Wall clock time and date at job start Tue Mar 31 2020 10:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30228 * 124.92363 * 2 1 4 4 C 1.35549 * 109.70171 * 179.97438 * 3 2 1 5 5 C 1.40017 * 133.40476 * 180.02562 * 4 3 2 6 6 C 1.36186 * 120.08022 * 179.97438 * 5 4 3 7 7 C 1.40175 * 120.51931 * 0.02562 * 6 5 4 8 8 C 1.47611 * 119.93384 * 179.97438 * 7 6 5 9 9 O 1.21593 * 119.99352 * 179.97438 * 8 7 6 10 10 N 1.34778 * 120.00274 * 359.97438 * 8 7 6 11 11 C 1.46494 * 119.99683 * 180.27570 * 10 8 7 12 12 C 1.53008 * 109.46915 * 179.72886 * 11 10 8 13 13 C 1.53947 * 113.74029 * 273.74211 * 12 11 10 14 14 N 1.47808 * 86.03331 * 222.08338 * 13 12 11 15 15 C 1.36948 * 134.45067 * 204.64362 * 14 13 12 16 16 H 1.07999 * 119.99315 * 173.35065 * 15 14 13 17 17 C 1.38810 * 120.00158 * 353.35330 * 15 14 13 18 18 N 1.31614 * 120.00257 * 5.06287 * 17 15 14 19 19 Si 1.86796 * 119.99558 * 185.06355 * 17 15 14 20 20 H 1.48503 * 109.47471 * 94.98980 * 19 17 15 21 21 H 1.48505 * 109.46728 * 214.98528 * 19 17 15 22 22 H 1.48498 * 109.47404 * 334.98290 * 19 17 15 23 23 C 1.47575 * 91.05524 * 24.55489 * 14 13 12 24 24 C 1.39370 * 120.12790 * 0.22761 * 7 6 5 25 25 C 1.38418 * 119.56658 * 359.49424 * 24 7 6 26 26 N 1.35850 * 124.92581 * 179.97438 * 2 1 3 27 27 H 0.97001 * 126.36417 * 359.97438 * 26 2 1 28 28 H 1.09000 * 109.46954 * 89.97683 * 1 2 3 29 29 H 1.09004 * 109.47481 * 209.97792 * 1 2 3 30 30 H 1.09003 * 109.47535 * 329.97949 * 1 2 3 31 31 H 1.07997 * 119.96178 * 359.94361 * 5 4 3 32 32 H 1.08001 * 119.74382 * 179.97438 * 6 5 4 33 33 H 0.96998 * 119.99782 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.47642 * 299.73309 * 11 10 8 35 35 H 1.09008 * 109.47265 * 59.73411 * 11 10 8 36 36 H 1.09002 * 112.94017 * 45.33394 * 12 11 10 37 37 H 1.08999 * 113.76922 * 336.35409 * 13 12 11 38 38 H 1.09008 * 113.76692 * 107.74610 * 13 12 11 39 39 H 0.96995 * 120.00299 * 180.02562 * 18 17 15 40 40 H 1.09000 * 113.76747 * 221.15317 * 23 14 13 41 41 H 1.08992 * 113.76891 * 89.75010 * 23 14 13 42 42 H 1.07997 * 120.21767 * 179.72643 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2525 1.0678 0.0000 4 6 3.5605 0.7119 0.0006 5 6 4.7559 1.4408 0.0013 6 6 5.9522 0.7900 0.0023 7 6 6.0005 -0.6109 0.0021 8 6 7.3043 -1.3030 0.0026 9 8 7.3474 -2.5182 0.0028 10 7 8.4468 -0.5881 0.0027 11 6 9.7407 -1.2751 -0.0029 12 6 10.8676 -0.2401 -0.0083 13 6 11.2555 0.2464 -1.4164 14 7 12.6557 0.1444 -0.9541 15 6 13.8325 0.7416 -1.3202 16 1 14.7283 0.5689 -0.7421 17 6 13.8739 1.5689 -2.4340 18 7 12.7644 1.8593 -3.0797 19 14 15.5043 2.2701 -3.0164 20 1 16.0651 1.4004 -4.0815 21 1 15.2909 3.6374 -3.5552 22 1 16.4531 2.3302 -1.8756 23 6 12.2762 -0.8573 0.0611 24 6 4.8199 -1.3515 -0.0040 25 6 3.6015 -0.6946 0.0009 26 7 2.2848 -1.1138 0.0005 27 1 1.9736 -2.0326 0.0013 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3634 0.8898 0.5142 31 1 4.7293 2.5204 0.0005 32 1 6.8710 1.3577 0.0024 33 1 8.4123 0.3813 0.0029 34 1 9.8247 -1.8991 0.8869 35 1 9.8167 -1.8995 -0.8931 36 1 10.7064 0.5673 0.7061 37 1 11.0022 -0.4570 -2.2095 38 1 10.9361 1.2660 -1.6324 39 1 12.7933 2.4371 -3.8582 40 1 12.7703 -0.7172 1.0225 41 1 12.3235 -1.8855 -0.2972 42 1 4.8554 -2.4309 -0.0086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032077621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:02 Heat of formation + Delta-G solvation = 87.489604 kcal Electronic energy + Delta-G solvation = -24428.280104 eV Core-core repulsion = 20796.644015 eV Total energy + Delta-G solvation = -3631.636089 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.48662 -39.83140 -38.06736 -37.06423 -34.47620 -33.49875 -32.25713 -31.77758 -30.32544 -29.25393 -27.89538 -25.76518 -24.78629 -23.41260 -22.73530 -21.82769 -21.26680 -20.58771 -19.24020 -18.26244 -17.55288 -16.83103 -16.53122 -15.95547 -15.91196 -15.24643 -14.87993 -14.73769 -14.31138 -14.17131 -13.87832 -13.60691 -13.52225 -13.38266 -13.27681 -12.89920 -12.75052 -12.36034 -11.82362 -11.74594 -11.41991 -11.32499 -11.00978 -10.98068 -10.73040 -10.56394 -10.33242 -10.06574 -9.78484 -9.73098 -9.42546 -8.88451 -8.78685 -8.70733 -8.37353 -6.86285 -5.78214 -3.09279 0.39206 1.15603 2.21279 2.43748 3.01591 3.31279 3.39621 3.44842 3.46725 3.71259 3.76181 4.23258 4.45941 4.67305 4.68772 4.76555 4.93657 4.99855 5.05446 5.11474 5.17212 5.28106 5.33017 5.33791 5.39875 5.66508 5.78692 5.83779 5.99279 6.07650 6.12879 6.16655 6.25721 6.36443 6.47581 6.56884 6.65609 6.75547 6.92569 7.22093 7.34545 7.50574 7.55873 7.64488 7.97862 8.30396 9.04727 9.70835 10.60743 11.39649 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.026610 B = 0.002237 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.971296 B =12514.244080 C =13282.598515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.288 3.712 3 N -0.495 5.495 4 C 0.071 3.929 5 C -0.071 4.071 6 C -0.093 4.093 7 C -0.116 4.116 8 C 0.558 3.442 9 O -0.546 6.546 10 N -0.714 5.714 11 C 0.130 3.870 12 C -0.155 4.155 13 C 0.171 3.829 14 N -0.613 5.613 15 C -0.224 4.224 16 H 0.080 0.920 17 C -0.008 4.008 18 N -0.920 5.920 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.128 3.872 24 C -0.044 4.044 25 C 0.032 3.968 26 N -0.595 5.595 27 H 0.424 0.576 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.402 0.598 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.029 0.971 38 H 0.068 0.932 39 H 0.254 0.746 40 H 0.045 0.955 41 H 0.036 0.964 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.195 -4.710 8.030 26.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.021 3.979 3 N -0.217 5.217 4 C -0.048 4.048 5 C -0.091 4.091 6 C -0.114 4.114 7 C -0.121 4.121 8 C 0.345 3.655 9 O -0.425 6.425 10 N -0.365 5.365 11 C 0.006 3.994 12 C -0.175 4.175 13 C 0.046 3.954 14 N -0.339 5.339 15 C -0.351 4.351 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.567 5.567 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.002 3.998 24 C -0.065 4.065 25 C -0.077 4.077 26 N -0.207 5.207 27 H 0.263 0.737 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.238 0.762 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -25.151 -4.474 7.836 26.720 hybrid contribution 1.041 -0.514 -0.556 1.287 sum -24.110 -4.988 7.280 25.674 Atomic orbital electron populations 1.20411 0.83985 1.04857 1.04445 1.23698 0.95818 0.81014 0.97348 1.70414 1.00937 1.27494 1.22834 1.19229 0.92103 0.90230 1.03287 1.19934 0.88656 1.00197 1.00301 1.20825 0.98214 0.92932 0.99451 1.19643 0.92820 0.93544 1.06048 1.18051 0.83820 0.86915 0.76691 1.90764 1.87697 1.13466 1.50601 1.45962 1.05829 1.10625 1.74037 1.21494 0.80632 0.95319 1.01937 1.23837 0.93393 0.97971 1.02250 1.22299 0.83591 0.99646 0.89873 1.45970 1.04669 1.43822 1.39461 1.19033 0.86528 1.21682 1.07890 0.90212 1.24822 0.97295 1.00703 0.97627 1.69822 1.25117 1.40128 1.21584 0.86133 0.83014 0.78115 0.78733 1.21647 1.21702 1.20547 1.22490 0.90610 0.93143 0.93596 1.19976 0.87748 1.00249 0.98574 1.18701 0.85313 0.95344 1.08313 1.43012 1.04780 1.09998 1.62944 0.73687 0.89143 0.90060 0.88350 0.84510 0.84480 0.76195 0.91755 0.91203 0.89151 0.95278 0.91355 0.93627 0.93675 0.94634 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.51 36.01 0.38 0.10 16 2 C 0.29 2.39 8.07 -154.90 -1.25 1.14 16 3 N -0.50 -5.83 11.27 -8.19 -0.09 -5.92 16 4 C 0.07 0.87 7.23 -84.62 -0.61 0.26 16 5 C -0.07 -0.79 10.03 -39.65 -0.40 -1.19 16 6 C -0.09 -1.00 9.46 -39.59 -0.37 -1.38 16 7 C -0.12 -1.45 5.88 -104.92 -0.62 -2.06 16 8 C 0.56 8.22 7.76 -12.44 -0.10 8.12 16 9 O -0.55 -9.73 16.33 5.28 0.09 -9.65 16 10 N -0.71 -9.83 5.50 -61.32 -0.34 -10.17 16 11 C 0.13 2.00 5.51 -4.04 -0.02 1.98 16 12 C -0.15 -2.71 3.93 -89.69 -0.35 -3.07 16 13 C 0.17 3.90 6.99 -2.84 -0.02 3.88 16 14 N -0.61 -15.63 3.70 -177.73 -0.66 -16.29 16 15 C -0.22 -6.29 10.70 -15.05 -0.16 -6.45 16 16 H 0.08 2.17 7.83 -52.49 -0.41 1.75 16 17 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 18 N -0.92 -27.23 11.51 55.49 0.64 -26.59 16 19 Si 0.91 22.17 29.56 -169.99 -5.02 17.15 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.13 2.56 8.51 -2.97 -0.03 2.54 16 24 C -0.04 -0.51 9.61 -39.09 -0.38 -0.89 16 25 C 0.03 0.36 7.29 -84.00 -0.61 -0.26 16 26 N -0.60 -4.65 6.23 -8.04 -0.05 -4.70 16 27 H 0.42 1.80 8.96 -40.82 -0.37 1.43 16 28 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 32 H 0.14 1.20 6.36 -52.49 -0.33 0.86 16 33 H 0.40 4.72 6.47 -40.82 -0.26 4.46 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.18 7.88 -51.92 -0.41 0.77 16 36 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.03 0.70 7.92 -51.93 -0.41 0.29 16 38 H 0.07 1.69 7.37 -51.92 -0.38 1.31 16 39 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.14 1.53 7.64 -52.49 -0.40 1.12 16 LS Contribution 356.14 15.07 5.37 5.37 Total: -1.00 -36.29 356.14 -10.20 -46.49 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.49 Total: 1.91 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -4.63 Total: 2.41 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: -0.50 Total: -63.67 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.29 -10.20 -46.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032077621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.977 kcal (2) G-P(sol) polarization free energy of solvation -36.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds