Wall clock time and date at job start Tue Mar 31 2020 10:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30220 * 124.92295 * 2 1 4 4 C 1.35556 * 109.70576 * 179.97438 * 3 2 1 5 5 C 1.40017 * 133.40255 * 180.02562 * 4 3 2 6 6 C 1.36185 * 120.07315 * 179.78185 * 5 4 3 7 7 C 1.40170 * 120.52423 * 0.47588 * 6 5 4 8 8 C 1.47600 * 119.93913 * 179.77929 * 7 6 5 9 9 O 1.21580 * 120.00266 * 187.09084 * 8 7 6 10 10 N 1.34783 * 119.99814 * 7.09070 * 8 7 6 11 11 C 1.47425 * 125.64732 * 174.28102 * 10 8 7 12 12 C 1.54903 * 104.83321 * 155.90459 * 11 10 8 13 13 C 1.55162 * 101.57926 * 37.01097 * 12 11 10 14 14 H 1.08995 * 110.71937 * 83.04173 * 13 12 11 15 15 N 1.46508 * 110.71839 * 206.13430 * 13 12 11 16 16 C 1.36934 * 119.99834 * 205.00154 * 15 13 12 17 17 H 1.08005 * 119.99733 * 359.97438 * 16 15 13 18 18 C 1.38809 * 120.00023 * 180.02562 * 16 15 13 19 19 N 1.31617 * 119.99898 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00021 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47176 * 179.97438 * 20 18 16 22 22 H 1.48502 * 109.47198 * 299.99539 * 20 18 16 23 23 H 1.48493 * 109.47312 * 59.99795 * 20 18 16 24 24 C 1.47015 * 125.65140 * 354.32233 * 10 8 7 25 25 C 1.39373 * 120.12287 * 359.50208 * 7 6 5 26 26 C 1.38414 * 119.57511 * 0.25586 * 25 7 6 27 27 N 1.35845 * 124.92542 * 179.97438 * 2 1 3 28 28 H 0.96998 * 126.37183 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.47513 * 270.02008 * 1 2 3 30 30 H 1.09000 * 109.47267 * 30.02403 * 1 2 3 31 31 H 1.08999 * 109.47238 * 150.01968 * 1 2 3 32 32 H 1.07994 * 119.96281 * 359.97438 * 5 4 3 33 33 H 1.08009 * 119.73599 * 180.25747 * 6 5 4 34 34 H 1.09001 * 110.36795 * 37.07060 * 11 10 8 35 35 H 1.09003 * 110.45949 * 274.79473 * 11 10 8 36 36 H 1.08996 * 111.00762 * 278.93644 * 12 11 10 37 37 H 1.09000 * 111.00696 * 155.08195 * 12 11 10 38 38 H 0.96995 * 119.99584 * 24.99279 * 15 13 12 39 39 H 0.97000 * 120.00341 * 0.02562 * 19 18 16 40 40 H 1.09000 * 109.88397 * 61.60336 * 24 10 8 41 41 H 1.09007 * 109.88334 * 300.43933 * 24 10 8 42 42 H 1.08002 * 120.21179 * 180.23078 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2525 1.0677 0.0000 4 6 3.5605 0.7119 0.0006 5 6 4.7559 1.4410 0.0013 6 6 5.9522 0.7902 0.0062 7 6 6.0006 -0.6107 0.0006 8 6 7.3043 -1.3027 0.0012 9 8 7.3517 -2.5101 -0.1336 10 7 8.4422 -0.5961 0.1511 11 6 9.7951 -1.1653 0.2890 12 6 10.7488 -0.0407 -0.1856 13 6 10.0338 1.2243 0.3586 14 1 10.2880 1.3905 1.4054 15 7 10.3735 2.3991 -0.4482 16 6 10.2997 3.6513 0.1010 17 1 9.9908 3.7729 1.1288 18 6 10.6210 4.7645 -0.6635 19 7 10.9969 4.6163 -1.9161 20 14 10.5198 6.4728 0.0854 21 1 10.9115 7.4826 -0.9304 22 1 9.1286 6.7350 0.5339 23 1 11.4392 6.5587 1.2483 24 6 8.5398 0.8698 0.2050 25 6 4.8199 -1.3513 0.0004 26 6 3.6015 -0.6946 0.0003 27 7 2.2847 -1.1138 0.0005 28 1 1.9737 -2.0325 0.0013 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5135 32 1 4.7292 2.5206 0.0010 33 1 6.8709 1.3580 0.0110 34 1 9.9025 -2.0460 -0.3442 35 1 9.9971 -1.4200 1.3294 36 1 10.8127 -0.0158 -1.2734 37 1 11.7373 -0.1528 0.2597 38 1 10.6506 2.2898 -1.3712 39 1 11.0492 3.7293 -2.3052 40 1 7.9794 1.2475 1.0603 41 1 8.1493 1.3015 -0.7166 42 1 4.8556 -2.4308 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970348447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:41 Heat of formation + Delta-G solvation = 53.720316 kcal Electronic energy + Delta-G solvation = -25415.126768 eV Core-core repulsion = 21782.026333 eV Total energy + Delta-G solvation = -3633.100435 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.30767 -41.43547 -38.95836 -38.09408 -36.21201 -34.33483 -33.47698 -32.60205 -31.26813 -31.23862 -29.22943 -28.52475 -26.02388 -24.86611 -23.72945 -23.08638 -22.22138 -21.75715 -20.88423 -19.44696 -19.33276 -18.53908 -17.60734 -17.22699 -16.69800 -16.57443 -16.37968 -15.85839 -15.60305 -15.41700 -15.10125 -14.94344 -14.79470 -14.30546 -14.21895 -13.97181 -13.73047 -13.48187 -13.20054 -12.94028 -12.85344 -12.62682 -12.57698 -12.51964 -11.87985 -11.86590 -11.84450 -11.75108 -11.33636 -11.18549 -11.11318 -10.85621 -9.82666 -9.57022 -9.27273 -9.14547 -8.33854 -5.31187 -0.54817 0.24380 1.32561 1.62969 1.64848 1.72975 1.88562 1.93352 1.98610 2.73304 2.75175 3.04176 3.27014 3.40896 3.48912 3.69582 3.77461 3.81201 3.99215 4.08754 4.15293 4.17884 4.23508 4.26370 4.42592 4.48367 4.59000 4.66009 4.70147 4.74667 4.89778 4.91017 5.03849 5.05652 5.06898 5.17733 5.26055 5.27651 5.33680 5.63106 5.66370 6.34203 6.34403 6.54145 6.73952 6.94849 7.09880 7.99384 8.10464 9.17419 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.012808 B = 0.003594 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.534232 B = 7788.456968 C = 9729.270151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.304 3.696 3 N -0.539 5.539 4 C 0.056 3.944 5 C -0.087 4.087 6 C -0.131 4.131 7 C -0.135 4.135 8 C 0.575 3.425 9 O -0.578 6.578 10 N -0.606 5.606 11 C 0.112 3.888 12 C -0.131 4.131 13 C 0.167 3.833 14 H 0.077 0.923 15 N -0.735 5.735 16 C -0.331 4.331 17 H 0.075 0.925 18 C -0.099 4.099 19 N -0.976 5.976 20 Si 1.122 2.878 21 H -0.299 1.299 22 H -0.277 1.277 23 H -0.277 1.277 24 C 0.077 3.923 25 C -0.038 4.038 26 C 0.023 3.977 27 N -0.581 5.581 28 H 0.442 0.558 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.138 0.862 33 H 0.170 0.830 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.362 0.638 39 H 0.246 0.754 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.696 -13.970 6.443 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.037 3.963 3 N -0.262 5.262 4 C -0.063 4.063 5 C -0.106 4.106 6 C -0.151 4.151 7 C -0.140 4.140 8 C 0.366 3.634 9 O -0.460 6.460 10 N -0.337 5.337 11 C -0.010 4.010 12 C -0.170 4.170 13 C 0.057 3.943 14 H 0.095 0.905 15 N -0.376 5.376 16 C -0.462 4.462 17 H 0.093 0.907 18 C -0.291 4.291 19 N -0.624 5.624 20 Si 0.948 3.052 21 H -0.225 1.225 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.048 4.048 25 C -0.059 4.059 26 C -0.087 4.087 27 N -0.195 5.195 28 H 0.285 0.715 29 H 0.128 0.872 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.156 0.844 33 H 0.187 0.813 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.195 0.805 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.820 -12.114 6.318 23.256 hybrid contribution 0.274 -2.695 -0.328 2.729 sum -18.546 -14.809 5.989 24.477 Atomic orbital electron populations 1.20690 0.80159 1.06519 1.06071 1.24676 0.97567 0.80155 0.93901 1.70440 1.00841 1.29503 1.25366 1.19554 0.92637 0.91209 1.02914 1.20137 0.88958 1.00587 1.00955 1.22408 1.00558 0.93782 0.98358 1.19455 0.92212 0.93852 1.08488 1.17966 0.83523 0.85855 0.76052 1.90707 1.87563 1.14840 1.52870 1.48363 1.06881 1.07956 1.70541 1.22313 0.79599 0.96804 1.02307 1.23036 0.99298 0.93338 1.01325 1.21411 0.90637 0.86338 0.95908 0.90528 1.42536 1.80921 1.02188 1.11951 1.20395 1.41938 0.85914 0.97969 0.90739 1.27053 0.99733 1.06378 0.95932 1.70995 1.52732 1.24117 1.14557 0.82687 0.77015 0.71381 0.74130 1.22496 1.20293 1.20337 1.23435 1.01265 0.78780 1.01366 1.19987 0.87625 1.00285 0.98025 1.18649 0.86462 0.94859 1.08753 1.42968 1.03223 1.11050 1.62270 0.71478 0.87248 0.88158 0.86904 0.84411 0.81325 0.90269 0.89373 0.91548 0.88035 0.80495 0.94389 0.90012 0.91335 0.83721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.51 71.24 0.75 0.26 16 2 C 0.30 5.43 8.07 137.95 1.11 6.54 16 3 N -0.54 -14.66 11.26 -179.82 -2.03 -16.69 16 4 C 0.06 1.68 7.23 39.60 0.29 1.96 16 5 C -0.09 -2.65 10.03 22.22 0.22 -2.43 16 6 C -0.13 -4.05 8.52 22.26 0.19 -3.86 16 7 C -0.14 -4.20 5.88 -20.06 -0.12 -4.32 16 8 C 0.57 19.36 7.80 86.71 0.68 20.04 16 9 O -0.58 -21.69 16.58 -3.97 -0.07 -21.76 16 10 N -0.61 -19.05 3.33 -835.39 -2.78 -21.83 16 11 C 0.11 3.05 6.93 86.85 0.60 3.65 16 12 C -0.13 -3.80 6.71 31.99 0.21 -3.59 16 13 C 0.17 5.91 3.61 46.18 0.17 6.08 16 14 H 0.08 2.66 8.09 -2.39 -0.02 2.65 16 15 N -0.74 -33.82 5.15 -317.32 -1.63 -35.45 16 16 C -0.33 -17.20 9.96 84.03 0.84 -16.36 16 17 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 18 C -0.10 -5.49 5.50 84.86 0.47 -5.03 16 19 N -0.98 -59.13 13.70 21.65 0.30 -58.83 16 20 Si 1.12 50.01 29.92 68.60 2.05 52.07 16 21 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 23 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 24 C 0.08 2.52 4.61 86.73 0.40 2.92 16 25 C -0.04 -1.02 9.61 22.58 0.22 -0.81 16 26 C 0.02 0.57 7.29 38.79 0.28 0.86 16 27 N -0.58 -9.71 6.23 -179.34 -1.12 -10.83 16 28 H 0.44 3.64 8.96 -92.71 -0.83 2.81 16 29 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 33 H 0.17 5.34 2.68 -10.52 -0.03 5.31 16 34 H 0.08 2.15 7.99 -2.39 -0.02 2.13 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.07 2.06 8.01 -2.39 -0.02 2.04 16 37 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.36 17.74 6.59 -92.71 -0.61 17.13 16 39 H 0.25 14.76 6.77 -92.71 -0.63 14.13 16 40 H 0.08 2.56 6.73 -2.39 -0.02 2.55 16 41 H 0.07 2.51 6.62 -2.38 -0.02 2.49 16 42 H 0.15 3.55 7.65 -2.91 -0.02 3.53 16 Total: -1.00 -74.74 346.44 0.80 -73.94 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: -0.23 Total: 33.45 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 6.31 Total: 5.93 kcal Atomic # 7 Polarization: -136.37 SS G_CDS: -7.26 Total: -143.63 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.07 Total: -21.76 kcal Atomic # 14 Polarization: 50.01 SS G_CDS: 2.05 Total: 52.07 kcal Total: -74.74 0.80 -73.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970348447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.662 kcal (2) G-P(sol) polarization free energy of solvation -74.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds