Wall clock time and date at job start Tue Mar 31 2020 10:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47361 * 2 1 4 4 C 1.50707 * 109.47072 * 239.99751 * 2 1 3 5 5 C 1.39634 * 126.05296 * 84.71872 * 4 2 1 6 6 C 1.38549 * 105.34301 * 179.84918 * 5 4 2 7 7 C 1.46974 * 126.89731 * 180.10341 * 6 5 4 8 8 O 1.21655 * 119.99732 * 187.62084 * 7 6 5 9 9 N 1.34774 * 120.00208 * 7.62246 * 7 6 5 10 10 C 1.36978 * 119.99946 * 8.46488 * 9 7 6 11 11 H 1.08000 * 119.99837 * 38.35506 * 10 9 7 12 12 C 1.38979 * 120.00018 * 218.35762 * 10 9 7 13 13 N 1.31376 * 120.00131 * 6.57023 * 12 10 9 14 14 Si 1.86797 * 119.99865 * 186.57325 * 12 10 9 15 15 H 1.48503 * 109.47036 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47335 * 119.99611 * 14 12 10 17 17 H 1.48506 * 109.47178 * 239.99902 * 14 12 10 18 18 C 1.39318 * 120.00278 * 188.46448 * 9 7 6 19 19 C 1.39100 * 119.69737 * 15.61845 * 18 9 7 20 20 C 1.38373 * 119.09477 * 179.97438 * 19 18 9 21 21 C 1.38841 * 118.49530 * 359.97438 * 20 19 18 22 22 C 1.38148 * 119.31327 * 0.02562 * 21 20 19 23 23 N 1.31875 * 120.85854 * 359.73981 * 22 21 20 24 24 N 1.36659 * 106.20517 * 0.40450 * 6 5 4 25 25 C 1.46496 * 125.19980 * 179.74175 * 24 6 5 26 26 N 1.28445 * 109.60569 * 359.73377 * 24 6 5 27 27 H 1.08999 * 109.47062 * 60.00222 * 1 2 3 28 28 H 1.09001 * 109.47038 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47298 * 300.00145 * 1 2 3 30 30 H 1.09000 * 109.47383 * 120.00218 * 2 1 3 31 31 H 1.09002 * 109.47512 * 59.99916 * 3 2 1 32 32 H 1.08997 * 109.47713 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47336 * 299.99694 * 3 2 1 34 34 H 1.07997 * 127.33084 * 359.97438 * 5 4 2 35 35 H 0.96997 * 119.99618 * 180.02562 * 13 12 10 36 36 H 1.07995 * 120.45090 * 359.96009 * 19 18 9 37 37 H 1.08000 * 120.75170 * 180.02562 * 20 19 18 38 38 H 1.08002 * 120.33568 * 180.02562 * 21 20 19 39 39 H 1.07997 * 119.56847 * 180.02562 * 22 21 20 40 40 H 1.09005 * 109.46789 * 266.85587 * 25 24 6 41 41 H 1.09001 * 109.47385 * 26.85334 * 25 24 6 42 42 H 1.08996 * 109.47721 * 146.85556 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 2.2083 -0.1418 -2.4936 6 6 2.6861 -1.1669 -3.2939 7 6 3.0347 -1.0842 -4.7192 8 8 3.3123 -2.0947 -5.3371 9 7 3.0470 0.1111 -5.3418 10 6 2.9061 1.2635 -4.6148 11 1 3.3753 1.3514 -3.6460 12 6 2.1595 2.3194 -5.1238 13 7 1.4833 2.1678 -6.2399 14 14 2.1175 3.9542 -4.2210 15 1 2.9563 3.8663 -2.9987 16 1 2.6442 5.0228 -5.1075 17 1 0.7183 4.2728 -3.8388 18 6 3.2029 0.1747 -6.7248 19 6 3.0202 -0.9709 -7.4923 20 6 3.1777 -0.8934 -8.8648 21 6 3.5132 0.3319 -9.4250 22 6 3.6792 1.4290 -8.6020 23 7 3.5181 1.3264 -7.2972 24 7 2.7616 -2.2720 -2.4935 25 6 3.2139 -3.5972 -2.9241 26 7 2.3756 -1.9712 -1.3059 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 2.0152 0.8803 -2.7843 35 1 0.9625 2.9049 -6.5953 36 1 2.7593 -1.9080 -7.0233 37 1 3.0419 -1.7661 -9.4864 38 1 3.6430 0.4262 -10.4930 39 1 3.9397 2.3842 -9.0334 40 1 2.3538 -4.1931 -3.2295 41 1 3.8997 -3.4916 -3.7647 42 1 3.7246 -4.0928 -2.0986 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892469609.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:10 Heat of formation + Delta-G solvation = 96.267816 kcal Electronic energy + Delta-G solvation = -26899.008209 eV Core-core repulsion = 23267.752771 eV Total energy + Delta-G solvation = -3631.255437 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.44854 -41.53597 -39.53639 -37.19279 -36.60056 -33.78921 -33.18280 -32.82423 -32.33477 -30.38986 -28.01340 -27.67969 -27.14698 -25.10228 -24.21509 -23.58259 -22.67355 -21.36582 -20.48793 -19.34945 -18.33277 -17.47139 -17.38259 -17.07516 -16.84598 -16.54185 -16.16278 -15.67882 -15.28469 -15.05011 -14.99182 -14.69322 -14.48913 -14.22397 -14.13064 -13.71348 -13.44081 -13.38417 -13.28270 -13.11234 -12.85296 -12.67740 -12.61410 -12.21729 -12.04158 -12.03203 -11.95073 -11.48516 -11.07350 -10.82629 -10.58534 -10.28825 -9.97428 -9.79822 -9.65161 -8.93260 -8.22954 -6.15391 0.11114 0.70588 0.89570 1.45534 1.47346 1.52985 1.61365 1.71032 2.22967 2.32037 2.58840 3.11905 3.52334 3.53001 3.78376 4.04097 4.07746 4.18847 4.22473 4.32002 4.37899 4.50660 4.54491 4.55646 4.63141 4.67236 4.73282 4.85075 4.91509 4.96756 5.08751 5.15301 5.16578 5.28774 5.33853 5.44179 5.47372 5.54588 5.57803 5.66035 5.75764 5.91894 6.09533 6.40147 6.91773 7.05811 7.19649 7.59797 7.80281 8.73894 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.013019 B = 0.006194 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.178495 B = 4519.279300 C = 6351.892859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.003 4.003 3 C -0.144 4.144 4 C 0.012 3.988 5 C -0.167 4.167 6 C -0.039 4.039 7 C 0.540 3.460 8 O -0.586 6.586 9 N -0.368 5.368 10 C -0.371 4.371 11 H 0.109 0.891 12 C 0.037 3.963 13 N -0.857 5.857 14 Si 0.974 3.026 15 H -0.247 1.247 16 H -0.283 1.283 17 H -0.272 1.272 18 C 0.359 3.641 19 C -0.232 4.232 20 C -0.073 4.073 21 C -0.215 4.215 22 C 0.098 3.902 23 N -0.476 5.476 24 N -0.275 5.275 25 C 0.089 3.911 26 N -0.292 5.292 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.177 0.823 35 H 0.269 0.731 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.206 -2.251 5.355 5.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.023 4.023 3 C -0.202 4.202 4 C -0.144 4.144 5 C -0.196 4.196 6 C -0.165 4.165 7 C 0.332 3.668 8 O -0.472 6.472 9 N -0.076 5.076 10 C -0.498 4.498 11 H 0.126 0.874 12 C -0.171 4.171 13 N -0.490 5.490 14 Si 0.796 3.204 15 H -0.170 1.170 16 H -0.209 1.209 17 H -0.197 1.197 18 C 0.131 3.869 19 C -0.255 4.255 20 C -0.099 4.099 21 C -0.236 4.236 22 C -0.062 4.062 23 N -0.190 5.190 24 N -0.063 5.063 25 C -0.051 4.051 26 N -0.125 5.125 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.194 0.806 35 H 0.079 0.921 36 H 0.162 0.838 37 H 0.172 0.828 38 H 0.177 0.823 39 H 0.179 0.821 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.461 -3.088 6.102 6.854 hybrid contribution -0.316 0.713 -1.220 1.449 sum 0.144 -2.375 4.881 5.430 Atomic orbital electron populations 1.21792 0.93367 1.01693 1.02673 1.19493 0.96089 0.95158 0.91565 1.21844 1.01073 0.94337 1.02897 1.22542 1.04575 0.90024 0.97294 1.23096 1.03414 1.01209 0.91865 1.21081 1.12294 0.89883 0.93287 1.17330 0.80866 0.82774 0.85845 1.90473 1.54062 1.35607 1.67068 1.40834 1.56680 1.06238 1.03855 1.19850 1.33839 0.92020 1.04048 0.87411 1.25996 0.92939 1.02301 0.95904 1.69927 1.25855 1.33222 1.19951 0.85174 0.78660 0.77479 0.79057 1.16966 1.20860 1.19697 1.18595 0.93487 0.89630 0.85142 1.22572 1.06977 1.00314 0.95655 1.21623 0.95960 0.98895 0.93380 1.22145 1.06234 0.93352 1.01897 1.22834 0.95760 0.99441 0.88196 1.67069 1.12952 1.25570 1.13386 1.45696 1.45879 1.09877 1.04849 1.22366 1.01997 0.78119 1.02587 1.72932 1.18256 1.18286 1.03072 0.93559 0.93390 0.89451 0.88992 0.89401 0.92988 0.93187 0.80648 0.92133 0.83839 0.82849 0.82311 0.82056 0.89343 0.88646 0.86895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.18 71.98 0.66 -2.66 16 2 C 0.00 -0.08 3.38 -11.54 -0.04 -0.12 16 3 C -0.14 -3.55 8.79 71.98 0.63 -2.92 16 4 C 0.01 0.45 6.12 43.04 0.26 0.71 16 5 C -0.17 -7.00 8.18 22.68 0.19 -6.81 16 6 C -0.04 -1.73 6.81 40.76 0.28 -1.45 16 7 C 0.54 26.88 7.42 86.53 0.64 27.52 16 8 O -0.59 -28.90 11.50 -4.21 -0.05 -28.95 16 9 N -0.37 -19.35 2.78 -468.29 -1.30 -20.65 16 10 C -0.37 -18.95 6.36 84.07 0.53 -18.41 16 11 H 0.11 5.32 5.81 -2.91 -0.02 5.30 16 12 C 0.04 1.85 4.73 84.94 0.40 2.25 16 13 N -0.86 -45.75 10.67 21.67 0.23 -45.52 16 14 Si 0.97 39.15 29.56 68.60 2.03 41.18 16 15 H -0.25 -9.18 7.11 99.48 0.71 -8.48 16 16 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 17 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 18 C 0.36 18.68 6.06 132.94 0.81 19.48 16 19 C -0.23 -10.93 8.84 22.51 0.20 -10.73 16 20 C -0.07 -2.74 10.17 22.45 0.23 -2.51 16 21 C -0.22 -7.51 10.11 22.39 0.23 -7.29 16 22 C 0.10 3.98 11.18 84.67 0.95 4.93 16 23 N -0.48 -23.84 7.17 -193.00 -1.38 -25.22 16 24 N -0.27 -10.66 3.75 -356.05 -1.34 -11.99 16 25 C 0.09 2.69 10.84 127.77 1.39 4.08 16 26 N -0.29 -10.88 11.90 -47.50 -0.57 -11.45 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.37 7.37 -2.39 -0.02 1.36 16 34 H 0.18 7.62 4.75 -2.91 -0.01 7.61 16 35 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 36 H 0.14 7.01 5.23 -5.45 -0.03 6.98 16 37 H 0.15 4.52 8.06 -2.91 -0.02 4.50 16 38 H 0.16 4.06 8.06 -2.91 -0.02 4.03 16 39 H 0.16 5.48 8.06 -2.91 -0.02 5.46 16 40 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 41 H 0.09 3.16 6.31 -2.39 -0.02 3.14 16 42 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -66.30 343.91 6.01 -60.30 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: 1.03 Total: 36.24 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 7.35 Total: 6.07 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -4.36 Total: -114.83 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.05 Total: -28.95 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -66.30 6.01 -60.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892469609.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.564 kcal (2) G-P(sol) polarization free energy of solvation -66.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds