Wall clock time and date at job start Tue Mar 31 2020 10:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30220 * 124.92295 * 2 1 4 4 C 1.35556 * 109.70576 * 179.97438 * 3 2 1 5 5 C 1.40017 * 133.40255 * 180.02562 * 4 3 2 6 6 C 1.36185 * 120.07315 * 179.78185 * 5 4 3 7 7 C 1.40170 * 120.52423 * 0.47588 * 6 5 4 8 8 C 1.47600 * 119.93913 * 179.77929 * 7 6 5 9 9 O 1.21580 * 120.00266 * 187.09084 * 8 7 6 10 10 N 1.34783 * 119.99814 * 7.09070 * 8 7 6 11 11 C 1.47425 * 125.64732 * 174.28102 * 10 8 7 12 12 C 1.54903 * 104.83321 * 155.90459 * 11 10 8 13 13 C 1.55162 * 101.57926 * 37.01097 * 12 11 10 14 14 H 1.08995 * 110.71937 * 83.04173 * 13 12 11 15 15 N 1.46508 * 110.71839 * 206.13430 * 13 12 11 16 16 C 1.36934 * 119.99834 * 205.00154 * 15 13 12 17 17 H 1.08005 * 119.99733 * 359.97438 * 16 15 13 18 18 C 1.38809 * 120.00023 * 180.02562 * 16 15 13 19 19 N 1.31617 * 119.99898 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00021 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47176 * 179.97438 * 20 18 16 22 22 H 1.48502 * 109.47198 * 299.99539 * 20 18 16 23 23 H 1.48493 * 109.47312 * 59.99795 * 20 18 16 24 24 C 1.47015 * 125.65140 * 354.32233 * 10 8 7 25 25 C 1.39373 * 120.12287 * 359.50208 * 7 6 5 26 26 C 1.38414 * 119.57511 * 0.25586 * 25 7 6 27 27 N 1.35845 * 124.92542 * 179.97438 * 2 1 3 28 28 H 0.96998 * 126.37183 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.47513 * 270.02008 * 1 2 3 30 30 H 1.09000 * 109.47267 * 30.02403 * 1 2 3 31 31 H 1.08999 * 109.47238 * 150.01968 * 1 2 3 32 32 H 1.07994 * 119.96281 * 359.97438 * 5 4 3 33 33 H 1.08009 * 119.73599 * 180.25747 * 6 5 4 34 34 H 1.09001 * 110.36795 * 37.07060 * 11 10 8 35 35 H 1.09003 * 110.45949 * 274.79473 * 11 10 8 36 36 H 1.08996 * 111.00762 * 278.93644 * 12 11 10 37 37 H 1.09000 * 111.00696 * 155.08195 * 12 11 10 38 38 H 0.96995 * 119.99584 * 24.99279 * 15 13 12 39 39 H 0.97000 * 120.00341 * 0.02562 * 19 18 16 40 40 H 1.09000 * 109.88397 * 61.60336 * 24 10 8 41 41 H 1.09007 * 109.88334 * 300.43933 * 24 10 8 42 42 H 1.08002 * 120.21179 * 180.23078 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2525 1.0677 0.0000 4 6 3.5605 0.7119 0.0006 5 6 4.7559 1.4410 0.0013 6 6 5.9522 0.7902 0.0062 7 6 6.0006 -0.6107 0.0006 8 6 7.3043 -1.3027 0.0012 9 8 7.3517 -2.5101 -0.1336 10 7 8.4422 -0.5961 0.1511 11 6 9.7951 -1.1653 0.2890 12 6 10.7488 -0.0407 -0.1856 13 6 10.0338 1.2243 0.3586 14 1 10.2880 1.3905 1.4054 15 7 10.3735 2.3991 -0.4482 16 6 10.2997 3.6513 0.1010 17 1 9.9908 3.7729 1.1288 18 6 10.6210 4.7645 -0.6635 19 7 10.9969 4.6163 -1.9161 20 14 10.5198 6.4728 0.0854 21 1 10.9115 7.4826 -0.9304 22 1 9.1286 6.7350 0.5339 23 1 11.4392 6.5587 1.2483 24 6 8.5398 0.8698 0.2050 25 6 4.8199 -1.3513 0.0004 26 6 3.6015 -0.6946 0.0003 27 7 2.2847 -1.1138 0.0005 28 1 1.9737 -2.0325 0.0013 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5135 32 1 4.7292 2.5206 0.0010 33 1 6.8709 1.3580 0.0110 34 1 9.9025 -2.0460 -0.3442 35 1 9.9971 -1.4200 1.3294 36 1 10.8127 -0.0158 -1.2734 37 1 11.7373 -0.1528 0.2597 38 1 10.6506 2.2898 -1.3712 39 1 11.0492 3.7293 -2.3052 40 1 7.9794 1.2475 1.0603 41 1 8.1493 1.3015 -0.7166 42 1 4.8556 -2.4308 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970348447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:42 Heat of formation + Delta-G solvation = 76.482147 kcal Electronic energy + Delta-G solvation = -25414.139741 eV Core-core repulsion = 21782.026333 eV Total energy + Delta-G solvation = -3632.113408 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.34595 -40.14466 -37.60572 -36.91956 -34.42657 -33.36073 -32.15144 -31.37094 -30.19941 -29.97314 -27.86849 -27.37462 -24.45239 -23.26979 -22.66603 -21.88868 -21.23488 -20.43355 -19.67185 -18.21463 -17.59869 -17.49863 -16.25610 -15.89732 -15.74740 -15.41645 -14.80279 -14.43513 -14.25342 -14.04320 -13.80745 -13.71055 -13.42721 -13.35615 -13.28991 -12.98914 -12.78317 -12.42822 -12.05344 -11.70959 -11.60359 -11.41078 -10.88595 -10.86399 -10.74418 -10.49277 -10.37720 -10.15328 -10.03511 -9.87122 -9.26829 -9.02220 -8.54773 -8.51722 -8.17705 -7.20795 -6.20154 -3.23685 0.52790 1.36050 2.32741 2.54729 3.09800 3.16221 3.49032 3.51360 3.69053 3.86167 3.88841 4.36215 4.53296 4.62544 4.81006 4.92115 4.99329 5.03017 5.07238 5.17094 5.22405 5.25398 5.26573 5.43972 5.49089 5.54497 5.58990 5.69698 5.85070 5.94395 5.98698 6.04363 6.17194 6.19317 6.31892 6.35437 6.38416 6.47517 6.68181 6.72461 7.06464 7.65305 7.65991 7.71539 8.26244 8.65072 9.07779 9.94652 10.07492 11.27325 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.012808 B = 0.003594 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.534232 B = 7788.456968 C = 9729.270151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.285 3.715 3 N -0.494 5.494 4 C 0.072 3.928 5 C -0.071 4.071 6 C -0.132 4.132 7 C -0.113 4.113 8 C 0.575 3.425 9 O -0.553 6.553 10 N -0.605 5.605 11 C 0.110 3.890 12 C -0.144 4.144 13 C 0.175 3.825 14 H 0.072 0.928 15 N -0.724 5.724 16 C -0.343 4.343 17 H 0.068 0.932 18 C -0.038 4.038 19 N -0.938 5.938 20 Si 1.079 2.921 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.294 1.294 24 C 0.061 3.939 25 C -0.048 4.048 26 C 0.030 3.970 27 N -0.597 5.597 28 H 0.422 0.578 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.137 0.863 33 H 0.178 0.822 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.370 0.630 39 H 0.256 0.744 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.624 -12.711 5.090 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.019 3.981 3 N -0.216 5.216 4 C -0.047 4.047 5 C -0.091 4.091 6 C -0.152 4.152 7 C -0.117 4.117 8 C 0.365 3.635 9 O -0.434 6.434 10 N -0.338 5.338 11 C -0.012 4.012 12 C -0.183 4.183 13 C 0.063 3.937 14 H 0.090 0.910 15 N -0.365 5.365 16 C -0.474 4.474 17 H 0.086 0.914 18 C -0.236 4.236 19 N -0.582 5.582 20 Si 0.909 3.091 21 H -0.210 1.210 22 H -0.220 1.220 23 H -0.222 1.222 24 C -0.064 4.064 25 C -0.070 4.070 26 C -0.079 4.079 27 N -0.209 5.209 28 H 0.261 0.739 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.155 0.845 33 H 0.194 0.806 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.204 0.796 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.719 -10.778 4.919 20.491 hybrid contribution -0.196 -2.979 0.057 2.986 sum -16.916 -13.756 4.977 22.364 Atomic orbital electron populations 1.20393 0.84076 1.04799 1.04316 1.23677 0.95766 0.81066 0.97632 1.70415 1.01025 1.27469 1.22665 1.19311 0.92078 0.90261 1.03091 1.20081 0.88606 1.00369 1.00020 1.22576 1.00783 0.93867 0.97931 1.19503 0.92263 0.93741 1.06234 1.17771 0.82993 0.86102 0.76608 1.90731 1.87194 1.13978 1.51453 1.48346 1.06285 1.08316 1.70856 1.22199 0.80805 0.97215 1.01015 1.23132 0.98456 0.94869 1.01818 1.21204 0.89515 0.86731 0.96273 0.90958 1.42404 1.80555 1.01613 1.11884 1.20056 1.44652 0.84733 0.97936 0.91381 1.25804 0.99088 1.02773 0.95984 1.70897 1.49517 1.24717 1.13093 0.83264 0.75967 0.75244 0.74640 1.21012 1.22011 1.22157 1.23773 1.02599 0.78334 1.01726 1.19906 0.87797 0.99894 0.99377 1.18662 0.85232 0.95374 1.08635 1.42968 1.04754 1.09850 1.63372 0.73874 0.89253 0.88371 0.90156 0.84484 0.80570 0.90626 0.91406 0.90711 0.89882 0.79554 0.93251 0.90843 0.89758 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.51 36.01 0.38 -0.02 16 2 C 0.29 2.91 8.07 -154.91 -1.25 1.66 16 3 N -0.49 -6.98 11.26 -8.19 -0.09 -7.07 16 4 C 0.07 1.08 7.23 -84.62 -0.61 0.46 16 5 C -0.07 -1.06 10.03 -39.65 -0.40 -1.46 16 6 C -0.13 -1.99 8.52 -39.59 -0.34 -2.33 16 7 C -0.11 -1.75 5.88 -104.93 -0.62 -2.37 16 8 C 0.58 9.77 7.80 -12.44 -0.10 9.67 16 9 O -0.55 -10.55 16.58 5.30 0.09 -10.46 16 10 N -0.61 -9.68 3.33 -178.02 -0.59 -10.28 16 11 C 0.11 1.58 6.93 -2.53 -0.02 1.57 16 12 C -0.14 -2.16 6.71 -24.58 -0.17 -2.32 16 13 C 0.18 3.14 3.61 -66.09 -0.24 2.90 16 14 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 15 N -0.72 -16.50 5.15 -51.65 -0.27 -16.77 16 16 C -0.34 -8.92 9.96 -15.06 -0.15 -9.07 16 17 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 18 C -0.04 -1.05 5.50 -17.43 -0.10 -1.14 16 19 N -0.94 -27.74 13.70 55.49 0.76 -26.98 16 20 Si 1.08 24.75 29.92 -169.99 -5.09 19.66 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.06 1.00 4.61 -3.07 -0.01 0.99 16 25 C -0.05 -0.67 9.61 -39.09 -0.38 -1.05 16 26 C 0.03 0.39 7.29 -84.00 -0.61 -0.22 16 27 N -0.60 -5.75 6.23 -8.04 -0.05 -5.80 16 28 H 0.42 2.45 8.96 -40.82 -0.37 2.08 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.18 2.71 2.68 -60.58 -0.16 2.54 16 34 H 0.08 1.08 7.99 -51.93 -0.41 0.67 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.17 8.01 -51.93 -0.42 0.75 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.37 8.83 6.59 -40.82 -0.27 8.56 16 39 H 0.26 7.43 6.77 -40.82 -0.28 7.15 16 40 H 0.07 1.15 6.73 -51.93 -0.35 0.81 16 41 H 0.08 1.50 6.62 -51.92 -0.34 1.16 16 42 H 0.13 1.73 7.65 -52.49 -0.40 1.33 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -34.11 346.44 -9.78 -43.89 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -5.16 Total: 11.29 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -4.60 Total: -2.71 kcal Atomic # 7 Polarization: -66.65 SS G_CDS: -0.24 Total: -66.89 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.09 Total: 19.66 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.11 -9.78 -43.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970348447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.373 kcal (2) G-P(sol) polarization free energy of solvation -34.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds