Wall clock time and date at job start Tue Mar 31 2020 10:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30184 * 125.08716 * 2 1 4 4 C 1.34898 * 109.73042 * 179.76554 * 3 2 1 5 5 C 1.46282 * 126.49408 * 180.02562 * 4 3 2 6 6 O 1.21773 * 120.00058 * 180.42321 * 5 4 3 7 7 N 1.34785 * 120.00257 * 0.42083 * 5 4 3 8 8 C 1.46494 * 120.00006 * 180.02562 * 7 5 4 9 9 H 1.09001 * 110.88644 * 328.88111 * 8 7 5 10 10 C 1.55161 * 111.00432 * 204.99898 * 8 7 5 11 11 C 1.54320 * 102.94339 * 277.43014 * 10 8 7 12 12 N 1.47027 * 107.27198 * 337.80340 * 11 10 8 13 13 C 1.36933 * 125.64665 * 178.98294 * 12 11 10 14 14 H 1.08003 * 119.99404 * 179.97438 * 13 12 11 15 15 C 1.38808 * 120.00442 * 359.97438 * 13 12 11 16 16 N 1.31618 * 119.99769 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00064 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47251 * 89.99578 * 17 15 13 19 19 H 1.48504 * 109.46611 * 209.99995 * 17 15 13 20 20 H 1.48495 * 109.47132 * 329.99470 * 17 15 13 21 21 C 1.47430 * 108.70102 * 358.94558 * 12 11 10 22 22 C 1.40145 * 107.00495 * 0.36563 * 4 3 2 23 23 C 1.40175 * 133.57880 * 179.97438 * 22 4 3 24 24 C 1.36329 * 119.20162 * 179.70167 * 23 22 4 25 25 C 1.40394 * 119.56215 * 0.02562 * 24 23 22 26 26 C 1.35025 * 120.43698 * 359.97343 * 25 24 23 27 27 N 1.36246 * 125.08843 * 180.02562 * 2 1 3 28 28 H 1.08990 * 109.47218 * 269.99928 * 1 2 3 29 29 H 1.09005 * 109.46972 * 30.00024 * 1 2 3 30 30 H 1.09004 * 109.46891 * 149.99640 * 1 2 3 31 31 H 0.97000 * 119.99766 * 0.02562 * 7 5 4 32 32 H 1.09003 * 110.71621 * 35.79328 * 10 8 7 33 33 H 1.08996 * 110.71748 * 158.88686 * 10 8 7 34 34 H 1.08993 * 109.88493 * 97.21856 * 11 10 8 35 35 H 1.09000 * 109.88184 * 218.38890 * 11 10 8 36 36 H 0.97004 * 119.99980 * 180.02562 * 16 15 13 37 37 H 1.09000 * 110.36428 * 265.28790 * 21 12 11 38 38 H 1.08992 * 110.36682 * 142.96602 * 21 12 11 39 39 H 1.08006 * 120.40170 * 359.65305 * 23 22 4 40 40 H 1.08002 * 120.22066 * 180.02562 * 24 23 22 41 41 H 1.07997 * 119.78434 * 180.02562 * 25 24 23 42 42 H 1.08005 * 119.70321 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2554 1.0653 0.0000 4 6 3.5562 0.7080 0.0052 5 6 4.7065 1.6116 0.0074 6 8 5.8368 1.1584 0.0044 7 7 4.5155 2.9459 0.0128 8 6 5.6676 3.8507 0.0145 9 1 6.5125 3.4031 0.5378 10 6 5.2950 5.2244 0.6324 11 6 4.6389 5.9685 -0.5496 12 7 5.1201 5.3346 -1.7858 13 6 4.7575 5.6889 -3.0578 14 1 5.1692 5.1590 -3.9040 15 6 3.8608 6.7291 -3.2597 16 7 3.3587 7.3746 -2.2283 17 14 3.3668 7.2129 -4.9950 18 1 2.1714 6.4331 -5.4049 19 1 3.0489 8.6630 -5.0329 20 1 4.4874 6.9273 -5.9265 21 6 6.0584 4.2548 -1.4290 22 6 3.5965 -0.6928 0.0001 23 6 4.6393 -1.6295 0.0013 24 6 4.3390 -2.9593 0.0011 25 6 2.9952 -3.3659 -0.0009 26 6 2.0033 -2.4497 -0.0021 27 7 2.2902 -1.1149 -0.0005 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 3.6152 3.3069 0.0155 32 1 4.5860 5.0994 1.4508 33 1 6.1876 5.7484 0.9739 34 1 3.5543 5.8815 -0.4864 35 1 4.9301 7.0188 -0.5340 36 1 2.7318 8.1012 -2.3693 37 1 7.0850 4.6201 -1.4559 38 1 5.9380 3.4088 -2.1055 39 1 5.6685 -1.3017 0.0016 40 1 5.1295 -3.6952 0.0025 41 1 2.7532 -4.4184 -0.0007 42 1 0.9737 -2.7757 -0.0032 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015265930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:43 Heat of formation + Delta-G solvation = 54.891295 kcal Electronic energy + Delta-G solvation = -25798.891621 eV Core-core repulsion = 22165.841964 eV Total energy + Delta-G solvation = -3633.049658 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.92202 -40.72751 -38.83542 -38.45720 -35.38171 -34.63576 -33.57042 -32.55761 -31.23450 -30.83712 -29.18258 -27.82405 -26.45805 -24.95061 -24.64004 -22.19926 -22.10132 -21.73716 -21.16990 -19.19583 -18.75508 -17.93629 -17.32853 -17.28721 -17.17873 -16.64900 -16.44652 -15.88449 -15.69188 -15.47031 -15.40476 -14.77279 -14.46236 -14.04351 -14.03306 -13.85679 -13.57255 -13.45740 -13.10086 -12.92214 -12.80642 -12.69694 -12.60430 -12.31387 -12.12622 -12.02516 -11.83686 -11.70377 -11.65412 -11.56155 -11.05938 -10.73040 -10.40499 -10.07948 -8.87593 -8.50451 -7.85153 -5.19892 -0.37234 0.06900 1.21111 1.42206 1.43285 1.45761 1.54441 2.23687 2.30030 2.48585 2.58217 3.21954 3.33214 3.42619 3.66331 3.68377 3.74971 3.80030 3.92935 4.07142 4.15482 4.17012 4.30592 4.52320 4.65559 4.70074 4.72158 4.73771 4.82621 4.87242 4.96807 4.99288 5.01212 5.12831 5.24104 5.29894 5.41936 5.52455 5.59265 5.66566 5.74925 6.11203 6.19115 6.45913 6.74532 7.10679 7.23288 7.76077 8.41197 9.25092 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.015983 B = 0.003562 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.387922 B = 7857.988488 C = 8578.773884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.162 3.838 3 N -0.449 5.449 4 C -0.120 4.120 5 C 0.602 3.398 6 O -0.581 6.581 7 N -0.693 5.693 8 C 0.139 3.861 9 H 0.107 0.893 10 C -0.133 4.133 11 C 0.186 3.814 12 N -0.621 5.621 13 C -0.245 4.245 14 H 0.072 0.928 15 C -0.061 4.061 16 N -0.946 5.946 17 Si 0.978 3.022 18 H -0.287 1.287 19 H -0.289 1.289 20 H -0.272 1.272 21 C 0.124 3.876 22 C 0.076 3.924 23 C -0.118 4.118 24 C -0.079 4.079 25 C -0.130 4.130 26 C 0.050 3.950 27 N -0.364 5.364 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.406 0.594 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.014 0.986 35 H 0.014 0.986 36 H 0.248 0.752 37 H 0.039 0.961 38 H 0.023 0.977 39 H 0.141 0.859 40 H 0.175 0.825 41 H 0.201 0.799 42 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.774 -25.698 8.830 27.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.096 4.096 3 N -0.165 5.165 4 C -0.251 4.251 5 C 0.391 3.609 6 O -0.463 6.463 7 N -0.341 5.341 8 C 0.034 3.966 9 H 0.125 0.875 10 C -0.172 4.172 11 C 0.061 3.939 12 N -0.348 5.348 13 C -0.374 4.374 14 H 0.090 0.910 15 C -0.254 4.254 16 N -0.595 5.595 17 Si 0.806 3.194 18 H -0.214 1.214 19 H -0.215 1.215 20 H -0.197 1.197 21 C -0.002 4.002 22 C -0.038 4.038 23 C -0.138 4.138 24 C -0.100 4.100 25 C -0.150 4.150 26 C -0.071 4.071 27 N -0.035 5.035 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.240 0.760 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.033 0.967 35 H 0.032 0.968 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.041 0.959 39 H 0.159 0.841 40 H 0.193 0.807 41 H 0.218 0.782 42 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -5.517 -24.933 8.728 26.986 hybrid contribution -0.199 0.513 -1.105 1.234 sum -5.716 -24.420 7.623 26.213 Atomic orbital electron populations 1.20406 0.80590 1.05632 1.05198 1.24187 0.97247 0.78404 1.09729 1.69954 1.01733 1.29737 1.15031 1.20320 0.91463 0.90780 1.22549 1.16784 0.86854 0.81859 0.75413 1.90705 1.24157 1.77271 1.54156 1.45619 1.10449 1.04966 1.73024 1.22050 0.88930 0.89721 0.95929 0.87480 1.23083 1.02295 0.93944 0.97875 1.20923 0.95512 0.93991 0.83430 1.44707 1.50610 1.37117 1.02356 1.19367 1.21210 1.13036 0.83759 0.90979 1.25586 0.99828 0.98671 1.01332 1.70169 1.34802 1.25110 1.29439 0.85093 0.78040 0.76853 0.79419 1.21423 1.21508 1.19743 1.22058 0.93221 0.90186 0.94751 1.19452 0.85852 0.93760 1.04779 1.20821 0.98077 0.92703 1.02187 1.21773 0.98824 0.94632 0.94809 1.21543 0.90897 1.02153 1.00394 1.22705 1.04404 0.78426 1.01536 1.43114 1.06650 1.07984 1.45725 0.88210 0.89489 0.87361 0.75968 0.89474 0.88442 0.96744 0.96814 0.94305 0.94338 0.95908 0.84093 0.80744 0.78195 0.76965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.32 71.24 0.74 -0.14 16 2 C 0.16 4.18 7.94 137.83 1.09 5.27 16 3 N -0.45 -15.89 10.90 -175.24 -1.91 -17.80 16 4 C -0.12 -4.49 7.05 41.23 0.29 -4.20 16 5 C 0.60 25.02 7.77 86.33 0.67 25.69 16 6 O -0.58 -25.41 15.39 -4.58 -0.07 -25.48 16 7 N -0.69 -28.70 5.18 -440.23 -2.28 -30.98 16 8 C 0.14 5.62 3.43 46.39 0.16 5.78 16 9 H 0.11 4.01 7.54 -2.39 -0.02 3.99 16 10 C -0.13 -5.16 6.55 31.78 0.21 -4.95 16 11 C 0.19 9.58 5.36 86.73 0.47 10.05 16 12 N -0.62 -34.31 3.39 -691.99 -2.35 -36.66 16 13 C -0.24 -14.71 10.28 84.03 0.86 -13.85 16 14 H 0.07 4.25 7.83 -2.91 -0.02 4.23 16 15 C -0.06 -3.63 5.49 84.86 0.47 -3.16 16 16 N -0.95 -58.52 10.31 21.65 0.22 -58.29 16 17 Si 0.98 47.95 29.55 68.60 2.03 49.98 16 18 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 19 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 20 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 21 C 0.12 5.86 6.93 86.85 0.60 6.46 16 22 C 0.08 2.30 6.72 39.22 0.26 2.56 16 23 C -0.12 -2.89 9.73 22.29 0.22 -2.67 16 24 C -0.08 -1.06 10.08 22.35 0.23 -0.83 16 25 C -0.13 -1.05 9.98 22.06 0.22 -0.83 16 26 C 0.05 0.56 10.77 83.22 0.90 1.46 16 27 N -0.36 -8.25 2.94 -337.19 -0.99 -9.24 16 28 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.11 0.76 7.98 -2.39 -0.02 0.75 16 31 H 0.41 17.45 8.37 -92.71 -0.78 16.67 16 32 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 34 H 0.01 0.82 7.38 -2.39 -0.02 0.80 16 35 H 0.01 0.78 7.51 -2.39 -0.02 0.76 16 36 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 37 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.14 3.86 7.17 -2.91 -0.02 3.84 16 40 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 41 H 0.20 -0.30 8.06 -2.91 -0.02 -0.33 16 42 H 0.21 0.30 7.93 -2.91 -0.02 0.28 16 Total: -1.00 -84.88 352.39 2.30 -82.58 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.27 Total: 19.25 kcal Atomic # 6 Polarization: 19.26 SS G_CDS: 7.38 Total: 26.64 kcal Atomic # 7 Polarization: -145.66 SS G_CDS: -7.31 Total: -152.97 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.07 Total: -25.48 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -84.88 2.30 -82.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015265930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.473 kcal (2) G-P(sol) polarization free energy of solvation -84.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds