Wall clock time and date at job start Tue Mar 31 2020 11:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46849 * 2 1 4 4 C 1.52997 * 109.47130 * 119.99294 * 2 1 3 5 5 N 1.46498 * 109.47250 * 174.99906 * 4 2 1 6 6 C 1.35054 * 124.87734 * 125.00163 * 5 4 2 7 7 C 1.35346 * 107.24649 * 179.71104 * 6 5 4 8 8 C 1.41562 * 105.50314 * 0.41300 * 7 6 5 9 9 C 1.47559 * 126.53024 * 179.84895 * 8 7 6 10 10 O 1.21588 * 120.00011 * 354.20508 * 9 8 7 11 11 N 1.34774 * 120.00465 * 174.21038 * 9 8 7 12 12 C 1.37041 * 119.99623 * 4.67479 * 11 9 8 13 13 H 1.07999 * 120.00046 * 321.01505 * 12 11 9 14 14 C 1.38949 * 119.99751 * 141.01736 * 12 11 9 15 15 N 1.31387 * 120.00270 * 168.15606 * 14 12 11 16 16 Si 1.86801 * 120.00191 * 348.15593 * 14 12 11 17 17 H 1.48493 * 109.47369 * 88.14024 * 16 14 12 18 18 H 1.48508 * 109.47295 * 208.14173 * 16 14 12 19 19 H 1.48502 * 109.46966 * 328.13616 * 16 14 12 20 20 C 1.39341 * 120.00160 * 184.68270 * 11 9 8 21 21 C 1.39091 * 119.70035 * 139.61934 * 20 11 9 22 22 C 1.38370 * 119.09678 * 179.70153 * 21 20 11 23 23 C 1.38832 * 118.49303 * 0.57433 * 22 21 20 24 24 C 1.38155 * 119.31514 * 359.44096 * 23 22 21 25 25 N 1.31876 * 120.84920 * 0.27662 * 24 23 22 26 26 N 1.28472 * 124.88186 * 304.98140 * 5 4 2 27 27 H 1.09005 * 109.47082 * 300.00162 * 1 2 3 28 28 H 1.09002 * 109.47160 * 60.00432 * 1 2 3 29 29 H 1.09000 * 109.47073 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47203 * 240.00111 * 2 1 3 31 31 H 1.08989 * 109.47498 * 59.99711 * 3 2 1 32 32 H 1.09001 * 109.46924 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46887 * 299.99736 * 3 2 1 34 34 H 1.09003 * 109.47025 * 55.00595 * 4 2 1 35 35 H 1.08996 * 109.47922 * 295.00473 * 4 2 1 36 36 H 1.08005 * 126.37929 * 0.02562 * 6 5 4 37 37 H 1.07997 * 127.25094 * 180.28160 * 7 6 5 38 38 H 0.96998 * 120.00659 * 179.97438 * 15 14 12 39 39 H 1.07995 * 120.44751 * 359.97438 * 21 20 11 40 40 H 1.08002 * 120.75378 * 180.29497 * 22 21 20 41 41 H 1.08005 * 120.34550 * 179.71291 * 23 22 21 42 42 H 1.08004 * 119.57029 * 180.25159 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1907 6 6 4.3450 -0.3870 2.1483 7 6 5.6023 -0.6685 1.7338 8 6 5.4541 -1.2909 0.4711 9 6 6.5398 -1.7856 -0.3972 10 8 7.6999 -1.5813 -0.0961 11 7 6.2455 -2.4638 -1.5241 12 6 4.9400 -2.6113 -1.9138 13 1 4.1730 -2.7912 -1.1751 14 6 4.6032 -2.5295 -3.2594 15 7 3.4075 -2.8973 -3.6609 16 14 5.8505 -1.8966 -4.4976 17 1 6.6783 -3.0275 -4.9886 18 1 5.1392 -1.2709 -5.6413 19 1 6.7256 -0.8882 -3.8475 20 6 7.2687 -3.0151 -2.2927 21 6 7.1044 -4.2761 -2.8563 22 6 8.1259 -4.8089 -3.6225 23 6 9.2860 -4.0647 -3.7895 24 6 9.3811 -2.8188 -3.2001 25 7 8.3885 -2.3340 -2.4798 26 7 4.1605 -1.3498 0.2211 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6766 1.9564 0.8898 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6054 -1.7197 1.2953 35 1 1.7516 -0.1582 2.1370 36 1 4.0686 0.0942 3.0749 37 1 6.5246 -0.4599 2.2555 38 1 3.1722 -2.8398 -4.6002 39 1 6.1902 -4.8298 -2.7016 40 1 8.0250 -5.7837 -4.0766 41 1 10.1040 -4.4538 -4.3777 42 1 10.2800 -2.2346 -3.3307 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892474133.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:22 Heat of formation + Delta-G solvation = 88.742607 kcal Electronic energy + Delta-G solvation = -26696.994071 eV Core-core repulsion = 23065.412317 eV Total energy + Delta-G solvation = -3631.581755 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.43763 -41.76057 -39.70729 -37.33280 -36.96223 -34.11666 -33.30433 -33.02237 -31.69062 -30.96099 -28.10864 -27.82779 -27.06287 -25.15148 -24.23784 -23.11687 -22.19875 -21.20608 -20.50180 -20.12675 -18.34704 -17.75401 -17.63516 -17.31404 -16.99327 -16.67229 -15.98744 -15.91294 -15.59862 -15.34276 -15.01111 -14.68654 -14.48567 -14.43327 -14.18776 -13.99874 -13.83978 -13.79686 -13.17935 -13.08524 -12.83867 -12.79281 -12.72853 -12.17465 -12.13126 -11.94100 -11.75868 -11.55315 -11.19935 -10.99718 -10.81834 -10.49513 -10.16847 -10.00871 -9.83553 -9.29606 -8.51362 -6.17374 0.07522 0.44097 0.89850 1.12373 1.17848 1.37024 1.38994 1.75948 2.13987 2.36774 2.51261 2.79942 3.17170 3.50933 3.67090 3.87922 3.96261 4.03836 4.04331 4.17555 4.21683 4.29391 4.33518 4.45305 4.54098 4.61635 4.69380 4.79261 4.88706 4.89586 4.91762 4.95064 5.00225 5.11893 5.24549 5.29480 5.35872 5.41518 5.44724 5.52936 5.83081 6.05711 6.15442 6.39378 6.77175 7.06158 7.16578 7.39919 7.67487 8.58686 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.016770 B = 0.005242 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.224892 B = 5340.486594 C = 6392.183221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 C -0.139 4.139 4 C 0.122 3.878 5 N -0.285 5.285 6 C -0.002 4.002 7 C -0.211 4.211 8 C -0.042 4.042 9 C 0.560 3.440 10 O -0.570 6.570 11 N -0.416 5.416 12 C -0.320 4.320 13 H 0.126 0.874 14 C 0.056 3.944 15 N -0.885 5.885 16 Si 0.885 3.115 17 H -0.242 1.242 18 H -0.289 1.289 19 H -0.284 1.284 20 C 0.321 3.679 21 C -0.190 4.190 22 C -0.063 4.063 23 C -0.193 4.193 24 C 0.094 3.906 25 N -0.527 5.527 26 N -0.238 5.238 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.022 0.978 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.148 0.852 36 H 0.231 0.769 37 H 0.160 0.840 38 H 0.278 0.722 39 H 0.131 0.869 40 H 0.172 0.828 41 H 0.180 0.820 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.326 2.323 7.269 8.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.132 4.132 3 C -0.196 4.196 4 C 0.003 3.997 5 N -0.074 5.074 6 C -0.145 4.145 7 C -0.239 4.239 8 C -0.200 4.200 9 C 0.351 3.649 10 O -0.450 6.450 11 N -0.131 5.131 12 C -0.448 4.448 13 H 0.143 0.857 14 C -0.149 4.149 15 N -0.522 5.522 16 Si 0.712 3.288 17 H -0.166 1.166 18 H -0.216 1.216 19 H -0.210 1.210 20 C 0.095 3.905 21 C -0.213 4.213 22 C -0.088 4.088 23 C -0.214 4.214 24 C -0.064 4.064 25 N -0.242 5.242 26 N -0.075 5.075 27 H 0.105 0.895 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.166 0.834 36 H 0.247 0.753 37 H 0.178 0.822 38 H 0.088 0.912 39 H 0.149 0.851 40 H 0.189 0.811 41 H 0.197 0.803 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -3.778 2.890 6.923 8.400 hybrid contribution 0.963 -0.129 -0.893 1.320 sum -2.815 2.761 6.030 7.205 Atomic orbital electron populations 1.21694 0.91501 1.02642 1.03292 1.21372 0.98118 0.96498 0.97169 1.21764 0.99360 0.95505 1.03014 1.22459 0.71954 1.03709 1.01570 1.46332 1.09007 1.39703 1.12338 1.23422 0.88289 1.04633 0.98112 1.21906 0.99605 1.06906 0.95518 1.21674 0.90776 1.09558 0.98014 1.17916 0.87170 0.77548 0.82286 1.90635 1.20800 1.58524 1.74994 1.41552 1.05688 1.45497 1.20367 1.19509 0.81245 1.49633 0.94393 0.85718 1.25504 0.96505 0.95116 0.97813 1.69659 1.20419 1.44778 1.17321 0.86695 0.80875 0.80975 0.80287 1.16586 1.21569 1.20982 1.18842 0.87835 0.90136 0.93729 1.21859 1.02326 0.94456 1.02686 1.21856 0.91662 1.00953 0.94366 1.22423 0.99962 0.95838 1.03159 1.23177 0.96312 0.95024 0.91909 1.67386 1.01985 1.37119 1.17704 1.74288 1.05226 1.15200 1.12757 0.89495 0.92516 0.92252 0.93770 0.89382 0.95880 0.92868 0.88826 0.83395 0.75271 0.82248 0.91199 0.85079 0.81054 0.80307 0.80304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 9.19 71.98 0.66 -1.84 16 2 C -0.11 -2.93 2.95 -10.79 -0.03 -2.96 16 3 C -0.14 -3.45 9.08 71.98 0.65 -2.80 16 4 C 0.12 2.74 5.79 86.38 0.50 3.24 16 5 N -0.29 -9.22 2.86 -347.96 -1.00 -10.22 16 6 C 0.00 -0.07 11.40 83.53 0.95 0.89 16 7 C -0.21 -7.86 10.81 22.42 0.24 -7.62 16 8 C -0.04 -2.01 6.86 42.42 0.29 -1.72 16 9 C 0.56 31.12 7.55 86.70 0.65 31.77 16 10 O -0.57 -33.21 15.89 -3.99 -0.06 -33.27 16 11 N -0.42 -23.24 2.46 -467.70 -1.15 -24.39 16 12 C -0.32 -18.23 7.90 84.05 0.66 -17.57 16 13 H 0.13 7.44 5.87 -2.91 -0.02 7.42 16 14 C 0.06 3.15 5.06 84.93 0.43 3.58 16 15 N -0.88 -50.46 13.95 21.66 0.30 -50.15 16 16 Si 0.89 46.38 24.28 68.60 1.67 48.04 16 17 H -0.24 -11.73 5.83 99.48 0.58 -11.15 16 18 H -0.29 -14.81 7.11 99.48 0.71 -14.11 16 19 H -0.28 -16.46 6.75 99.48 0.67 -15.79 16 20 C 0.32 16.64 3.47 132.94 0.46 17.10 16 21 C -0.19 -8.56 7.03 22.51 0.16 -8.40 16 22 C -0.06 -2.16 9.59 22.44 0.22 -1.94 16 23 C -0.19 -6.05 10.11 22.39 0.23 -5.82 16 24 C 0.09 3.61 11.18 84.67 0.95 4.56 16 25 N -0.53 -26.58 8.04 -192.99 -1.55 -28.13 16 26 N -0.24 -10.70 8.29 -48.22 -0.40 -11.10 16 27 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 1.67 7.96 -2.39 -0.02 1.65 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.02 0.71 7.75 -2.39 -0.02 0.69 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.15 1.76 8.04 -2.39 -0.02 1.74 16 36 H 0.23 3.36 8.06 -2.91 -0.02 3.33 16 37 H 0.16 5.50 8.06 -2.91 -0.02 5.48 16 38 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 39 H 0.13 6.08 7.63 -2.91 -0.02 6.06 16 40 H 0.17 4.33 8.06 -2.91 -0.02 4.31 16 41 H 0.18 3.67 8.06 -2.91 -0.02 3.65 16 42 H 0.18 5.42 8.06 -2.91 -0.02 5.39 16 Total: -1.00 -83.51 348.13 5.69 -77.82 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.86 Total: 20.94 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 7.03 Total: 10.46 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -3.80 Total: -123.99 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.06 Total: -33.27 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.67 Total: 48.04 kcal Total: -83.51 5.69 -77.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892474133.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.565 kcal (2) G-P(sol) polarization free energy of solvation -83.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds