Wall clock time and date at job start Tue Mar 31 2020 10:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30090 * 124.97716 * 2 1 4 4 C 1.35856 * 109.53119 * 180.02562 * 3 2 1 5 5 C 1.39719 * 133.50345 * 180.02562 * 4 3 2 6 6 C 1.37842 * 120.10809 * 179.97438 * 5 4 3 7 7 C 1.38326 * 120.72513 * 359.97438 * 6 5 4 8 8 C 1.39400 * 120.28275 * 0.02562 * 7 6 5 9 9 C 1.47525 * 120.24824 * 179.97438 * 8 7 6 10 10 O 1.21594 * 119.99978 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00323 * 359.97438 * 9 8 7 12 12 C 1.46496 * 120.00456 * 180.02562 * 11 9 8 13 13 H 1.09001 * 112.84545 * 23.80741 * 12 11 9 14 14 C 1.53775 * 113.61716 * 155.00638 * 12 11 9 15 15 C 1.53774 * 87.08509 * 139.98073 * 14 12 11 16 16 H 1.08994 * 113.61636 * 219.93324 * 15 14 12 17 17 N 1.46500 * 113.61399 * 89.11429 * 15 14 12 18 18 C 1.36935 * 120.00293 * 154.99988 * 17 15 14 19 19 H 1.08007 * 119.99666 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00500 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99879 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00120 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47234 * 60.00543 * 22 20 18 24 24 H 1.48501 * 109.46923 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47333 * 300.00290 * 22 20 18 26 26 C 1.53782 * 87.08202 * 334.56854 * 15 14 12 27 27 C 1.40192 * 119.50346 * 359.95969 * 8 7 6 28 28 N 1.36119 * 124.97862 * 179.69433 * 2 1 3 29 29 H 0.97001 * 126.31226 * 359.97438 * 28 2 1 30 30 H 1.09002 * 109.47152 * 90.02783 * 1 2 3 31 31 H 1.09001 * 109.46980 * 330.02883 * 1 2 3 32 32 H 1.09004 * 109.47113 * 210.02864 * 1 2 3 33 33 H 1.08000 * 119.94874 * 359.97438 * 5 4 3 34 34 H 1.07992 * 119.63822 * 179.97438 * 6 5 4 35 35 H 1.07995 * 119.86071 * 180.02562 * 7 6 5 36 36 H 0.97004 * 119.99514 * 0.02562 * 11 9 8 37 37 H 1.09003 * 113.61550 * 254.53243 * 14 12 11 38 38 H 1.08998 * 113.61488 * 25.34455 * 14 12 11 39 39 H 0.96998 * 120.00149 * 335.00374 * 17 15 14 40 40 H 0.97000 * 120.00533 * 180.02562 * 21 20 18 41 41 H 1.09001 * 113.61398 * 270.88785 * 26 15 14 42 42 H 1.08994 * 113.61838 * 139.97607 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2528 1.0659 0.0000 4 6 3.5623 0.7041 -0.0006 5 6 4.7592 1.4248 -0.0004 6 6 5.9667 0.7598 -0.0006 7 6 6.0122 -0.6227 -0.0005 8 6 4.8321 -1.3648 -0.0007 9 6 4.8815 -2.8392 -0.0011 10 8 3.8494 -3.4821 -0.0018 11 7 6.0706 -3.4738 -0.0019 12 6 6.1197 -4.9379 -0.0029 13 1 5.2152 -5.3914 -0.4085 14 6 7.4165 -5.5104 -0.5989 15 6 7.3771 -6.5594 0.5248 16 1 8.3559 -6.7802 0.9505 17 7 6.6236 -7.7661 0.1750 18 6 6.9014 -8.9522 0.8005 19 1 7.6757 -8.9979 1.5521 20 6 6.1871 -10.0954 0.4695 21 7 5.2431 -10.0396 -0.4460 22 14 6.5666 -11.7135 1.3223 23 1 6.3495 -11.5656 2.7838 24 1 5.6714 -12.7737 0.7933 25 1 7.9809 -12.0877 1.0673 26 6 6.5640 -5.5403 1.3405 27 6 3.5981 -0.6995 -0.0001 28 7 2.2874 -1.1153 0.0060 29 1 1.9762 -2.0340 0.0112 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 0.8903 0.5134 32 1 -0.3633 -0.8898 0.5143 33 1 4.7385 2.5046 0.0000 34 1 6.8873 1.3244 -0.0009 35 1 6.9659 -1.1293 -0.0002 36 1 6.8940 -2.9609 -0.0017 37 1 7.2895 -5.9332 -1.5956 38 1 8.2651 -4.8296 -0.5330 39 1 5.9280 -7.7250 -0.4997 40 1 4.7437 -10.8384 -0.6771 41 1 7.1800 -4.8682 1.9379 42 1 5.7489 -5.9872 1.9095 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020881172.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:09 Heat of formation + Delta-G solvation = 39.248259 kcal Electronic energy + Delta-G solvation = -24915.871763 eV Core-core repulsion = 21282.143772 eV Total energy + Delta-G solvation = -3633.727991 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.27803 -41.15334 -39.49370 -38.14000 -35.78484 -34.44903 -34.08273 -32.31148 -31.87288 -30.94853 -28.61964 -26.55820 -26.46034 -25.22588 -23.78598 -23.30772 -21.97564 -21.64999 -20.38564 -19.37640 -18.92285 -18.58401 -17.53612 -17.26772 -16.72420 -16.67929 -16.11878 -15.94372 -15.68071 -15.56729 -15.18123 -14.96582 -14.43108 -14.21180 -13.93122 -13.65114 -13.53426 -13.35672 -13.31094 -13.05167 -12.84651 -12.77468 -12.61312 -12.53534 -12.23336 -11.85041 -11.77429 -11.74077 -11.44265 -11.35600 -10.94694 -10.83165 -10.09777 -9.42753 -9.23279 -9.04467 -7.97076 -5.26898 -0.49728 0.42953 1.36687 1.46268 1.49715 1.55676 1.91186 2.00394 2.09038 2.54295 2.82954 3.10349 3.34767 3.50724 3.61784 3.78223 3.83265 3.88055 3.92165 4.17362 4.20833 4.28793 4.31646 4.36101 4.54339 4.64837 4.75453 4.80288 4.82175 4.92585 4.98747 5.00343 5.12691 5.21762 5.24627 5.28110 5.36316 5.41005 5.48829 5.64364 5.79271 6.25243 6.28880 6.50466 6.75296 7.14932 7.29897 8.06324 8.27285 9.26292 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.021711 B = 0.002598 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.383528 B =10773.186239 C =11817.695599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.277 3.723 3 N -0.520 5.520 4 C 0.010 3.990 5 C -0.041 4.041 6 C -0.125 4.125 7 C -0.049 4.049 8 C -0.152 4.152 9 C 0.552 3.448 10 O -0.595 6.595 11 N -0.690 5.690 12 C 0.131 3.869 13 H 0.070 0.930 14 C -0.137 4.137 15 C 0.151 3.849 16 H 0.081 0.919 17 N -0.724 5.724 18 C -0.244 4.244 19 H 0.083 0.917 20 C -0.079 4.079 21 N -0.973 5.973 22 Si 0.976 3.024 23 H -0.279 1.279 24 H -0.298 1.298 25 H -0.273 1.273 26 C -0.171 4.171 27 C 0.070 3.930 28 N -0.590 5.590 29 H 0.431 0.569 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.154 0.846 34 H 0.181 0.819 35 H 0.170 0.830 36 H 0.418 0.582 37 H 0.061 0.939 38 H 0.130 0.870 39 H 0.371 0.629 40 H 0.251 0.749 41 H 0.107 0.893 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.193 26.688 0.696 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.010 3.990 3 N -0.242 5.242 4 C -0.108 4.108 5 C -0.061 4.061 6 C -0.145 4.145 7 C -0.069 4.069 8 C -0.159 4.159 9 C 0.342 3.658 10 O -0.477 6.477 11 N -0.341 5.341 12 C 0.026 3.974 13 H 0.089 0.911 14 C -0.177 4.177 15 C 0.040 3.960 16 H 0.099 0.901 17 N -0.361 5.361 18 C -0.376 4.376 19 H 0.101 0.899 20 C -0.271 4.271 21 N -0.623 5.623 22 Si 0.805 3.195 23 H -0.205 1.205 24 H -0.225 1.225 25 H -0.199 1.199 26 C -0.213 4.213 27 C -0.044 4.044 28 N -0.201 5.201 29 H 0.272 0.728 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.172 0.828 34 H 0.198 0.802 35 H 0.187 0.813 36 H 0.257 0.743 37 H 0.080 0.920 38 H 0.148 0.852 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.126 0.874 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.320 26.944 0.801 26.958 hybrid contribution -0.360 -2.424 0.068 2.452 sum -0.040 24.520 0.868 24.535 Atomic orbital electron populations 1.20601 0.81084 1.06046 1.05699 1.24554 0.97485 0.80361 0.96551 1.70467 1.00996 1.28306 1.24397 1.19568 0.93321 0.89974 1.07921 1.20897 0.88669 1.01149 0.95377 1.21302 0.98543 0.93466 1.01219 1.21609 0.96283 0.94875 0.94085 1.18967 0.92202 0.91302 1.13382 1.18648 0.83944 0.87860 0.75362 1.90697 1.35120 1.68974 1.52949 1.45712 1.08154 1.06849 1.73351 1.22260 0.98608 0.78644 0.97932 0.91144 1.23754 0.96950 0.98131 0.98815 1.21244 0.94652 0.85058 0.95012 0.90132 1.42400 1.42266 1.04959 1.46494 1.19686 1.14796 0.87290 1.15785 0.89946 1.25643 0.99071 1.01767 1.00622 1.69831 1.26920 1.29123 1.36414 0.85170 0.77432 0.79011 0.77899 1.20484 1.22466 1.19857 1.24196 1.00617 0.99674 0.96764 1.18996 0.85608 0.95349 1.04454 1.43336 1.04901 1.11004 1.60902 0.72759 0.87725 0.87383 0.88513 0.82828 0.80190 0.81291 0.74256 0.92020 0.85234 0.79725 0.94054 0.87438 0.94837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.51 71.24 0.75 -0.20 16 2 C 0.28 6.29 8.08 137.90 1.11 7.40 16 3 N -0.52 -13.60 11.28 -179.96 -2.03 -15.64 16 4 C 0.01 0.25 7.22 39.41 0.28 0.54 16 5 C -0.04 -0.72 10.09 22.53 0.23 -0.49 16 6 C -0.13 -1.51 9.99 22.20 0.22 -1.29 16 7 C -0.05 -0.73 9.53 22.57 0.22 -0.51 16 8 C -0.15 -3.72 5.88 -20.07 -0.12 -3.84 16 9 C 0.55 16.52 7.76 86.69 0.67 17.19 16 10 O -0.59 -23.08 14.89 -4.01 -0.06 -23.14 16 11 N -0.69 -16.88 5.31 -443.21 -2.35 -19.23 16 12 C 0.13 4.18 4.12 45.52 0.19 4.36 16 13 H 0.07 2.93 7.46 -2.39 -0.02 2.91 16 14 C -0.14 -3.90 7.58 31.12 0.24 -3.66 16 15 C 0.15 5.61 4.56 45.52 0.21 5.81 16 16 H 0.08 2.81 8.10 -2.39 -0.02 2.79 16 17 N -0.72 -36.54 5.31 -320.46 -1.70 -38.24 16 18 C -0.24 -13.51 9.97 84.03 0.84 -12.67 16 19 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 20 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 21 N -0.97 -60.76 13.06 21.65 0.28 -60.48 16 22 Si 0.98 46.34 29.55 68.60 2.03 48.36 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 26 C -0.17 -5.72 7.68 31.12 0.24 -5.49 16 27 C 0.07 1.91 6.88 39.26 0.27 2.18 16 28 N -0.59 -15.41 6.00 -178.61 -1.07 -16.48 16 29 H 0.43 11.35 7.72 -92.71 -0.72 10.63 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.18 0.64 8.06 -2.91 -0.02 0.61 16 35 H 0.17 1.20 6.39 -2.91 -0.02 1.18 16 36 H 0.42 6.32 6.76 -92.71 -0.63 5.69 16 37 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.13 2.43 8.12 -2.39 -0.02 2.41 16 39 H 0.37 20.59 7.90 -92.71 -0.73 19.86 16 40 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 41 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 42 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -81.05 355.62 -0.08 -81.12 By element: Atomic # 1 Polarization: 39.48 SS G_CDS: -0.99 Total: 38.49 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 5.81 Total: 5.23 kcal Atomic # 7 Polarization: -143.19 SS G_CDS: -6.87 Total: -150.06 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.06 Total: -23.14 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -81.05 -0.08 -81.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020881172.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.372 kcal (2) G-P(sol) polarization free energy of solvation -81.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds