Wall clock time and date at job start Tue Mar 31 2020 10:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47361 * 2 1 4 4 C 1.50707 * 109.47072 * 239.99751 * 2 1 3 5 5 C 1.39634 * 126.05296 * 84.71872 * 4 2 1 6 6 C 1.38549 * 105.34301 * 179.84918 * 5 4 2 7 7 C 1.46974 * 126.89731 * 180.10341 * 6 5 4 8 8 O 1.21655 * 119.99732 * 187.62084 * 7 6 5 9 9 N 1.34774 * 120.00208 * 7.62246 * 7 6 5 10 10 C 1.36978 * 119.99946 * 8.46488 * 9 7 6 11 11 H 1.08000 * 119.99837 * 38.35506 * 10 9 7 12 12 C 1.38979 * 120.00018 * 218.35762 * 10 9 7 13 13 N 1.31376 * 120.00131 * 6.57023 * 12 10 9 14 14 Si 1.86797 * 119.99865 * 186.57325 * 12 10 9 15 15 H 1.48503 * 109.47036 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47335 * 119.99611 * 14 12 10 17 17 H 1.48506 * 109.47178 * 239.99902 * 14 12 10 18 18 C 1.39318 * 120.00278 * 188.46448 * 9 7 6 19 19 C 1.39100 * 119.69737 * 15.61845 * 18 9 7 20 20 C 1.38373 * 119.09477 * 179.97438 * 19 18 9 21 21 C 1.38841 * 118.49530 * 359.97438 * 20 19 18 22 22 C 1.38148 * 119.31327 * 0.02562 * 21 20 19 23 23 N 1.31875 * 120.85854 * 359.73981 * 22 21 20 24 24 N 1.36659 * 106.20517 * 0.40450 * 6 5 4 25 25 C 1.46496 * 125.19980 * 179.74175 * 24 6 5 26 26 N 1.28445 * 109.60569 * 359.73377 * 24 6 5 27 27 H 1.08999 * 109.47062 * 60.00222 * 1 2 3 28 28 H 1.09001 * 109.47038 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47298 * 300.00145 * 1 2 3 30 30 H 1.09000 * 109.47383 * 120.00218 * 2 1 3 31 31 H 1.09002 * 109.47512 * 59.99916 * 3 2 1 32 32 H 1.08997 * 109.47713 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47336 * 299.99694 * 3 2 1 34 34 H 1.07997 * 127.33084 * 359.97438 * 5 4 2 35 35 H 0.96997 * 119.99618 * 180.02562 * 13 12 10 36 36 H 1.07995 * 120.45090 * 359.96009 * 19 18 9 37 37 H 1.08000 * 120.75170 * 180.02562 * 20 19 18 38 38 H 1.08002 * 120.33568 * 180.02562 * 21 20 19 39 39 H 1.07997 * 119.56847 * 180.02562 * 22 21 20 40 40 H 1.09005 * 109.46789 * 266.85587 * 25 24 6 41 41 H 1.09001 * 109.47385 * 26.85334 * 25 24 6 42 42 H 1.08996 * 109.47721 * 146.85556 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 2.2083 -0.1418 -2.4936 6 6 2.6861 -1.1669 -3.2939 7 6 3.0347 -1.0842 -4.7192 8 8 3.3123 -2.0947 -5.3371 9 7 3.0470 0.1111 -5.3418 10 6 2.9061 1.2635 -4.6148 11 1 3.3753 1.3514 -3.6460 12 6 2.1595 2.3194 -5.1238 13 7 1.4833 2.1678 -6.2399 14 14 2.1175 3.9542 -4.2210 15 1 2.9563 3.8663 -2.9987 16 1 2.6442 5.0228 -5.1075 17 1 0.7183 4.2728 -3.8388 18 6 3.2029 0.1747 -6.7248 19 6 3.0202 -0.9709 -7.4923 20 6 3.1777 -0.8934 -8.8648 21 6 3.5132 0.3319 -9.4250 22 6 3.6792 1.4290 -8.6020 23 7 3.5181 1.3264 -7.2972 24 7 2.7616 -2.2720 -2.4935 25 6 3.2139 -3.5972 -2.9241 26 7 2.3756 -1.9712 -1.3059 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 2.0152 0.8803 -2.7843 35 1 0.9625 2.9049 -6.5953 36 1 2.7593 -1.9080 -7.0233 37 1 3.0419 -1.7661 -9.4864 38 1 3.6430 0.4262 -10.4930 39 1 3.9397 2.3842 -9.0334 40 1 2.3538 -4.1931 -3.2295 41 1 3.8997 -3.4916 -3.7647 42 1 3.7246 -4.0928 -2.0986 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892469609.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:10 Heat of formation + Delta-G solvation = 111.789041 kcal Electronic energy + Delta-G solvation = -26898.335158 eV Core-core repulsion = 23267.752771 eV Total energy + Delta-G solvation = -3630.582386 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.92753 -39.81766 -37.83535 -35.71057 -35.10155 -32.05847 -31.73444 -31.16856 -30.73034 -28.75371 -26.90837 -26.33445 -25.39212 -23.44041 -22.62599 -22.12508 -21.10546 -19.82544 -18.82767 -17.84163 -16.66831 -15.82996 -15.79904 -15.41970 -15.25463 -14.86082 -14.71243 -14.02532 -13.88030 -13.69388 -13.40401 -13.18909 -13.07359 -12.81037 -12.51302 -12.22231 -12.11141 -12.01545 -11.78678 -11.66448 -11.42857 -11.07981 -11.05421 -10.93119 -10.87750 -10.72360 -10.43661 -10.00361 -9.38213 -9.10722 -8.84485 -8.55831 -8.41222 -8.18082 -8.07190 -7.17055 -6.41749 -4.27818 1.77635 2.36576 2.50605 2.97889 3.09208 3.18649 3.20604 3.21623 3.90086 4.03270 4.25689 4.85105 4.90667 5.16955 5.27418 5.32304 5.45814 5.50212 5.52887 5.66414 5.68741 5.76156 5.81822 5.87455 5.97306 6.02563 6.11017 6.15175 6.20029 6.25765 6.33122 6.43345 6.51870 6.59183 6.77154 6.81779 6.98787 7.19208 7.27707 7.30390 7.35285 7.38159 7.82818 8.19171 8.63997 8.77485 8.86774 9.39060 9.54414 10.56060 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.013019 B = 0.006194 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.178495 B = 4519.279300 C = 6351.892859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.003 4.003 3 C -0.145 4.145 4 C 0.010 3.990 5 C -0.161 4.161 6 C -0.010 4.010 7 C 0.549 3.451 8 O -0.576 6.576 9 N -0.351 5.351 10 C -0.363 4.363 11 H 0.109 0.891 12 C 0.073 3.927 13 N -0.825 5.825 14 Si 0.917 3.083 15 H -0.261 1.261 16 H -0.276 1.276 17 H -0.278 1.278 18 C 0.392 3.608 19 C -0.208 4.208 20 C -0.077 4.077 21 C -0.233 4.233 22 C 0.115 3.885 23 N -0.444 5.444 24 N -0.275 5.275 25 C 0.094 3.906 26 N -0.294 5.294 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.186 0.814 35 H 0.272 0.728 36 H 0.157 0.843 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.136 0.864 40 H 0.075 0.925 41 H 0.108 0.892 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.285 -2.534 4.808 5.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 C -0.203 4.203 4 C -0.147 4.147 5 C -0.189 4.189 6 C -0.137 4.137 7 C 0.341 3.659 8 O -0.462 6.462 9 N -0.058 5.058 10 C -0.490 4.490 11 H 0.126 0.874 12 C -0.139 4.139 13 N -0.456 5.456 14 Si 0.742 3.258 15 H -0.185 1.185 16 H -0.201 1.201 17 H -0.204 1.204 18 C 0.163 3.837 19 C -0.230 4.230 20 C -0.103 4.103 21 C -0.255 4.255 22 C -0.046 4.046 23 N -0.158 5.158 24 N -0.062 5.062 25 C -0.047 4.047 26 N -0.126 5.126 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.203 0.797 35 H 0.083 0.917 36 H 0.174 0.826 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.153 0.847 40 H 0.094 0.906 41 H 0.126 0.874 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.529 -3.349 5.551 6.504 hybrid contribution -0.383 0.883 -0.959 1.359 sum 0.145 -2.466 4.592 5.214 Atomic orbital electron populations 1.21815 0.94513 1.01761 1.01852 1.19287 0.95215 0.94823 0.92946 1.21838 1.01409 0.94978 1.02079 1.21955 1.05643 0.90387 0.96754 1.23136 1.03266 1.01694 0.90834 1.21131 1.10594 0.88228 0.93730 1.16990 0.81058 0.82948 0.84911 1.90509 1.53610 1.35540 1.66532 1.40603 1.56038 1.05852 1.03346 1.19687 1.33696 0.91700 1.03916 0.87389 1.25262 0.93591 0.99627 0.95426 1.69790 1.24768 1.32675 1.18382 0.86034 0.78308 0.81697 0.79767 1.18525 1.20142 1.20367 1.18277 0.91911 0.88662 0.84871 1.22532 1.05339 1.01245 0.93933 1.21167 0.97660 0.96975 0.94503 1.21703 1.09141 0.94760 0.99870 1.22213 0.96102 0.97381 0.88881 1.67124 1.11911 1.25348 1.11402 1.45373 1.46333 1.09373 1.05157 1.22147 1.01432 0.79373 1.01744 1.72917 1.18365 1.17966 1.03392 0.92117 0.92866 0.92542 0.90591 0.92496 0.92414 0.91750 0.79697 0.91723 0.82572 0.86598 0.86924 0.84664 0.90646 0.87373 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.18 37.16 0.34 -1.50 16 2 C 0.00 -0.04 3.38 -91.77 -0.31 -0.35 16 3 C -0.15 -1.93 8.79 37.15 0.33 -1.60 16 4 C 0.01 0.18 6.12 -82.47 -0.51 -0.33 16 5 C -0.16 -3.30 8.18 -38.95 -0.32 -3.62 16 6 C -0.01 -0.22 6.81 -82.06 -0.56 -0.78 16 7 C 0.55 13.07 7.42 -12.72 -0.09 12.98 16 8 O -0.58 -13.60 11.50 5.23 0.06 -13.54 16 9 N -0.35 -8.84 2.78 -62.00 -0.17 -9.02 16 10 C -0.36 -8.95 6.36 -14.98 -0.10 -9.04 16 11 H 0.11 2.56 5.81 -52.49 -0.30 2.25 16 12 C 0.07 1.78 4.73 -17.47 -0.08 1.70 16 13 N -0.82 -21.42 10.67 55.50 0.59 -20.82 16 14 Si 0.92 18.86 29.56 -169.99 -5.02 13.84 16 15 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 16 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 17 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 18 C 0.39 9.86 6.06 -154.71 -0.94 8.93 16 19 C -0.21 -4.79 8.84 -39.21 -0.35 -5.14 16 20 C -0.08 -1.51 10.17 -39.31 -0.40 -1.91 16 21 C -0.23 -4.37 10.11 -39.39 -0.40 -4.77 16 22 C 0.11 2.39 11.18 -17.57 -0.20 2.20 16 23 N -0.44 -10.95 7.17 -12.36 -0.09 -11.04 16 24 N -0.27 -5.30 3.75 -63.89 -0.24 -5.54 16 25 C 0.09 1.43 10.84 59.84 0.65 2.08 16 26 N -0.29 -5.57 11.90 33.63 0.40 -5.17 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.92 7.37 -51.93 -0.38 0.54 16 34 H 0.19 3.88 4.75 -52.49 -0.25 3.63 16 35 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.16 3.67 5.23 -52.65 -0.28 3.39 16 37 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.14 2.41 8.06 -52.49 -0.42 1.99 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.11 1.75 6.31 -51.93 -0.33 1.42 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -29.43 343.91 -7.54 -36.97 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.33 Total: 10.28 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.93 Total: -1.15 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.49 Total: -51.58 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.06 Total: -13.54 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.43 -7.54 -36.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892469609.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.763 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds