Wall clock time and date at job start Tue Mar 31 2020 10:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30184 * 125.08716 * 2 1 4 4 C 1.34898 * 109.73042 * 179.76554 * 3 2 1 5 5 C 1.46282 * 126.49408 * 180.02562 * 4 3 2 6 6 O 1.21773 * 120.00058 * 180.42321 * 5 4 3 7 7 N 1.34785 * 120.00257 * 0.42083 * 5 4 3 8 8 C 1.46494 * 120.00006 * 180.02562 * 7 5 4 9 9 H 1.09001 * 110.88644 * 328.88111 * 8 7 5 10 10 C 1.55161 * 111.00432 * 204.99898 * 8 7 5 11 11 C 1.54320 * 102.94339 * 277.43014 * 10 8 7 12 12 N 1.47027 * 107.27198 * 337.80340 * 11 10 8 13 13 C 1.36933 * 125.64665 * 178.98294 * 12 11 10 14 14 H 1.08003 * 119.99404 * 179.97438 * 13 12 11 15 15 C 1.38808 * 120.00442 * 359.97438 * 13 12 11 16 16 N 1.31618 * 119.99769 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00064 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47251 * 89.99578 * 17 15 13 19 19 H 1.48504 * 109.46611 * 209.99995 * 17 15 13 20 20 H 1.48495 * 109.47132 * 329.99470 * 17 15 13 21 21 C 1.47430 * 108.70102 * 358.94558 * 12 11 10 22 22 C 1.40145 * 107.00495 * 0.36563 * 4 3 2 23 23 C 1.40175 * 133.57880 * 179.97438 * 22 4 3 24 24 C 1.36329 * 119.20162 * 179.70167 * 23 22 4 25 25 C 1.40394 * 119.56215 * 0.02562 * 24 23 22 26 26 C 1.35025 * 120.43698 * 359.97343 * 25 24 23 27 27 N 1.36246 * 125.08843 * 180.02562 * 2 1 3 28 28 H 1.08990 * 109.47218 * 269.99928 * 1 2 3 29 29 H 1.09005 * 109.46972 * 30.00024 * 1 2 3 30 30 H 1.09004 * 109.46891 * 149.99640 * 1 2 3 31 31 H 0.97000 * 119.99766 * 0.02562 * 7 5 4 32 32 H 1.09003 * 110.71621 * 35.79328 * 10 8 7 33 33 H 1.08996 * 110.71748 * 158.88686 * 10 8 7 34 34 H 1.08993 * 109.88493 * 97.21856 * 11 10 8 35 35 H 1.09000 * 109.88184 * 218.38890 * 11 10 8 36 36 H 0.97004 * 119.99980 * 180.02562 * 16 15 13 37 37 H 1.09000 * 110.36428 * 265.28790 * 21 12 11 38 38 H 1.08992 * 110.36682 * 142.96602 * 21 12 11 39 39 H 1.08006 * 120.40170 * 359.65305 * 23 22 4 40 40 H 1.08002 * 120.22066 * 180.02562 * 24 23 22 41 41 H 1.07997 * 119.78434 * 180.02562 * 25 24 23 42 42 H 1.08005 * 119.70321 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2554 1.0653 0.0000 4 6 3.5562 0.7080 0.0052 5 6 4.7065 1.6116 0.0074 6 8 5.8368 1.1584 0.0044 7 7 4.5155 2.9459 0.0128 8 6 5.6676 3.8507 0.0145 9 1 6.5125 3.4031 0.5378 10 6 5.2950 5.2244 0.6324 11 6 4.6389 5.9685 -0.5496 12 7 5.1201 5.3346 -1.7858 13 6 4.7575 5.6889 -3.0578 14 1 5.1692 5.1590 -3.9040 15 6 3.8608 6.7291 -3.2597 16 7 3.3587 7.3746 -2.2283 17 14 3.3668 7.2129 -4.9950 18 1 2.1714 6.4331 -5.4049 19 1 3.0489 8.6630 -5.0329 20 1 4.4874 6.9273 -5.9265 21 6 6.0584 4.2548 -1.4290 22 6 3.5965 -0.6928 0.0001 23 6 4.6393 -1.6295 0.0013 24 6 4.3390 -2.9593 0.0011 25 6 2.9952 -3.3659 -0.0009 26 6 2.0033 -2.4497 -0.0021 27 7 2.2902 -1.1149 -0.0005 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 3.6152 3.3069 0.0155 32 1 4.5860 5.0994 1.4508 33 1 6.1876 5.7484 0.9739 34 1 3.5543 5.8815 -0.4864 35 1 4.9301 7.0188 -0.5340 36 1 2.7318 8.1012 -2.3693 37 1 7.0850 4.6201 -1.4559 38 1 5.9380 3.4088 -2.1055 39 1 5.6685 -1.3017 0.0016 40 1 5.1295 -3.6952 0.0025 41 1 2.7532 -4.4184 -0.0007 42 1 0.9737 -2.7757 -0.0032 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015265930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:44 Heat of formation + Delta-G solvation = 78.637765 kcal Electronic energy + Delta-G solvation = -25797.861897 eV Core-core repulsion = 22165.841964 eV Total energy + Delta-G solvation = -3632.019934 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.98979 -39.21681 -37.69031 -37.00827 -33.71037 -33.56440 -31.78408 -31.64930 -30.24577 -29.08355 -27.56733 -26.64238 -24.51491 -24.06596 -23.49273 -21.32731 -20.52099 -19.96420 -19.60283 -17.95480 -17.09801 -16.77697 -16.33898 -16.22890 -15.77872 -15.60193 -14.70076 -14.55375 -14.32790 -14.05713 -13.68214 -13.51311 -13.39050 -13.04620 -12.81699 -12.43615 -12.36447 -11.91035 -11.85026 -11.79351 -11.69998 -10.90105 -10.81570 -10.79924 -10.59964 -10.52201 -10.26853 -10.05726 -9.84857 -9.61431 -9.58398 -9.54237 -8.62346 -8.40830 -7.58019 -6.72106 -5.63152 -2.95163 0.46375 0.89971 2.27580 2.35342 3.07969 3.45652 3.50500 3.52422 3.62901 3.83895 4.11336 4.19918 4.40833 4.54167 4.57805 4.71370 4.82477 5.13005 5.19198 5.28255 5.39032 5.45550 5.55816 5.57132 5.58495 5.65678 5.82712 5.88802 5.95933 6.00189 6.23923 6.32771 6.34282 6.49489 6.60803 6.65419 6.79241 6.91092 7.18059 7.58711 7.63576 7.67265 7.88888 8.13189 8.34187 8.69345 9.30946 9.91064 10.57380 11.48889 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.015983 B = 0.003562 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.387922 B = 7857.988488 C = 8578.773884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.166 3.834 3 N -0.409 5.409 4 C -0.048 4.048 5 C 0.604 3.396 6 O -0.557 6.557 7 N -0.687 5.687 8 C 0.128 3.872 9 H 0.091 0.909 10 C -0.154 4.154 11 C 0.176 3.824 12 N -0.604 5.604 13 C -0.222 4.222 14 H 0.076 0.924 15 C -0.009 4.009 16 N -0.923 5.923 17 Si 0.910 3.090 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.126 3.874 22 C 0.070 3.930 23 C -0.062 4.062 24 C -0.122 4.122 25 C -0.133 4.133 26 C 0.048 3.952 27 N -0.363 5.363 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.411 0.589 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.251 0.749 37 H 0.028 0.972 38 H 0.042 0.958 39 H 0.160 0.840 40 H 0.140 0.860 41 H 0.150 0.850 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.387 -21.780 8.565 23.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.091 4.091 3 N -0.124 5.124 4 C -0.183 4.183 5 C 0.390 3.610 6 O -0.437 6.437 7 N -0.335 5.335 8 C 0.022 3.978 9 H 0.109 0.891 10 C -0.192 4.192 11 C 0.051 3.949 12 N -0.330 5.330 13 C -0.351 4.351 14 H 0.094 0.906 15 C -0.205 4.205 16 N -0.571 5.571 17 Si 0.741 3.259 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.208 1.208 21 C -0.002 4.002 22 C -0.042 4.042 23 C -0.082 4.082 24 C -0.144 4.144 25 C -0.153 4.153 26 C -0.074 4.074 27 N -0.035 5.035 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.246 0.754 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.046 0.954 38 H 0.060 0.940 39 H 0.178 0.822 40 H 0.158 0.842 41 H 0.167 0.833 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.152 -21.010 8.453 23.024 hybrid contribution -0.575 -0.371 -1.017 1.226 sum -4.727 -21.381 7.436 23.126 Atomic orbital electron populations 1.20196 0.83902 1.04413 1.03645 1.23375 0.95721 0.78798 1.11159 1.70097 1.01505 1.27313 1.13499 1.20614 0.91644 0.89630 1.16433 1.16435 0.86220 0.81886 0.76412 1.90759 1.23121 1.76975 1.52809 1.45607 1.10984 1.04632 1.72305 1.22170 0.88184 0.89317 0.98093 0.89109 1.23222 1.01257 0.95056 0.99704 1.21167 0.96978 0.94903 0.81811 1.44471 1.49964 1.36132 1.02463 1.19051 1.20778 1.12708 0.82530 0.90635 1.24758 0.99762 0.98643 0.97338 1.69957 1.34578 1.24979 1.27600 0.86134 0.78365 0.77453 0.83928 1.21744 1.21742 1.20799 1.21945 0.93390 0.91769 0.93056 1.19265 0.83983 0.94329 1.06672 1.20838 0.99231 0.91157 0.96924 1.21195 0.96535 0.95901 1.00724 1.20883 0.92366 0.99856 1.02236 1.21633 1.01451 0.80381 1.03934 1.42874 1.07942 1.06440 1.46204 0.90053 0.88451 0.90901 0.75354 0.91588 0.90955 0.93531 0.93795 0.93894 0.95430 0.94008 0.82234 0.84173 0.83283 0.81667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.32 36.01 0.37 -0.16 16 2 C 0.17 2.19 7.94 -154.57 -1.23 0.96 16 3 N -0.41 -6.87 10.90 -6.74 -0.07 -6.94 16 4 C -0.05 -0.85 7.05 -82.57 -0.58 -1.43 16 5 C 0.60 11.69 7.77 -13.02 -0.10 11.59 16 6 O -0.56 -11.41 15.39 5.12 0.08 -11.34 16 7 N -0.69 -13.38 5.18 -53.15 -0.28 -13.65 16 8 C 0.13 2.50 3.43 -65.78 -0.23 2.28 16 9 H 0.09 1.68 7.54 -51.93 -0.39 1.29 16 10 C -0.15 -2.93 6.55 -24.90 -0.16 -3.10 16 11 C 0.18 4.33 5.36 -3.06 -0.02 4.31 16 12 N -0.60 -15.96 3.39 -170.07 -0.58 -16.53 16 13 C -0.22 -6.43 10.28 -15.06 -0.15 -6.59 16 14 H 0.08 2.15 7.83 -52.48 -0.41 1.73 16 15 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 16 N -0.92 -27.53 10.31 55.49 0.57 -26.96 16 17 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 C 0.13 2.85 6.93 -2.53 -0.02 2.83 16 22 C 0.07 1.03 6.72 -83.99 -0.56 0.47 16 23 C -0.06 -0.76 9.73 -39.54 -0.38 -1.15 16 24 C -0.12 -1.05 10.08 -39.46 -0.40 -1.45 16 25 C -0.13 -0.92 9.98 -39.91 -0.40 -1.31 16 26 C 0.05 0.38 10.77 -16.60 -0.18 0.20 16 27 N -0.36 -4.44 2.94 -57.93 -0.17 -4.61 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.42 7.98 -51.93 -0.41 0.00 16 31 H 0.41 8.19 8.37 -40.82 -0.34 7.85 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 35 H 0.04 1.19 7.51 -51.93 -0.39 0.80 16 36 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.16 2.03 7.17 -52.48 -0.38 1.66 16 40 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 41 H 0.15 0.50 8.06 -52.49 -0.42 0.07 16 42 H 0.17 0.69 7.93 -52.48 -0.42 0.28 16 LS Contribution 352.39 15.07 5.31 5.31 Total: -1.00 -35.42 352.39 -9.94 -45.36 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.64 Total: 4.49 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -4.14 Total: 7.10 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: -0.52 Total: -68.69 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.42 -9.94 -45.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015265930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.999 kcal (2) G-P(sol) polarization free energy of solvation -35.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds