Wall clock time and date at job start Tue Mar 31 2020 10:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30171 * 125.09094 * 2 1 4 4 C 1.34896 * 109.73579 * 180.02562 * 3 2 1 5 5 C 1.46283 * 126.49740 * 180.02562 * 4 3 2 6 6 O 1.21781 * 119.99943 * 180.02562 * 5 4 3 7 7 N 1.34775 * 120.00103 * 0.02562 * 5 4 3 8 8 C 1.47420 * 125.65051 * 359.95641 * 7 5 4 9 9 C 1.54907 * 104.83524 * 204.16394 * 8 7 5 10 10 C 1.55155 * 101.58383 * 322.99460 * 9 8 7 11 11 H 1.08998 * 110.71769 * 277.13840 * 10 9 8 12 12 N 1.46495 * 110.72438 * 153.86514 * 10 9 8 13 13 C 1.36930 * 120.00334 * 160.02422 * 12 10 9 14 14 H 1.08006 * 120.00200 * 359.97438 * 13 12 10 15 15 C 1.38815 * 120.00466 * 179.97438 * 13 12 10 16 16 N 1.31624 * 119.99399 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00545 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.46682 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47302 * 119.99487 * 17 15 13 20 20 H 1.48499 * 109.47123 * 240.00017 * 17 15 13 21 21 C 1.47026 * 125.64519 * 180.02562 * 7 5 4 22 22 C 1.40144 * 107.00093 * 0.25676 * 4 3 2 23 23 C 1.40182 * 133.57656 * 180.46957 * 22 4 3 24 24 C 1.36337 * 119.20266 * 179.62509 * 23 22 4 25 25 C 1.40392 * 119.55665 * 359.68993 * 24 23 22 26 26 C 1.35027 * 120.44423 * 0.02562 * 25 24 23 27 27 N 1.36246 * 125.08680 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47137 * 89.97736 * 1 2 3 29 29 H 1.09003 * 109.47289 * 209.97620 * 1 2 3 30 30 H 1.08996 * 109.46880 * 329.97573 * 1 2 3 31 31 H 1.08997 * 110.36858 * 323.00625 * 8 7 5 32 32 H 1.08999 * 110.36307 * 85.32839 * 8 7 5 33 33 H 1.09001 * 111.00336 * 81.06484 * 9 8 7 34 34 H 1.08994 * 111.00852 * 204.88001 * 9 8 7 35 35 H 0.97005 * 119.99930 * 340.01546 * 12 10 9 36 36 H 0.96998 * 119.99462 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.88351 * 298.31826 * 21 7 5 38 38 H 1.08998 * 109.88379 * 59.48616 * 21 7 5 39 39 H 1.07998 * 120.40008 * 359.31377 * 23 22 4 40 40 H 1.07995 * 120.22268 * 179.71551 * 24 23 22 41 41 H 1.08004 * 119.77833 * 180.02562 * 25 24 23 42 42 H 1.07995 * 119.70649 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2553 1.0651 0.0000 4 6 3.5562 0.7079 -0.0006 5 6 4.7066 1.6115 -0.0002 6 8 5.8368 1.1582 -0.0013 7 7 4.5156 2.9456 0.0013 8 6 3.2080 3.6264 0.0017 9 6 3.4873 5.0221 -0.6096 10 6 4.8879 5.3438 -0.0247 11 1 4.8009 5.7507 0.9828 12 7 5.6143 6.2690 -0.8979 13 6 6.6637 6.9962 -0.4031 14 1 6.9558 6.8880 0.6311 15 6 7.3524 7.8725 -1.2306 16 7 6.9969 8.0039 -2.4911 17 14 8.7845 8.8640 -0.5559 18 1 8.9813 8.5357 0.8790 19 1 10.0175 8.5315 -1.3138 20 1 8.4928 10.3133 -0.6961 21 6 5.5769 3.9631 0.0012 22 6 3.5964 -0.6929 -0.0069 23 6 4.6393 -1.6297 -0.0021 24 6 4.3388 -2.9596 -0.0034 25 6 2.9950 -3.3660 -0.0030 26 6 2.0032 -2.4498 -0.0018 27 7 2.2902 -1.1149 -0.0005 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5142 31 1 2.4947 3.0785 -0.6139 32 1 2.8329 3.7266 1.0202 33 1 3.5205 4.9724 -1.6979 34 1 2.7475 5.7498 -0.2762 35 1 5.3519 6.3664 -1.8267 36 1 7.4778 8.6165 -3.0693 37 1 6.1819 3.8678 0.9029 38 1 6.2038 3.8448 -0.8825 39 1 5.6683 -1.3020 -0.0024 40 1 5.1293 -3.6954 -0.0043 41 1 2.7530 -4.4185 -0.0036 42 1 0.9736 -2.7757 -0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019144583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:36 Heat of formation + Delta-G solvation = 51.802129 kcal Electronic energy + Delta-G solvation = -25468.991629 eV Core-core repulsion = 21835.808015 eV Total energy + Delta-G solvation = -3633.183614 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.93454 -40.84345 -38.64926 -38.48746 -35.92396 -34.64309 -33.33166 -32.55372 -31.27898 -30.89763 -29.36803 -27.79639 -26.08320 -24.95997 -24.56299 -23.43479 -22.13174 -21.62173 -20.52968 -19.31180 -18.75203 -17.86920 -17.51239 -17.29683 -17.11813 -16.64631 -16.41254 -16.27597 -15.56452 -15.33285 -15.23586 -14.80760 -14.59768 -14.27921 -13.99629 -13.76005 -13.50707 -13.39348 -13.19000 -13.07025 -12.91700 -12.68850 -12.63161 -12.55966 -12.43428 -12.09332 -11.81034 -11.76515 -11.70669 -11.34635 -11.12151 -10.97890 -10.39774 -9.69976 -9.11656 -8.50516 -7.97735 -5.28394 -0.39815 0.05737 1.19968 1.40721 1.46540 1.47974 1.57961 2.02393 2.23720 2.52686 2.55208 3.15900 3.33594 3.40493 3.67612 3.69329 3.73134 3.83124 3.91955 3.97051 4.15210 4.19473 4.33620 4.37340 4.54668 4.55642 4.70947 4.75833 4.76857 4.83414 4.93379 5.00923 5.04162 5.10496 5.14551 5.21879 5.23957 5.33629 5.43106 5.50853 5.53616 6.12913 6.23701 6.48721 6.63612 7.13221 7.30272 8.01048 8.26250 9.25625 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.026191 B = 0.002822 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.799989 B = 9921.323715 C =10723.613552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.167 3.833 3 N -0.433 5.433 4 C -0.111 4.111 5 C 0.603 3.397 6 O -0.594 6.594 7 N -0.604 5.604 8 C 0.120 3.880 9 C -0.129 4.129 10 C 0.168 3.832 11 H 0.073 0.927 12 N -0.725 5.725 13 C -0.246 4.246 14 H 0.078 0.922 15 C -0.073 4.073 16 N -0.968 5.968 17 Si 0.974 3.026 18 H -0.266 1.266 19 H -0.296 1.296 20 H -0.289 1.289 21 C 0.097 3.903 22 C 0.074 3.926 23 C -0.124 4.124 24 C -0.078 4.078 25 C -0.133 4.133 26 C 0.055 3.945 27 N -0.364 5.364 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.376 0.624 36 H 0.252 0.748 37 H 0.047 0.953 38 H 0.036 0.964 39 H 0.133 0.867 40 H 0.171 0.829 41 H 0.200 0.800 42 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.508 -27.670 6.661 34.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.091 4.091 3 N -0.149 5.149 4 C -0.242 4.242 5 C 0.394 3.606 6 O -0.477 6.477 7 N -0.335 5.335 8 C -0.002 4.002 9 C -0.167 4.167 10 C 0.058 3.942 11 H 0.091 0.909 12 N -0.364 5.364 13 C -0.378 4.378 14 H 0.096 0.904 15 C -0.265 4.265 16 N -0.618 5.618 17 Si 0.803 3.197 18 H -0.190 1.190 19 H -0.223 1.223 20 H -0.216 1.216 21 C -0.029 4.029 22 C -0.040 4.040 23 C -0.144 4.144 24 C -0.100 4.100 25 C -0.152 4.152 26 C -0.065 4.065 27 N -0.035 5.035 28 H 0.114 0.886 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.125 0.875 35 H 0.209 0.791 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.151 0.849 40 H 0.188 0.812 41 H 0.217 0.783 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -19.220 -26.965 6.799 33.805 hybrid contribution 1.885 0.314 -0.356 1.944 sum -17.335 -26.651 6.443 32.439 Atomic orbital electron populations 1.20438 0.80131 1.06043 1.05177 1.24375 0.97379 0.78285 1.09038 1.69975 1.00863 1.28871 1.15193 1.19994 0.91361 0.90195 1.22612 1.16697 0.87028 0.80724 0.76124 1.90735 1.25208 1.76829 1.54927 1.48321 1.09826 1.04160 1.71206 1.22478 0.84192 0.91526 1.01991 1.23030 0.96628 0.96578 1.00488 1.21380 0.90977 0.86672 0.95174 0.90905 1.42525 1.36552 1.46717 1.10559 1.19688 1.06752 1.15786 0.95534 0.90446 1.25598 1.02778 1.02002 0.96168 1.69830 1.44400 1.41522 1.06040 0.85063 0.78692 0.78046 0.77891 1.19028 1.22286 1.21558 1.22821 0.90751 0.89764 0.99610 1.19365 0.85937 0.93753 1.04949 1.20779 0.98026 0.92966 1.02601 1.21744 0.98981 0.94503 0.94773 1.21527 0.90763 1.02284 1.00651 1.22715 1.04327 0.78429 1.01061 1.43118 1.06452 1.08096 1.45796 0.88554 0.87503 0.88448 0.88073 0.90346 0.91756 0.87534 0.79129 0.93900 0.93481 0.94554 0.84936 0.81178 0.78268 0.76597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.32 71.24 0.74 0.24 16 2 C 0.17 3.37 7.94 137.84 1.09 4.46 16 3 N -0.43 -12.48 8.28 -175.25 -1.45 -13.94 16 4 C -0.11 -3.82 6.88 41.23 0.28 -3.54 16 5 C 0.60 25.26 7.81 86.33 0.67 25.93 16 6 O -0.59 -28.27 16.08 -4.61 -0.07 -28.35 16 7 N -0.60 -24.22 3.33 -816.88 -2.72 -26.93 16 8 C 0.12 3.89 6.13 86.86 0.53 4.42 16 9 C -0.13 -4.40 6.69 31.98 0.21 -4.18 16 10 C 0.17 7.16 3.59 46.18 0.17 7.33 16 11 H 0.07 2.99 8.12 -2.39 -0.02 2.97 16 12 N -0.72 -38.20 5.17 -317.33 -1.64 -39.84 16 13 C -0.25 -14.12 9.98 84.04 0.84 -13.28 16 14 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 15 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 16 N -0.97 -60.72 13.06 21.65 0.28 -60.44 16 17 Si 0.97 47.60 29.55 68.60 2.03 49.63 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 19 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 20 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 21 C 0.10 4.31 6.62 86.73 0.57 4.89 16 22 C 0.07 2.11 6.72 39.23 0.26 2.37 16 23 C -0.12 -3.02 9.73 22.30 0.22 -2.80 16 24 C -0.08 -1.03 10.08 22.35 0.23 -0.80 16 25 C -0.13 -0.88 9.98 22.06 0.22 -0.66 16 26 C 0.06 0.47 10.77 83.22 0.90 1.37 16 27 N -0.36 -6.99 2.94 -337.20 -0.99 -7.98 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.11 0.17 7.99 -2.39 -0.02 0.15 16 30 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 3.14 6.15 -2.39 -0.01 3.12 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 2.34 8.00 -2.39 -0.02 2.32 16 34 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.38 21.16 7.71 -92.70 -0.72 20.44 16 36 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.04 1.86 8.03 -2.39 -0.02 1.84 16 39 H 0.13 3.83 7.17 -2.91 -0.02 3.81 16 40 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 41 H 0.20 -0.54 8.06 -2.91 -0.02 -0.56 16 42 H 0.22 -0.38 7.94 -2.91 -0.02 -0.40 16 Total: -1.00 -85.24 352.56 3.17 -82.07 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.33 Total: 23.88 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 7.40 Total: 21.89 kcal Atomic # 7 Polarization: -142.61 SS G_CDS: -6.52 Total: -149.13 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.07 Total: -28.35 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -85.24 3.17 -82.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019144583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.873 kcal (2) G-P(sol) polarization free energy of solvation -85.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds