Wall clock time and date at job start Tue Mar 31 2020 10:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30182 * 125.08947 * 2 1 4 4 C 1.34885 * 109.73781 * 179.97438 * 3 2 1 5 5 C 1.46285 * 126.49662 * 180.02562 * 4 3 2 6 6 O 1.21782 * 119.99630 * 179.97438 * 5 4 3 7 7 N 1.34773 * 120.00290 * 359.97150 * 5 4 3 8 8 C 1.46497 * 120.00005 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46858 * 180.02562 * 8 7 5 10 10 C 1.53950 * 113.74101 * 273.74146 * 9 8 7 11 11 N 1.47819 * 86.03497 * 222.08485 * 10 9 8 12 12 C 1.36932 * 134.45514 * 204.64516 * 11 10 9 13 13 H 1.08006 * 120.00319 * 179.87512 * 12 11 10 14 14 C 1.38817 * 120.00495 * 359.86736 * 12 11 10 15 15 N 1.31620 * 119.99440 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00512 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47166 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47225 * 119.99977 * 16 14 12 19 19 H 1.48503 * 109.47132 * 240.00161 * 16 14 12 20 20 C 1.47585 * 91.05042 * 24.55382 * 11 10 9 21 21 C 1.40146 * 107.00482 * 359.97438 * 4 3 2 22 22 C 1.40179 * 133.58135 * 180.02562 * 21 4 3 23 23 C 1.36329 * 119.20213 * 180.23647 * 22 21 4 24 24 C 1.40396 * 119.55752 * 359.46022 * 23 22 21 25 25 C 1.35025 * 120.44204 * 0.55167 * 24 23 22 26 26 N 1.36248 * 125.09178 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46705 * 90.02451 * 1 2 3 28 28 H 1.09002 * 109.46327 * 210.02256 * 1 2 3 29 29 H 1.08996 * 109.47269 * 330.02194 * 1 2 3 30 30 H 0.97006 * 119.99805 * 0.02562 * 7 5 4 31 31 H 1.08995 * 109.47552 * 300.00116 * 8 7 5 32 32 H 1.09004 * 109.47138 * 60.00805 * 8 7 5 33 33 H 1.08994 * 112.94880 * 45.33955 * 9 8 7 34 34 H 1.08992 * 113.77287 * 336.35103 * 10 9 8 35 35 H 1.09002 * 113.76673 * 107.75320 * 10 9 8 36 36 H 0.96998 * 120.00299 * 179.97438 * 15 14 12 37 37 H 1.09004 * 113.76373 * 221.15349 * 20 11 10 38 38 H 1.08993 * 113.77081 * 89.75448 * 20 11 10 39 39 H 1.08002 * 120.39536 * 359.95454 * 22 21 4 40 40 H 1.07995 * 120.22397 * 179.69638 * 23 22 21 41 41 H 1.08006 * 119.77900 * 180.26786 * 24 23 22 42 42 H 1.07999 * 119.70546 * 179.72997 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2554 1.0652 0.0000 4 6 3.5561 0.7081 0.0006 5 6 4.7065 1.6118 0.0013 6 8 5.8368 1.1585 0.0022 7 7 4.5155 2.9459 0.0008 8 6 5.6675 3.8508 0.0021 9 6 5.1775 5.3003 0.0019 10 6 4.8932 5.8582 -1.4044 11 7 5.5524 7.0952 -0.9350 12 6 5.4837 8.4145 -1.2953 13 1 6.0855 9.1475 -0.7784 14 6 4.6408 8.8100 -2.3248 15 7 3.9071 7.9168 -2.9544 16 14 4.5476 10.6096 -2.8167 17 1 5.4648 11.4047 -1.9613 18 1 4.9476 10.7552 -4.2393 19 1 3.1568 11.0995 -2.6409 20 6 6.3120 6.3380 0.0788 21 6 3.5966 -0.6928 0.0015 22 6 4.6395 -1.6294 0.0029 23 6 4.3392 -2.9592 -0.0013 24 6 2.9954 -3.3658 0.0046 25 6 2.0034 -2.4497 0.0031 26 7 2.2903 -1.1148 0.0005 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3632 -0.8898 0.5142 29 1 -0.3633 0.8901 0.5135 30 1 3.6151 3.3069 0.0004 31 1 6.2696 3.6714 0.8928 32 1 6.2717 3.6712 -0.8872 33 1 4.3724 5.4767 0.7151 34 1 5.4358 5.3454 -2.1985 35 1 3.8322 5.9801 -1.6225 36 1 3.3178 8.1931 -3.6736 37 1 6.3816 6.8423 1.0427 38 1 7.2723 5.9665 -0.2787 39 1 5.6685 -1.3015 0.0027 40 1 5.1296 -3.6950 -0.0053 41 1 2.7534 -4.4184 0.0056 42 1 0.9738 -2.7757 0.0033 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031845283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:40 Heat of formation + Delta-G solvation = 79.488018 kcal Electronic energy + Delta-G solvation = -24893.121670 eV Core-core repulsion = 21261.138606 eV Total energy + Delta-G solvation = -3631.983064 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.91699 -40.63296 -39.54129 -38.48626 -35.70876 -34.62859 -34.14775 -32.54962 -31.24088 -30.50488 -28.40601 -27.17745 -26.55108 -24.93139 -24.65732 -23.40158 -22.18293 -21.54657 -20.63305 -18.93203 -18.70818 -18.00247 -17.34553 -17.31231 -16.97502 -16.85586 -16.45755 -16.14963 -15.75867 -15.65735 -15.25628 -14.82511 -14.55730 -14.30736 -14.04085 -14.01992 -13.43928 -13.32044 -13.12166 -13.08223 -12.89740 -12.68820 -12.60057 -12.52757 -12.23220 -11.83431 -11.69714 -11.63620 -11.59218 -11.31231 -11.04428 -10.87956 -10.39735 -10.07567 -8.93128 -8.50330 -7.90438 -5.24668 -0.37184 0.07330 1.20998 1.42562 1.44602 1.46546 1.56864 2.24404 2.27218 2.47231 2.57719 3.21348 3.29915 3.38087 3.43666 3.68455 3.73397 3.79261 3.92385 4.03834 4.17230 4.18153 4.34508 4.54431 4.58249 4.72157 4.73422 4.75708 4.82592 4.84327 4.86135 5.01240 5.08295 5.13483 5.24097 5.24909 5.30333 5.42433 5.52671 5.55519 5.63005 5.92610 6.11231 6.42999 6.73382 6.91028 7.21509 7.60041 8.56202 9.26769 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.023520 B = 0.002541 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.208304 B =11017.305547 C =11845.153160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.164 3.836 3 N -0.445 5.445 4 C -0.118 4.118 5 C 0.600 3.400 6 O -0.582 6.582 7 N -0.707 5.707 8 C 0.144 3.856 9 C -0.117 4.117 10 C 0.167 3.833 11 N -0.645 5.645 12 C -0.234 4.234 13 H 0.086 0.914 14 C -0.073 4.073 15 N -0.955 5.955 16 Si 0.983 3.017 17 H -0.263 1.263 18 H -0.293 1.293 19 H -0.290 1.290 20 C 0.130 3.870 21 C 0.075 3.925 22 C -0.119 4.119 23 C -0.080 4.080 24 C -0.131 4.131 25 C 0.051 3.949 26 N -0.364 5.364 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.411 0.589 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.011 0.989 35 H 0.041 0.959 36 H 0.248 0.752 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.141 0.859 40 H 0.173 0.827 41 H 0.200 0.800 42 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.843 -29.232 8.906 31.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.094 4.094 3 N -0.161 5.161 4 C -0.249 4.249 5 C 0.389 3.611 6 O -0.464 6.464 7 N -0.357 5.357 8 C 0.020 3.980 9 C -0.137 4.137 10 C 0.042 3.958 11 N -0.372 5.372 12 C -0.363 4.363 13 H 0.104 0.896 14 C -0.265 4.265 15 N -0.604 5.604 16 Si 0.811 3.189 17 H -0.188 1.188 18 H -0.221 1.221 19 H -0.217 1.217 20 C 0.005 3.995 21 C -0.040 4.040 22 C -0.138 4.138 23 C -0.101 4.101 24 C -0.151 4.151 25 C -0.070 4.070 26 N -0.035 5.035 27 H 0.112 0.888 28 H 0.127 0.873 29 H 0.111 0.889 30 H 0.246 0.754 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.029 0.971 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.159 0.841 40 H 0.191 0.809 41 H 0.217 0.783 42 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -7.552 -28.328 8.750 30.595 hybrid contribution 0.129 0.849 -0.816 1.185 sum -7.424 -27.478 7.934 29.549 Atomic orbital electron populations 1.20415 0.80561 1.05889 1.05027 1.24191 0.97238 0.78402 1.09594 1.69928 1.01496 1.29573 1.15120 1.20278 0.91494 0.90635 1.22542 1.16785 0.86764 0.81946 0.75635 1.90734 1.24390 1.77376 1.53917 1.45760 1.11014 1.05137 1.73760 1.21243 0.87787 0.87127 1.01863 1.23409 0.99708 0.91876 0.98703 1.22226 0.96900 0.84365 0.92353 1.46413 1.48513 1.02210 1.40031 1.19507 1.19963 0.83131 1.13675 0.89624 1.25709 0.99615 1.02293 0.98895 1.70039 1.30376 1.33812 1.26200 0.84948 0.77353 0.79234 0.77414 1.18765 1.22061 1.21691 1.22681 0.93994 0.89863 0.92998 1.19465 0.85793 0.93898 1.04836 1.20819 0.98135 0.92709 1.02179 1.21765 0.98798 0.94718 0.94854 1.21536 0.90931 1.02167 1.00423 1.22686 1.04341 0.78480 1.01477 1.43108 1.06682 1.07977 1.45702 0.88796 0.87319 0.88880 0.75385 0.90267 0.92623 0.88286 0.97109 0.94082 0.94326 0.91705 0.93208 0.84135 0.80914 0.78343 0.76975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.68 10.32 71.24 0.74 0.06 16 2 C 0.16 3.61 7.94 137.83 1.09 4.71 16 3 N -0.45 -13.67 10.90 -175.24 -1.91 -15.58 16 4 C -0.12 -3.94 7.05 41.23 0.29 -3.65 16 5 C 0.60 22.34 7.77 86.34 0.67 23.01 16 6 O -0.58 -23.71 15.75 -4.61 -0.07 -23.78 16 7 N -0.71 -25.13 5.55 -467.41 -2.59 -27.73 16 8 C 0.14 5.10 5.51 86.38 0.48 5.58 16 9 C -0.12 -4.60 3.93 -10.13 -0.04 -4.64 16 10 C 0.17 8.49 7.08 86.44 0.61 9.10 16 11 N -0.65 -34.97 3.70 -716.03 -2.65 -37.62 16 12 C -0.23 -13.75 10.70 84.04 0.90 -12.85 16 13 H 0.09 4.77 7.83 -2.91 -0.02 4.74 16 14 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 15 N -0.96 -60.23 11.39 21.65 0.25 -59.98 16 16 Si 0.98 47.40 29.55 68.60 2.03 49.43 16 17 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 20 C 0.13 5.43 8.51 86.49 0.74 6.16 16 21 C 0.07 2.02 6.72 39.23 0.26 2.29 16 22 C -0.12 -2.62 9.73 22.30 0.22 -2.41 16 23 C -0.08 -0.93 10.08 22.35 0.23 -0.70 16 24 C -0.13 -0.82 9.98 22.06 0.22 -0.60 16 25 C 0.05 0.46 10.77 83.22 0.90 1.35 16 26 N -0.36 -7.17 2.94 -337.19 -0.99 -8.16 16 27 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.11 0.41 7.98 -2.39 -0.02 0.39 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.41 14.24 8.17 -92.70 -0.76 13.48 16 31 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.06 2.13 7.88 -2.38 -0.02 2.11 16 33 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 34 H 0.01 0.59 7.92 -2.39 -0.02 0.57 16 35 H 0.04 2.32 7.16 -2.39 -0.02 2.31 16 36 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 37 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 38 H 0.05 1.98 8.10 -2.39 -0.02 1.96 16 39 H 0.14 3.54 7.17 -2.91 -0.02 3.51 16 40 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 41 H 0.20 -0.59 8.06 -2.91 -0.02 -0.61 16 42 H 0.21 -0.15 7.94 -2.91 -0.02 -0.17 16 Total: -1.00 -85.53 358.00 2.11 -83.42 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.29 Total: 16.43 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: 7.76 Total: 23.57 kcal Atomic # 7 Polarization: -141.17 SS G_CDS: -7.90 Total: -149.07 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.07 Total: -23.78 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -85.53 2.11 -83.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031845283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.908 kcal (2) G-P(sol) polarization free energy of solvation -85.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds