Wall clock time and date at job start Tue Mar 31 2020 10:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30171 * 125.09094 * 2 1 4 4 C 1.34896 * 109.73579 * 180.02562 * 3 2 1 5 5 C 1.46283 * 126.49740 * 180.02562 * 4 3 2 6 6 O 1.21781 * 119.99943 * 180.02562 * 5 4 3 7 7 N 1.34775 * 120.00103 * 0.02562 * 5 4 3 8 8 C 1.47420 * 125.65051 * 359.95641 * 7 5 4 9 9 C 1.54907 * 104.83524 * 204.16394 * 8 7 5 10 10 C 1.55155 * 101.58383 * 322.99460 * 9 8 7 11 11 H 1.08998 * 110.71769 * 277.13840 * 10 9 8 12 12 N 1.46495 * 110.72438 * 153.86514 * 10 9 8 13 13 C 1.36930 * 120.00334 * 160.02422 * 12 10 9 14 14 H 1.08006 * 120.00200 * 359.97438 * 13 12 10 15 15 C 1.38815 * 120.00466 * 179.97438 * 13 12 10 16 16 N 1.31624 * 119.99399 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00545 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.46682 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47302 * 119.99487 * 17 15 13 20 20 H 1.48499 * 109.47123 * 240.00017 * 17 15 13 21 21 C 1.47026 * 125.64519 * 180.02562 * 7 5 4 22 22 C 1.40144 * 107.00093 * 0.25676 * 4 3 2 23 23 C 1.40182 * 133.57656 * 180.46957 * 22 4 3 24 24 C 1.36337 * 119.20266 * 179.62509 * 23 22 4 25 25 C 1.40392 * 119.55665 * 359.68993 * 24 23 22 26 26 C 1.35027 * 120.44423 * 0.02562 * 25 24 23 27 27 N 1.36246 * 125.08680 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47137 * 89.97736 * 1 2 3 29 29 H 1.09003 * 109.47289 * 209.97620 * 1 2 3 30 30 H 1.08996 * 109.46880 * 329.97573 * 1 2 3 31 31 H 1.08997 * 110.36858 * 323.00625 * 8 7 5 32 32 H 1.08999 * 110.36307 * 85.32839 * 8 7 5 33 33 H 1.09001 * 111.00336 * 81.06484 * 9 8 7 34 34 H 1.08994 * 111.00852 * 204.88001 * 9 8 7 35 35 H 0.97005 * 119.99930 * 340.01546 * 12 10 9 36 36 H 0.96998 * 119.99462 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.88351 * 298.31826 * 21 7 5 38 38 H 1.08998 * 109.88379 * 59.48616 * 21 7 5 39 39 H 1.07998 * 120.40008 * 359.31377 * 23 22 4 40 40 H 1.07995 * 120.22268 * 179.71551 * 24 23 22 41 41 H 1.08004 * 119.77833 * 180.02562 * 25 24 23 42 42 H 1.07995 * 119.70649 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2553 1.0651 0.0000 4 6 3.5562 0.7079 -0.0006 5 6 4.7066 1.6115 -0.0002 6 8 5.8368 1.1582 -0.0013 7 7 4.5156 2.9456 0.0013 8 6 3.2080 3.6264 0.0017 9 6 3.4873 5.0221 -0.6096 10 6 4.8879 5.3438 -0.0247 11 1 4.8009 5.7507 0.9828 12 7 5.6143 6.2690 -0.8979 13 6 6.6637 6.9962 -0.4031 14 1 6.9558 6.8880 0.6311 15 6 7.3524 7.8725 -1.2306 16 7 6.9969 8.0039 -2.4911 17 14 8.7845 8.8640 -0.5559 18 1 8.9813 8.5357 0.8790 19 1 10.0175 8.5315 -1.3138 20 1 8.4928 10.3133 -0.6961 21 6 5.5769 3.9631 0.0012 22 6 3.5964 -0.6929 -0.0069 23 6 4.6393 -1.6297 -0.0021 24 6 4.3388 -2.9596 -0.0034 25 6 2.9950 -3.3660 -0.0030 26 6 2.0032 -2.4498 -0.0018 27 7 2.2902 -1.1149 -0.0005 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5142 31 1 2.4947 3.0785 -0.6139 32 1 2.8329 3.7266 1.0202 33 1 3.5205 4.9724 -1.6979 34 1 2.7475 5.7498 -0.2762 35 1 5.3519 6.3664 -1.8267 36 1 7.4778 8.6165 -3.0693 37 1 6.1819 3.8678 0.9029 38 1 6.2038 3.8448 -0.8825 39 1 5.6683 -1.3020 -0.0024 40 1 5.1293 -3.6954 -0.0043 41 1 2.7530 -4.4185 -0.0036 42 1 0.9736 -2.7757 -0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019144583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:37 Heat of formation + Delta-G solvation = 74.959175 kcal Electronic energy + Delta-G solvation = -25467.987464 eV Core-core repulsion = 21835.808015 eV Total energy + Delta-G solvation = -3632.179449 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.09701 -39.38795 -37.75240 -37.03830 -34.03003 -33.76778 -31.87016 -31.46384 -30.35204 -29.40938 -27.89258 -26.72279 -24.49842 -24.10575 -23.10473 -22.13264 -21.36960 -20.01240 -19.21521 -17.77949 -17.23011 -16.94519 -16.48882 -16.26275 -15.82630 -15.73202 -15.13138 -14.68929 -14.41822 -13.92015 -13.74403 -13.50797 -13.31482 -13.09668 -12.98670 -12.63518 -12.54023 -12.29736 -11.98445 -11.96808 -11.71781 -11.46734 -11.04903 -10.88042 -10.79607 -10.68109 -10.51686 -10.12371 -9.86645 -9.72268 -9.66056 -9.62582 -8.93005 -8.18865 -7.63771 -6.99978 -5.76593 -3.06655 0.38014 0.81202 2.17839 2.24890 2.99549 3.37925 3.46174 3.51945 3.54005 3.72742 3.99703 4.07726 4.31172 4.46944 4.58138 4.61843 4.74729 4.94812 5.01784 5.15343 5.21630 5.28696 5.42305 5.48416 5.51115 5.54308 5.72486 5.76844 5.85453 5.93731 5.98976 6.11931 6.23619 6.25254 6.30803 6.46527 6.56353 6.68385 6.77649 6.92329 7.01580 7.49298 7.73047 7.97690 8.41182 8.55343 9.53102 10.07896 10.42961 11.45765 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.026191 B = 0.002822 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.799989 B = 9921.323715 C =10723.613552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.162 3.838 3 N -0.409 5.409 4 C -0.043 4.043 5 C 0.610 3.390 6 O -0.553 6.553 7 N -0.596 5.596 8 C 0.108 3.892 9 C -0.142 4.142 10 C 0.171 3.829 11 H 0.065 0.935 12 N -0.714 5.714 13 C -0.244 4.244 14 H 0.073 0.927 15 C -0.011 4.011 16 N -0.931 5.931 17 Si 0.908 3.092 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.085 3.915 22 C 0.070 3.930 23 C -0.063 4.063 24 C -0.121 4.121 25 C -0.130 4.130 26 C 0.046 3.954 27 N -0.362 5.362 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.387 0.613 36 H 0.255 0.745 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.160 0.840 40 H 0.141 0.859 41 H 0.150 0.850 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.268 -24.303 5.532 29.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.094 4.094 3 N -0.125 5.125 4 C -0.178 4.178 5 C 0.399 3.601 6 O -0.432 6.432 7 N -0.328 5.328 8 C -0.015 4.015 9 C -0.181 4.181 10 C 0.059 3.941 11 H 0.083 0.917 12 N -0.354 5.354 13 C -0.375 4.375 14 H 0.091 0.909 15 C -0.208 4.208 16 N -0.579 5.579 17 Si 0.739 3.261 18 H -0.204 1.204 19 H -0.218 1.218 20 H -0.219 1.219 21 C -0.041 4.041 22 C -0.042 4.042 23 C -0.082 4.082 24 C -0.142 4.142 25 C -0.151 4.151 26 C -0.076 4.076 27 N -0.033 5.033 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.221 0.779 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.178 0.822 40 H 0.159 0.841 41 H 0.168 0.832 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -15.946 -23.599 5.630 29.033 hybrid contribution 1.000 -0.343 -0.026 1.058 sum -14.946 -23.943 5.604 28.776 Atomic orbital electron populations 1.20182 0.83926 1.04247 1.03712 1.23439 0.95738 0.78954 1.11281 1.70161 1.01501 1.26835 1.14043 1.20536 0.91495 0.89505 1.16292 1.16134 0.86262 0.80494 0.77244 1.90795 1.23318 1.76139 1.52918 1.48268 1.09581 1.04256 1.70714 1.22437 0.85354 0.92706 1.01021 1.23092 0.98519 0.95319 1.01190 1.21221 0.89497 0.88076 0.95286 0.91727 1.42388 1.36470 1.46005 1.10497 1.19320 1.06493 1.16320 0.95365 0.90894 1.24771 0.99886 1.00317 0.95779 1.69679 1.42962 1.40433 1.04803 0.86102 0.82245 0.79728 0.78026 1.20446 1.21816 1.21853 1.23231 0.90390 0.88517 1.01922 1.19253 0.83983 0.94285 1.06656 1.20865 0.99305 0.91199 0.96839 1.21212 0.96576 0.95911 1.00539 1.20904 0.92353 0.99917 1.01951 1.21632 1.01439 0.80353 1.04140 1.42855 1.07901 1.06452 1.46129 0.90031 0.90916 0.88617 0.89010 0.91923 0.90762 0.90204 0.77881 0.93485 0.92404 0.90863 0.82221 0.84100 0.83225 0.81639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.32 36.01 0.37 -0.01 16 2 C 0.16 1.81 7.94 -154.58 -1.23 0.58 16 3 N -0.41 -5.89 8.28 -6.74 -0.06 -5.95 16 4 C -0.04 -0.71 6.88 -82.57 -0.57 -1.28 16 5 C 0.61 11.73 7.81 -13.03 -0.10 11.63 16 6 O -0.55 -11.84 16.08 5.12 0.08 -11.76 16 7 N -0.60 -11.18 3.33 -172.19 -0.57 -11.76 16 8 C 0.11 1.72 6.13 -2.53 -0.02 1.70 16 9 C -0.14 -2.41 6.69 -24.58 -0.16 -2.57 16 10 C 0.17 3.52 3.59 -66.10 -0.24 3.28 16 11 H 0.06 1.31 8.12 -51.93 -0.42 0.89 16 12 N -0.71 -18.11 5.17 -51.65 -0.27 -18.37 16 13 C -0.24 -6.82 9.98 -15.06 -0.15 -6.98 16 14 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 15 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 16 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 17 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 C 0.08 1.75 6.62 -3.06 -0.02 1.73 16 22 C 0.07 0.98 6.72 -83.99 -0.56 0.41 16 23 C -0.06 -0.74 9.73 -39.54 -0.38 -1.12 16 24 C -0.12 -0.97 10.08 -39.46 -0.40 -1.37 16 25 C -0.13 -0.80 9.98 -39.91 -0.40 -1.20 16 26 C 0.05 0.32 10.77 -16.60 -0.18 0.14 16 27 N -0.36 -3.93 2.94 -57.93 -0.17 -4.10 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.27 7.99 -51.93 -0.41 -0.14 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.41 6.15 -51.93 -0.32 1.09 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.31 8.00 -51.93 -0.42 0.90 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.39 10.40 7.71 -40.82 -0.31 10.08 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.71 8.03 -51.93 -0.42 1.29 16 39 H 0.16 2.02 7.17 -52.49 -0.38 1.65 16 40 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.15 0.39 8.06 -52.48 -0.42 -0.03 16 42 H 0.17 0.50 7.94 -52.49 -0.42 0.09 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -35.43 352.56 -9.71 -45.13 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.60 Total: 6.94 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -4.13 Total: 4.52 kcal Atomic # 7 Polarization: -67.45 SS G_CDS: -0.34 Total: -67.79 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.43 -9.71 -45.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019144583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.093 kcal (2) G-P(sol) polarization free energy of solvation -35.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds