Wall clock time and date at job start Tue Mar 31 2020 10:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30090 * 124.97716 * 2 1 4 4 C 1.35856 * 109.53119 * 180.02562 * 3 2 1 5 5 C 1.39719 * 133.50345 * 180.02562 * 4 3 2 6 6 C 1.37842 * 120.10809 * 179.97438 * 5 4 3 7 7 C 1.38326 * 120.72513 * 359.97438 * 6 5 4 8 8 C 1.39400 * 120.28275 * 0.02562 * 7 6 5 9 9 C 1.47525 * 120.24824 * 179.97438 * 8 7 6 10 10 O 1.21594 * 119.99978 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00323 * 359.97438 * 9 8 7 12 12 C 1.46496 * 120.00456 * 180.02562 * 11 9 8 13 13 H 1.09001 * 112.84545 * 23.80741 * 12 11 9 14 14 C 1.53775 * 113.61716 * 155.00638 * 12 11 9 15 15 C 1.53774 * 87.08509 * 139.98073 * 14 12 11 16 16 H 1.08994 * 113.61636 * 219.93324 * 15 14 12 17 17 N 1.46500 * 113.61399 * 89.11429 * 15 14 12 18 18 C 1.36935 * 120.00293 * 154.99988 * 17 15 14 19 19 H 1.08007 * 119.99666 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00500 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99879 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00120 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47234 * 60.00543 * 22 20 18 24 24 H 1.48501 * 109.46923 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47333 * 300.00290 * 22 20 18 26 26 C 1.53782 * 87.08202 * 334.56854 * 15 14 12 27 27 C 1.40192 * 119.50346 * 359.95969 * 8 7 6 28 28 N 1.36119 * 124.97862 * 179.69433 * 2 1 3 29 29 H 0.97001 * 126.31226 * 359.97438 * 28 2 1 30 30 H 1.09002 * 109.47152 * 90.02783 * 1 2 3 31 31 H 1.09001 * 109.46980 * 330.02883 * 1 2 3 32 32 H 1.09004 * 109.47113 * 210.02864 * 1 2 3 33 33 H 1.08000 * 119.94874 * 359.97438 * 5 4 3 34 34 H 1.07992 * 119.63822 * 179.97438 * 6 5 4 35 35 H 1.07995 * 119.86071 * 180.02562 * 7 6 5 36 36 H 0.97004 * 119.99514 * 0.02562 * 11 9 8 37 37 H 1.09003 * 113.61550 * 254.53243 * 14 12 11 38 38 H 1.08998 * 113.61488 * 25.34455 * 14 12 11 39 39 H 0.96998 * 120.00149 * 335.00374 * 17 15 14 40 40 H 0.97000 * 120.00533 * 180.02562 * 21 20 18 41 41 H 1.09001 * 113.61398 * 270.88785 * 26 15 14 42 42 H 1.08994 * 113.61838 * 139.97607 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2528 1.0659 0.0000 4 6 3.5623 0.7041 -0.0006 5 6 4.7592 1.4248 -0.0004 6 6 5.9667 0.7598 -0.0006 7 6 6.0122 -0.6227 -0.0005 8 6 4.8321 -1.3648 -0.0007 9 6 4.8815 -2.8392 -0.0011 10 8 3.8494 -3.4821 -0.0018 11 7 6.0706 -3.4738 -0.0019 12 6 6.1197 -4.9379 -0.0029 13 1 5.2152 -5.3914 -0.4085 14 6 7.4165 -5.5104 -0.5989 15 6 7.3771 -6.5594 0.5248 16 1 8.3559 -6.7802 0.9505 17 7 6.6236 -7.7661 0.1750 18 6 6.9014 -8.9522 0.8005 19 1 7.6757 -8.9979 1.5521 20 6 6.1871 -10.0954 0.4695 21 7 5.2431 -10.0396 -0.4460 22 14 6.5666 -11.7135 1.3223 23 1 6.3495 -11.5656 2.7838 24 1 5.6714 -12.7737 0.7933 25 1 7.9809 -12.0877 1.0673 26 6 6.5640 -5.5403 1.3405 27 6 3.5981 -0.6995 -0.0001 28 7 2.2874 -1.1153 0.0060 29 1 1.9762 -2.0340 0.0112 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 0.8903 0.5134 32 1 -0.3633 -0.8898 0.5143 33 1 4.7385 2.5046 0.0000 34 1 6.8873 1.3244 -0.0009 35 1 6.9659 -1.1293 -0.0002 36 1 6.8940 -2.9609 -0.0017 37 1 7.2895 -5.9332 -1.5956 38 1 8.2651 -4.8296 -0.5330 39 1 5.9280 -7.7250 -0.4997 40 1 4.7437 -10.8384 -0.6771 41 1 7.1800 -4.8682 1.9379 42 1 5.7489 -5.9872 1.9095 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020881172.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:10 Heat of formation + Delta-G solvation = 64.025967 kcal Electronic energy + Delta-G solvation = -24914.797321 eV Core-core repulsion = 21282.143772 eV Total energy + Delta-G solvation = -3632.653549 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.44332 -39.93362 -38.17998 -37.26518 -34.14422 -33.31903 -32.74415 -31.62095 -30.47842 -29.55152 -27.92202 -25.15521 -24.95200 -23.65280 -22.67454 -22.32508 -21.15759 -20.54805 -19.03009 -17.94001 -17.72676 -17.36261 -16.55980 -15.99771 -15.83995 -15.33850 -14.92980 -14.73805 -14.46378 -14.24010 -13.99377 -13.50671 -13.32860 -13.14600 -13.01595 -12.75786 -12.30760 -12.23501 -12.14646 -12.02723 -11.80265 -11.67354 -10.90629 -10.87171 -10.83066 -10.47880 -10.32301 -10.20921 -10.01130 -9.75428 -9.65430 -8.95293 -8.84256 -8.60882 -8.39114 -7.04106 -5.81994 -3.12285 0.32738 1.22613 2.24834 2.71975 2.99333 3.20111 3.41508 3.45827 3.47055 3.68541 3.81135 4.36801 4.53557 4.58956 4.61764 4.84151 4.92766 5.01042 5.10030 5.12261 5.18089 5.20094 5.35091 5.43760 5.43903 5.48209 5.67232 5.83737 5.92664 6.01500 6.04507 6.09054 6.14874 6.16514 6.32008 6.49357 6.57612 6.67620 6.72999 6.98188 7.14736 7.55892 7.59981 7.66158 8.21507 8.36143 9.46834 10.02784 10.36741 11.40113 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.021711 B = 0.002598 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.383528 B =10773.186239 C =11817.695599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.282 3.718 3 N -0.494 5.494 4 C 0.037 3.963 5 C -0.039 4.039 6 C -0.138 4.138 7 C -0.065 4.065 8 C -0.126 4.126 9 C 0.557 3.443 10 O -0.549 6.549 11 N -0.708 5.708 12 C 0.124 3.876 13 H 0.114 0.886 14 C -0.164 4.164 15 C 0.172 3.828 16 H 0.069 0.931 17 N -0.705 5.705 18 C -0.246 4.246 19 H 0.072 0.928 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.910 3.090 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.184 4.184 27 C 0.100 3.900 28 N -0.581 5.581 29 H 0.435 0.565 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.397 0.603 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.386 0.614 40 H 0.257 0.743 41 H 0.070 0.930 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 24.391 0.046 24.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.015 3.985 3 N -0.215 5.215 4 C -0.082 4.082 5 C -0.059 4.059 6 C -0.159 4.159 7 C -0.086 4.086 8 C -0.132 4.132 9 C 0.344 3.656 10 O -0.428 6.428 11 N -0.357 5.357 12 C 0.021 3.979 13 H 0.132 0.868 14 C -0.204 4.204 15 C 0.059 3.941 16 H 0.087 0.913 17 N -0.344 5.344 18 C -0.377 4.377 19 H 0.090 0.910 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.741 3.259 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.226 4.226 27 C -0.014 4.014 28 N -0.192 5.192 29 H 0.277 0.723 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.232 0.768 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.220 0.780 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.576 24.570 0.124 24.705 hybrid contribution 0.464 -1.874 0.244 1.945 sum -2.112 22.696 0.368 22.797 Atomic orbital electron populations 1.20408 0.83945 1.04884 1.04449 1.23746 0.95930 0.81043 0.97736 1.70476 1.00471 1.27519 1.23064 1.19074 0.92420 0.89855 1.06827 1.20441 0.88998 0.99963 0.96502 1.20815 0.97656 0.93825 1.03565 1.21136 0.96307 0.94229 0.96898 1.18990 0.91012 0.92832 1.10344 1.18183 0.84311 0.86723 0.76334 1.90719 1.33446 1.67787 1.50859 1.46023 1.07514 1.08260 1.73907 1.22709 0.99705 0.76900 0.98623 0.86785 1.23906 0.96079 0.99345 1.01078 1.20901 0.94777 0.85876 0.92550 0.91273 1.42191 1.41800 1.03634 1.46743 1.19226 1.15667 0.86309 1.16539 0.90956 1.24787 0.98540 0.98157 0.99253 1.69656 1.25230 1.28733 1.34204 0.86231 0.77430 0.83348 0.78937 1.21179 1.21651 1.21151 1.24328 1.01792 0.99866 0.96617 1.18584 0.84986 0.94571 1.03250 1.43202 1.04608 1.10895 1.60521 0.72319 0.89154 0.88448 0.89869 0.84845 0.84532 0.84780 0.76826 0.90779 0.90237 0.77990 0.93298 0.91189 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.51 36.01 0.38 -0.12 16 2 C 0.28 3.12 8.08 -154.76 -1.25 1.87 16 3 N -0.49 -6.41 11.28 -8.23 -0.09 -6.51 16 4 C 0.04 0.47 7.22 -84.71 -0.61 -0.14 16 5 C -0.04 -0.39 10.09 -39.17 -0.40 -0.79 16 6 C -0.14 -1.12 9.99 -39.69 -0.40 -1.52 16 7 C -0.07 -0.61 9.53 -39.12 -0.37 -0.98 16 8 C -0.13 -1.59 5.88 -104.94 -0.62 -2.21 16 9 C 0.56 8.35 7.76 -12.47 -0.10 8.25 16 10 O -0.55 -10.08 14.89 5.28 0.08 -10.00 16 11 N -0.71 -9.32 5.31 -54.06 -0.29 -9.61 16 12 C 0.12 2.02 4.12 -67.12 -0.28 1.74 16 13 H 0.11 2.24 7.46 -51.93 -0.39 1.85 16 14 C -0.16 -2.52 7.58 -25.93 -0.20 -2.72 16 15 C 0.17 3.30 4.56 -67.12 -0.31 2.99 16 16 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 17 N -0.71 -17.47 5.31 -52.64 -0.28 -17.75 16 18 C -0.25 -6.77 9.97 -15.06 -0.15 -6.92 16 19 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 22 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C -0.18 -3.18 7.68 -25.92 -0.20 -3.38 16 27 C 0.10 1.35 6.88 -83.77 -0.58 0.78 16 28 N -0.58 -7.18 6.00 -7.81 -0.05 -7.23 16 29 H 0.43 5.22 7.72 -40.82 -0.32 4.90 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.85 6.39 -52.49 -0.34 0.51 16 36 H 0.40 3.83 6.76 -40.82 -0.28 3.56 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 39 H 0.39 10.24 7.90 -40.82 -0.32 9.92 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 355.62 15.07 5.36 5.36 Total: -1.00 -34.70 355.62 -10.14 -44.84 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -5.41 Total: 14.60 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -5.16 Total: -3.56 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: 0.02 Total: -68.45 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.70 -10.14 -44.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020881172.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.862 kcal (2) G-P(sol) polarization free energy of solvation -34.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds