Wall clock time and date at job start Tue Mar 31 2020 10:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30182 * 125.08947 * 2 1 4 4 C 1.34885 * 109.73781 * 179.97438 * 3 2 1 5 5 C 1.46285 * 126.49662 * 180.02562 * 4 3 2 6 6 O 1.21782 * 119.99630 * 179.97438 * 5 4 3 7 7 N 1.34773 * 120.00290 * 359.97150 * 5 4 3 8 8 C 1.46497 * 120.00005 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46858 * 180.02562 * 8 7 5 10 10 C 1.53950 * 113.74101 * 273.74146 * 9 8 7 11 11 N 1.47819 * 86.03497 * 222.08485 * 10 9 8 12 12 C 1.36932 * 134.45514 * 204.64516 * 11 10 9 13 13 H 1.08006 * 120.00319 * 179.87512 * 12 11 10 14 14 C 1.38817 * 120.00495 * 359.86736 * 12 11 10 15 15 N 1.31620 * 119.99440 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00512 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47166 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47225 * 119.99977 * 16 14 12 19 19 H 1.48503 * 109.47132 * 240.00161 * 16 14 12 20 20 C 1.47585 * 91.05042 * 24.55382 * 11 10 9 21 21 C 1.40146 * 107.00482 * 359.97438 * 4 3 2 22 22 C 1.40179 * 133.58135 * 180.02562 * 21 4 3 23 23 C 1.36329 * 119.20213 * 180.23647 * 22 21 4 24 24 C 1.40396 * 119.55752 * 359.46022 * 23 22 21 25 25 C 1.35025 * 120.44204 * 0.55167 * 24 23 22 26 26 N 1.36248 * 125.09178 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46705 * 90.02451 * 1 2 3 28 28 H 1.09002 * 109.46327 * 210.02256 * 1 2 3 29 29 H 1.08996 * 109.47269 * 330.02194 * 1 2 3 30 30 H 0.97006 * 119.99805 * 0.02562 * 7 5 4 31 31 H 1.08995 * 109.47552 * 300.00116 * 8 7 5 32 32 H 1.09004 * 109.47138 * 60.00805 * 8 7 5 33 33 H 1.08994 * 112.94880 * 45.33955 * 9 8 7 34 34 H 1.08992 * 113.77287 * 336.35103 * 10 9 8 35 35 H 1.09002 * 113.76673 * 107.75320 * 10 9 8 36 36 H 0.96998 * 120.00299 * 179.97438 * 15 14 12 37 37 H 1.09004 * 113.76373 * 221.15349 * 20 11 10 38 38 H 1.08993 * 113.77081 * 89.75448 * 20 11 10 39 39 H 1.08002 * 120.39536 * 359.95454 * 22 21 4 40 40 H 1.07995 * 120.22397 * 179.69638 * 23 22 21 41 41 H 1.08006 * 119.77900 * 180.26786 * 24 23 22 42 42 H 1.07999 * 119.70546 * 179.72997 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2554 1.0652 0.0000 4 6 3.5561 0.7081 0.0006 5 6 4.7065 1.6118 0.0013 6 8 5.8368 1.1585 0.0022 7 7 4.5155 2.9459 0.0008 8 6 5.6675 3.8508 0.0021 9 6 5.1775 5.3003 0.0019 10 6 4.8932 5.8582 -1.4044 11 7 5.5524 7.0952 -0.9350 12 6 5.4837 8.4145 -1.2953 13 1 6.0855 9.1475 -0.7784 14 6 4.6408 8.8100 -2.3248 15 7 3.9071 7.9168 -2.9544 16 14 4.5476 10.6096 -2.8167 17 1 5.4648 11.4047 -1.9613 18 1 4.9476 10.7552 -4.2393 19 1 3.1568 11.0995 -2.6409 20 6 6.3120 6.3380 0.0788 21 6 3.5966 -0.6928 0.0015 22 6 4.6395 -1.6294 0.0029 23 6 4.3392 -2.9592 -0.0013 24 6 2.9954 -3.3658 0.0046 25 6 2.0034 -2.4497 0.0031 26 7 2.2903 -1.1148 0.0005 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3632 -0.8898 0.5142 29 1 -0.3633 0.8901 0.5135 30 1 3.6151 3.3069 0.0004 31 1 6.2696 3.6714 0.8928 32 1 6.2717 3.6712 -0.8872 33 1 4.3724 5.4767 0.7151 34 1 5.4358 5.3454 -2.1985 35 1 3.8322 5.9801 -1.6225 36 1 3.3178 8.1931 -3.6736 37 1 6.3816 6.8423 1.0427 38 1 7.2723 5.9665 -0.2787 39 1 5.6685 -1.3015 0.0027 40 1 5.1296 -3.6950 -0.0053 41 1 2.7534 -4.4184 0.0056 42 1 0.9738 -2.7757 0.0033 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031845283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:40 Heat of formation + Delta-G solvation = 104.055643 kcal Electronic energy + Delta-G solvation = -24892.056338 eV Core-core repulsion = 21261.138606 eV Total energy + Delta-G solvation = -3630.917732 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.11243 -39.25512 -37.90765 -37.66390 -34.22337 -33.82817 -32.09853 -31.85470 -30.44861 -28.88561 -27.21389 -25.72879 -24.69902 -24.17901 -23.49642 -21.72544 -21.44340 -20.28568 -19.02761 -17.84676 -17.22199 -16.69353 -16.46807 -16.37884 -15.85029 -15.57059 -15.06448 -14.82483 -14.58951 -14.20087 -13.81304 -13.60331 -13.49219 -13.15098 -12.93348 -12.77958 -12.54252 -12.29519 -12.01086 -11.91508 -11.32800 -11.25265 -10.94851 -10.89969 -10.68839 -10.65867 -10.48025 -10.00814 -9.69640 -9.65765 -9.64173 -9.34638 -8.74179 -8.68098 -7.69890 -6.80485 -5.70155 -3.02200 0.35385 0.78955 2.15958 2.20765 2.97204 3.42896 3.46721 3.48576 3.50837 3.67500 3.99696 4.08276 4.29688 4.44374 4.51052 4.59386 4.72771 5.02256 5.05060 5.18899 5.24385 5.31248 5.43359 5.44871 5.46745 5.54107 5.71828 5.75536 5.90385 5.96092 6.09715 6.18684 6.21802 6.34807 6.45777 6.67012 6.75055 6.79019 6.88102 7.31330 7.43466 7.45015 7.63930 7.91299 8.04864 8.49841 9.11197 9.77325 10.67421 11.47012 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.023520 B = 0.002541 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.208304 B =11017.305547 C =11845.153160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.411 5.411 4 C -0.053 4.053 5 C 0.602 3.398 6 O -0.553 6.553 7 N -0.705 5.705 8 C 0.131 3.869 9 C -0.153 4.153 10 C 0.169 3.831 11 N -0.614 5.614 12 C -0.221 4.221 13 H 0.080 0.920 14 C -0.010 4.010 15 N -0.921 5.921 16 Si 0.911 3.089 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.290 1.290 20 C 0.129 3.871 21 C 0.072 3.928 22 C -0.064 4.064 23 C -0.119 4.119 24 C -0.132 4.132 25 C 0.048 3.952 26 N -0.363 5.363 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.410 0.590 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.252 0.748 37 H 0.045 0.955 38 H 0.036 0.964 39 H 0.160 0.840 40 H 0.141 0.859 41 H 0.150 0.850 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.562 -26.244 7.820 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.090 4.090 3 N -0.127 5.127 4 C -0.187 4.187 5 C 0.389 3.611 6 O -0.432 6.432 7 N -0.355 5.355 8 C 0.007 3.993 9 C -0.173 4.173 10 C 0.044 3.956 11 N -0.340 5.340 12 C -0.348 4.348 13 H 0.098 0.902 14 C -0.207 4.207 15 N -0.568 5.568 16 Si 0.742 3.258 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.217 1.217 20 C 0.002 3.998 21 C -0.040 4.040 22 C -0.084 4.084 23 C -0.141 4.141 24 C -0.152 4.152 25 C -0.074 4.074 26 N -0.034 5.034 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.115 0.885 30 H 0.245 0.755 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.045 0.955 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.178 0.822 40 H 0.159 0.841 41 H 0.168 0.832 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.292 -25.349 7.631 27.210 hybrid contribution -0.226 0.240 -0.496 0.595 sum -6.517 -25.108 7.135 26.904 Atomic orbital electron populations 1.20204 0.83823 1.04303 1.03861 1.23368 0.95724 0.78802 1.11071 1.70056 1.01453 1.27416 1.13769 1.20573 0.91610 0.89650 1.16913 1.16469 0.86264 0.81872 0.76533 1.90784 1.23189 1.76969 1.52284 1.45818 1.11304 1.05044 1.73314 1.21473 0.87618 0.88420 1.01761 1.23796 1.00269 0.90959 1.02249 1.22350 0.99173 0.84168 0.89930 1.45999 1.47034 1.02229 1.38729 1.19075 1.20356 0.81612 1.13789 0.90240 1.24792 0.99554 0.97805 0.98515 1.69833 1.29495 1.31797 1.25688 0.86050 0.77345 0.84343 0.78058 1.20496 1.21817 1.21746 1.22489 0.93501 0.90308 0.93485 1.19278 0.83998 0.94334 1.06439 1.20845 0.99240 0.91182 0.97111 1.21219 0.96579 0.95928 1.00350 1.20908 0.92347 0.99940 1.02048 1.21650 1.01512 0.80319 1.03884 1.42868 1.07926 1.06481 1.46115 0.89901 0.90873 0.88518 0.75501 0.91858 0.91305 0.89164 0.95490 0.90936 0.93762 0.93692 0.94636 0.82212 0.84089 0.83193 0.81581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.32 36.01 0.37 -0.06 16 2 C 0.17 1.90 7.94 -154.56 -1.23 0.67 16 3 N -0.41 -6.01 10.90 -6.74 -0.07 -6.08 16 4 C -0.05 -0.82 7.05 -82.58 -0.58 -1.40 16 5 C 0.60 10.38 7.77 -13.03 -0.10 10.28 16 6 O -0.55 -10.46 15.75 5.12 0.08 -10.38 16 7 N -0.71 -11.73 5.55 -61.73 -0.34 -12.07 16 8 C 0.13 2.24 5.51 -4.04 -0.02 2.22 16 9 C -0.15 -2.93 3.93 -89.69 -0.35 -3.29 16 10 C 0.17 4.09 7.08 -2.83 -0.02 4.07 16 11 N -0.61 -16.29 3.70 -177.67 -0.66 -16.95 16 12 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 13 H 0.08 2.22 7.83 -52.48 -0.41 1.80 16 14 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 15 N -0.92 -28.01 11.39 55.49 0.63 -27.38 16 16 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 C 0.13 2.71 8.51 -2.96 -0.03 2.68 16 21 C 0.07 0.95 6.72 -83.98 -0.56 0.39 16 22 C -0.06 -0.70 9.73 -39.54 -0.38 -1.09 16 23 C -0.12 -0.89 10.08 -39.46 -0.40 -1.28 16 24 C -0.13 -0.76 9.98 -39.91 -0.40 -1.15 16 25 C 0.05 0.32 10.77 -16.60 -0.18 0.14 16 26 N -0.36 -3.88 2.94 -57.93 -0.17 -4.05 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.30 7.98 -51.93 -0.41 -0.12 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.41 6.58 8.17 -40.82 -0.33 6.24 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.25 7.88 -51.93 -0.41 0.84 16 33 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 34 H 0.03 0.68 7.92 -51.93 -0.41 0.27 16 35 H 0.07 1.93 7.16 -51.93 -0.37 1.56 16 36 H 0.25 7.41 8.31 -40.82 -0.34 7.08 16 37 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.04 0.72 8.10 -51.93 -0.42 0.30 16 39 H 0.16 1.83 7.17 -52.49 -0.38 1.45 16 40 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.15 0.34 8.06 -52.48 -0.42 -0.08 16 42 H 0.17 0.49 7.94 -52.49 -0.42 0.07 16 LS Contribution 358.00 15.07 5.39 5.39 Total: -1.00 -36.38 358.00 -9.96 -46.34 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.66 Total: 2.27 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -4.14 Total: 5.25 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: -0.61 Total: -66.52 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.38 -9.96 -46.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031845283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.397 kcal (2) G-P(sol) polarization free energy of solvation -36.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds