273 1.22780 1.37062 1.11512 1.19907 1.07885 1.32000 0.87639 0.89439 1.26144 0.94324 0.95909 1.03964 1.69733 1.07412 1.35124 1.38737 0.84725 0.78560 0.77941 0.76172 1.19564 1.19653 1.19033 1.17263 0.85371 0.87841 0.86682 1.21315 0.93977 0.99881 1.01088 1.21344 0.97144 0.95838 0.94897 1.21987 0.98962 0.96110 1.03421 1.22578 0.88967 0.99063 0.95168 1.67017 1.34947 1.11570 1.10020 1.73773 1.23409 1.20595 0.92340 1.45873 1.19771 1.33548 1.07757 1.22526 0.93017 1.05266 0.85398 0.93188 0.89056 0.93304 0.87304 0.93661 0.92499 0.89045 0.83383 0.91409 0.89816 0.83451 0.82201 0.82503 0.88443 0.85340 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.78 71.98 0.63 -1.87 16 2 C -0.02 -0.29 2.89 -11.54 -0.03 -0.32 16 3 C -0.14 -2.12 9.18 71.98 0.66 -1.46 16 4 C 0.03 0.94 5.84 41.39 0.24 1.18 16 5 C -0.21 -8.30 9.96 22.42 0.22 -8.08 16 6 C -0.03 -1.66 6.88 42.42 0.29 -1.37 16 7 C 0.52 30.84 7.59 86.71 0.66 31.49 16 8 O -0.61 -39.41 16.53 -3.99 -0.07 -39.48 16 9 N -0.41 -24.66 2.73 -467.69 -1.28 -25.94 16 10 C -0.35 -21.63 9.52 84.05 0.80 -20.83 16 11 H 0.09 5.70 7.20 -2.91 -0.02 5.67 16 12 C 0.00 -0.03 5.42 84.93 0.46 0.43 16 13 N -0.87 -48.37 9.77 21.66 0.21 -48.16 16 14 Si 1.00 45.26 29.56 68.60 2.03 47.29 16 15 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 18 C 0.45 24.02 1.29 132.93 0.17 24.19 16 19 C -0.14 -6.66 8.21 22.51 0.18 -6.47 16 20 C -0.07 -2.43 10.17 22.44 0.23 -2.20 16 21 C -0.18 -6.11 10.11 22.39 0.23 -5.88 16 22 C 0.10 3.96 11.18 84.66 0.95 4.90 16 23 N -0.52 -26.45 10.03 -192.99 -1.94 -28.39 16 24 N -0.27 -11.20 9.00 -48.21 -0.43 -11.64 16 25 N -0.28 -8.70 3.70 -355.94 -1.32 -10.01 16 26 C 0.08 1.34 10.89 127.77 1.39 2.73 16 27 H 0.05 1.02 7.35 -2.39 -0.02 1.01 16 28 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.11 1.31 7.42 -2.39 -0.02 1.29 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.15 5.83 7.46 -2.91 -0.02 5.81 16 35 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 36 H 0.08 4.22 8.06 -2.91 -0.02 4.20 16 37 H 0.15 4.24 8.06 -2.91 -0.02 4.21 16 38 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 39 H 0.16 5.11 8.06 -2.91 -0.02 5.08 16 40 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.13 1.21 7.45 -2.39 -0.02 1.19 16 42 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -85.21 354.95 5.32 -79.89 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 1.02 Total: 19.99 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 7.08 Total: 16.45 kcal Atomic # 7 Polarization: -119.39 SS G_CDS: -4.75 Total: -124.14 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.07 Total: -39.48 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -85.21 5.32 -79.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892469532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.899 kcal (2) G-P(sol) polarization free energy of solvation -85.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds