Wall clock time and date at job start Tue Mar 31 2020 10:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30182 * 125.08819 * 2 1 4 4 C 1.34883 * 109.73208 * 180.02562 * 3 2 1 5 5 C 1.46287 * 126.49736 * 180.02562 * 4 3 2 6 6 O 1.21772 * 120.00330 * 180.02562 * 5 4 3 7 7 N 1.34783 * 119.99998 * 0.02562 * 5 4 3 8 8 C 1.46496 * 120.00257 * 180.02562 * 7 5 4 9 9 H 1.08999 * 112.84936 * 313.76334 * 8 7 5 10 10 C 1.53786 * 113.61214 * 84.95325 * 8 7 5 11 11 C 1.53781 * 87.07903 * 89.20329 * 10 8 7 12 12 H 1.08996 * 113.61392 * 140.06245 * 11 10 8 13 13 N 1.46506 * 113.61422 * 270.88431 * 11 10 8 14 14 C 1.36934 * 119.99979 * 202.42083 * 13 11 10 15 15 H 1.08001 * 120.00139 * 359.97438 * 14 13 11 16 16 C 1.38806 * 119.99808 * 179.72158 * 14 13 11 17 17 N 1.31625 * 120.00130 * 180.27742 * 16 14 13 18 18 Si 1.86804 * 120.00025 * 0.27432 * 16 14 13 19 19 H 1.48502 * 109.46748 * 90.00251 * 18 16 14 20 20 H 1.48503 * 109.47198 * 209.99968 * 18 16 14 21 21 H 1.48496 * 109.47217 * 330.00248 * 18 16 14 22 22 C 1.53782 * 113.69311 * 182.49086 * 8 7 5 23 23 C 1.40150 * 107.00937 * 0.25895 * 4 3 2 24 24 C 1.40172 * 133.58051 * 180.48657 * 23 4 3 25 25 C 1.36338 * 119.20498 * 179.58227 * 24 23 4 26 26 C 1.40390 * 119.55280 * 359.71306 * 25 24 23 27 27 C 1.35032 * 120.44525 * 359.97438 * 26 25 24 28 28 N 1.36246 * 125.08647 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.46859 * 89.97976 * 1 2 3 30 30 H 1.08998 * 109.47100 * 209.97407 * 1 2 3 31 31 H 1.08999 * 109.47281 * 329.97928 * 1 2 3 32 32 H 0.97001 * 119.99591 * 0.02562 * 7 5 4 33 33 H 1.08993 * 113.61512 * 334.65557 * 10 8 7 34 34 H 1.08995 * 113.61067 * 203.74790 * 10 8 7 35 35 H 0.97000 * 119.99440 * 22.41487 * 13 11 10 36 36 H 0.96995 * 120.00190 * 180.02562 * 17 16 14 37 37 H 1.08994 * 113.61358 * 156.32424 * 22 8 7 38 38 H 1.08999 * 113.61143 * 25.41864 * 22 8 7 39 39 H 1.08003 * 120.40112 * 359.29233 * 24 23 4 40 40 H 1.07992 * 120.22364 * 179.73244 * 25 24 23 41 41 H 1.07999 * 119.77895 * 180.02562 * 26 25 24 42 42 H 1.07997 * 119.70298 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2554 1.0652 0.0000 4 6 3.5561 0.7080 -0.0006 5 6 4.7065 1.6116 -0.0002 6 8 5.8368 1.1584 -0.0013 7 7 4.5155 2.9459 0.0013 8 6 5.6676 3.8508 0.0010 9 1 6.4303 3.5651 0.7254 10 6 6.2272 4.1352 -1.4029 11 6 5.2387 5.3111 -1.4729 12 1 5.6547 6.2040 -1.9395 13 7 3.9277 4.9443 -2.0143 14 6 3.1200 5.9050 -2.5619 15 1 3.4492 6.9331 -2.5943 16 6 1.8803 5.5565 -3.0801 17 7 1.1062 6.4789 -3.6114 18 14 1.3107 3.7783 -3.0236 19 1 0.5729 3.5350 -1.7580 20 1 0.4162 3.5081 -4.1778 21 1 2.4900 2.8784 -3.0900 22 6 5.2846 5.3388 0.0641 23 6 3.5965 -0.6929 -0.0070 24 6 4.6393 -1.6295 -0.0018 25 6 4.3390 -2.9594 -0.0024 26 6 2.9953 -3.3658 -0.0021 27 6 2.0033 -2.4497 -0.0006 28 7 2.2902 -1.1149 -0.0005 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3634 0.8898 0.5141 32 1 3.6152 3.3069 0.0025 33 1 6.0181 3.3455 -2.1245 34 1 7.2727 4.4432 -1.4019 35 1 3.6320 4.0210 -1.9850 36 1 0.2398 6.2355 -3.9732 37 1 6.0724 5.9758 0.4660 38 1 4.3145 5.5207 0.5266 39 1 5.6684 -1.3017 -0.0022 40 1 5.1295 -3.6952 -0.0028 41 1 2.7532 -4.4184 -0.0021 42 1 0.9737 -2.7757 -0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022427232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:59 Heat of formation + Delta-G solvation = 91.832406 kcal Electronic energy + Delta-G solvation = -26265.253161 eV Core-core repulsion = 22633.805390 eV Total energy + Delta-G solvation = -3631.447771 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.02560 -39.74967 -37.93097 -37.53010 -33.75256 -33.64178 -32.49892 -31.75202 -30.47798 -30.14733 -27.18208 -25.20192 -24.76908 -24.09238 -23.60207 -21.92546 -21.35397 -20.10762 -18.98357 -17.96234 -17.46734 -17.04900 -16.37817 -16.36009 -15.80521 -15.62468 -14.94407 -14.72017 -14.58368 -14.16649 -13.85829 -13.68320 -13.37526 -13.31208 -12.82740 -12.63199 -12.45238 -12.05393 -12.01177 -11.94308 -11.81219 -11.65267 -10.91374 -10.83527 -10.80677 -10.54142 -10.34562 -10.14425 -9.84609 -9.59458 -9.56852 -9.49589 -8.90299 -8.56945 -7.61718 -7.25286 -5.75432 -3.11241 0.42833 0.86629 2.24316 2.29267 3.04577 3.42680 3.47536 3.49114 3.53943 3.73002 4.09764 4.15984 4.38412 4.50561 4.62913 4.66345 4.79793 5.01404 5.12716 5.14871 5.20329 5.32884 5.34855 5.40567 5.47540 5.53964 5.67777 5.77029 5.80520 5.85258 5.96116 6.15314 6.19251 6.28729 6.29614 6.38728 6.58948 6.66287 6.79949 6.87825 7.04914 7.54523 7.96235 8.03283 8.44535 8.54137 9.23031 9.95899 10.15531 11.42329 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.005152 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.271012 B = 5433.899448 C = 7023.105473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.169 3.831 3 N -0.409 5.409 4 C -0.056 4.056 5 C 0.607 3.393 6 O -0.551 6.551 7 N -0.692 5.692 8 C 0.126 3.874 9 H 0.084 0.916 10 C -0.168 4.168 11 C 0.170 3.830 12 H 0.072 0.928 13 N -0.731 5.731 14 C -0.246 4.246 15 H 0.093 0.907 16 C 0.009 3.991 17 N -0.932 5.932 18 Si 0.876 3.124 19 H -0.272 1.272 20 H -0.294 1.294 21 H -0.279 1.279 22 C -0.177 4.177 23 C 0.073 3.927 24 C -0.064 4.064 25 C -0.119 4.119 26 C -0.133 4.133 27 C 0.050 3.950 28 N -0.363 5.363 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.412 0.588 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.364 0.636 36 H 0.259 0.741 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.160 0.840 40 H 0.141 0.859 41 H 0.150 0.850 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 -20.600 10.438 23.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.087 4.087 3 N -0.124 5.124 4 C -0.191 4.191 5 C 0.394 3.606 6 O -0.429 6.429 7 N -0.343 5.343 8 C 0.021 3.979 9 H 0.102 0.898 10 C -0.208 4.208 11 C 0.058 3.942 12 H 0.090 0.910 13 N -0.372 5.372 14 C -0.376 4.376 15 H 0.111 0.889 16 C -0.187 4.187 17 N -0.579 5.579 18 Si 0.706 3.294 19 H -0.198 1.198 20 H -0.220 1.220 21 H -0.206 1.206 22 C -0.218 4.218 23 C -0.039 4.039 24 C -0.084 4.084 25 C -0.140 4.140 26 C -0.154 4.154 27 C -0.072 4.072 28 N -0.034 5.034 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.250 0.750 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.198 0.802 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.177 0.823 40 H 0.159 0.841 41 H 0.168 0.832 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.116 -19.783 10.327 22.533 hybrid contribution -0.792 -1.992 -0.114 2.147 sum 2.323 -21.775 10.213 24.163 Atomic orbital electron populations 1.20237 0.83838 1.04351 1.04019 1.23389 0.95769 0.78724 1.10862 1.70112 1.01460 1.27424 1.13390 1.20557 0.91653 0.89698 1.17191 1.16441 0.86317 0.81716 0.76146 1.90759 1.23068 1.76947 1.52170 1.45621 1.10696 1.04805 1.73139 1.21796 0.88059 0.90033 0.98040 0.89829 1.23864 0.99698 1.00346 0.96914 1.21123 0.86200 0.95659 0.91193 0.91009 1.42650 1.15675 1.07489 1.71396 1.19117 0.96553 0.90860 1.31072 0.88924 1.24638 0.96906 0.96823 1.00370 1.69705 1.11365 1.31758 1.45111 0.86662 0.78722 0.86270 0.77795 1.19826 1.22040 1.20571 1.24115 1.02055 0.93307 1.02363 1.19248 0.84038 0.94239 1.06407 1.20820 0.99137 0.91171 0.97279 1.21203 0.96561 0.95865 1.00421 1.20890 0.92327 0.99890 1.02308 1.21667 1.01555 0.80315 1.03630 1.42897 1.07910 1.06482 1.46111 0.89881 0.90705 0.88415 0.75038 0.91457 0.89290 0.80188 0.93098 0.89399 0.90626 0.82268 0.84110 0.83194 0.81563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.32 36.01 0.37 -0.31 16 2 C 0.17 2.48 7.94 -154.57 -1.23 1.25 16 3 N -0.41 -7.46 10.90 -6.74 -0.07 -7.54 16 4 C -0.06 -1.03 7.05 -82.57 -0.58 -1.61 16 5 C 0.61 11.70 7.77 -13.02 -0.10 11.60 16 6 O -0.55 -10.99 15.69 5.12 0.08 -10.91 16 7 N -0.69 -13.09 4.33 -54.43 -0.24 -13.32 16 8 C 0.13 2.16 3.99 -67.12 -0.27 1.90 16 9 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 10 C -0.17 -2.97 7.62 -25.92 -0.20 -3.17 16 11 C 0.17 3.39 4.56 -67.11 -0.31 3.09 16 12 H 0.07 1.42 8.11 -51.93 -0.42 1.00 16 13 N -0.73 -17.93 4.83 -52.63 -0.25 -18.18 16 14 C -0.25 -7.07 10.46 -15.06 -0.16 -7.23 16 15 H 0.09 2.81 8.06 -52.49 -0.42 2.38 16 16 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 17 N -0.93 -29.60 13.97 55.49 0.78 -28.82 16 18 Si 0.88 23.07 27.74 -169.99 -4.72 18.35 16 19 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 21 H -0.28 -7.36 6.51 56.52 0.37 -6.99 16 22 C -0.18 -2.99 7.58 -25.92 -0.20 -3.19 16 23 C 0.07 1.12 6.72 -83.98 -0.56 0.56 16 24 C -0.06 -0.81 9.73 -39.54 -0.38 -1.19 16 25 C -0.12 -1.04 10.08 -39.46 -0.40 -1.44 16 26 C -0.13 -0.97 9.98 -39.91 -0.40 -1.36 16 27 C 0.05 0.43 10.77 -16.60 -0.18 0.25 16 28 N -0.36 -4.74 2.94 -57.93 -0.17 -4.92 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.50 7.98 -51.93 -0.41 0.08 16 31 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.41 8.26 7.53 -40.82 -0.31 7.95 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.36 9.06 4.22 -40.82 -0.17 8.89 16 36 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.08 1.38 8.13 -51.93 -0.42 0.96 16 39 H 0.16 2.02 7.17 -52.48 -0.38 1.65 16 40 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.17 0.81 7.94 -52.49 -0.42 0.39 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -36.36 353.53 -9.45 -45.81 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -5.50 Total: 14.90 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -4.68 Total: -0.71 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: 0.04 Total: -72.78 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.72 Total: 18.35 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.36 -9.45 -45.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022427232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.647 kcal (2) G-P(sol) polarization free energy of solvation -36.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds