Wall clock time and date at job start Tue Mar 31 2020 10:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30228 * 124.92363 * 2 1 4 4 C 1.35549 * 109.70171 * 179.97438 * 3 2 1 5 5 C 1.40017 * 133.40476 * 180.02562 * 4 3 2 6 6 C 1.36186 * 120.08022 * 179.97438 * 5 4 3 7 7 C 1.40175 * 120.51931 * 0.02562 * 6 5 4 8 8 C 1.47611 * 119.93384 * 179.97438 * 7 6 5 9 9 O 1.21593 * 119.99352 * 179.97438 * 8 7 6 10 10 N 1.34778 * 120.00274 * 359.97438 * 8 7 6 11 11 C 1.46494 * 119.99683 * 180.27570 * 10 8 7 12 12 C 1.53008 * 109.46915 * 179.72886 * 11 10 8 13 13 C 1.53947 * 113.74029 * 273.74211 * 12 11 10 14 14 N 1.47808 * 86.03331 * 222.08338 * 13 12 11 15 15 C 1.36948 * 134.45067 * 204.64362 * 14 13 12 16 16 H 1.07999 * 119.99315 * 173.35065 * 15 14 13 17 17 C 1.38810 * 120.00158 * 353.35330 * 15 14 13 18 18 N 1.31614 * 120.00257 * 5.06287 * 17 15 14 19 19 Si 1.86796 * 119.99558 * 185.06355 * 17 15 14 20 20 H 1.48503 * 109.47471 * 94.98980 * 19 17 15 21 21 H 1.48505 * 109.46728 * 214.98528 * 19 17 15 22 22 H 1.48498 * 109.47404 * 334.98290 * 19 17 15 23 23 C 1.47575 * 91.05524 * 24.55489 * 14 13 12 24 24 C 1.39370 * 120.12790 * 0.22761 * 7 6 5 25 25 C 1.38418 * 119.56658 * 359.49424 * 24 7 6 26 26 N 1.35850 * 124.92581 * 179.97438 * 2 1 3 27 27 H 0.97001 * 126.36417 * 359.97438 * 26 2 1 28 28 H 1.09000 * 109.46954 * 89.97683 * 1 2 3 29 29 H 1.09004 * 109.47481 * 209.97792 * 1 2 3 30 30 H 1.09003 * 109.47535 * 329.97949 * 1 2 3 31 31 H 1.07997 * 119.96178 * 359.94361 * 5 4 3 32 32 H 1.08001 * 119.74382 * 179.97438 * 6 5 4 33 33 H 0.96998 * 119.99782 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.47642 * 299.73309 * 11 10 8 35 35 H 1.09008 * 109.47265 * 59.73411 * 11 10 8 36 36 H 1.09002 * 112.94017 * 45.33394 * 12 11 10 37 37 H 1.08999 * 113.76922 * 336.35409 * 13 12 11 38 38 H 1.09008 * 113.76692 * 107.74610 * 13 12 11 39 39 H 0.96995 * 120.00299 * 180.02562 * 18 17 15 40 40 H 1.09000 * 113.76747 * 221.15317 * 23 14 13 41 41 H 1.08992 * 113.76891 * 89.75010 * 23 14 13 42 42 H 1.07997 * 120.21767 * 179.72643 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2525 1.0678 0.0000 4 6 3.5605 0.7119 0.0006 5 6 4.7559 1.4408 0.0013 6 6 5.9522 0.7900 0.0023 7 6 6.0005 -0.6109 0.0021 8 6 7.3043 -1.3030 0.0026 9 8 7.3474 -2.5182 0.0028 10 7 8.4468 -0.5881 0.0027 11 6 9.7407 -1.2751 -0.0029 12 6 10.8676 -0.2401 -0.0083 13 6 11.2555 0.2464 -1.4164 14 7 12.6557 0.1444 -0.9541 15 6 13.8325 0.7416 -1.3202 16 1 14.7283 0.5689 -0.7421 17 6 13.8739 1.5689 -2.4340 18 7 12.7644 1.8593 -3.0797 19 14 15.5043 2.2701 -3.0164 20 1 16.0651 1.4004 -4.0815 21 1 15.2909 3.6374 -3.5552 22 1 16.4531 2.3302 -1.8756 23 6 12.2762 -0.8573 0.0611 24 6 4.8199 -1.3515 -0.0040 25 6 3.6015 -0.6946 0.0009 26 7 2.2848 -1.1138 0.0005 27 1 1.9736 -2.0326 0.0013 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3634 0.8898 0.5142 31 1 4.7293 2.5204 0.0005 32 1 6.8710 1.3577 0.0024 33 1 8.4123 0.3813 0.0029 34 1 9.8247 -1.8991 0.8869 35 1 9.8167 -1.8995 -0.8931 36 1 10.7064 0.5673 0.7061 37 1 11.0022 -0.4570 -2.2095 38 1 10.9361 1.2660 -1.6324 39 1 12.7933 2.4371 -3.8582 40 1 12.7703 -0.7172 1.0225 41 1 12.3235 -1.8855 -0.2972 42 1 4.8554 -2.4309 -0.0086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032077621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:01 Heat of formation + Delta-G solvation = 62.418333 kcal Electronic energy + Delta-G solvation = -24429.367276 eV Core-core repulsion = 20796.644015 eV Total energy + Delta-G solvation = -3632.723261 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.23559 -41.00094 -39.67361 -38.00008 -35.81731 -34.27279 -34.18570 -32.46714 -31.17646 -30.66951 -28.98071 -27.31540 -26.52019 -24.52655 -23.75677 -23.21127 -21.95431 -21.69762 -20.72482 -19.27933 -18.71424 -18.35937 -17.63851 -17.05911 -16.95930 -16.63365 -16.28592 -15.95167 -15.61127 -15.39925 -15.00873 -14.80575 -14.51676 -14.28141 -14.08304 -14.02442 -13.80176 -13.30796 -13.17976 -13.08380 -12.88044 -12.65832 -12.54481 -12.49020 -12.19565 -11.82674 -11.80335 -11.58750 -11.28918 -11.13237 -10.99826 -10.85720 -10.10285 -9.51009 -9.22493 -8.89257 -7.91419 -5.23258 -0.46877 0.31593 1.40776 1.45864 1.47783 1.56569 1.75676 2.03839 2.22966 2.48265 2.83794 3.09223 3.29383 3.41761 3.54408 3.67091 3.80976 4.00255 4.09389 4.15887 4.21700 4.23978 4.38463 4.53082 4.61438 4.67762 4.72815 4.80647 4.88600 4.90131 4.97168 5.08960 5.12201 5.19751 5.27619 5.29114 5.34242 5.42110 5.56384 5.66638 5.68829 5.95061 6.37355 6.53364 6.78196 6.93291 7.17279 7.61624 8.58222 9.26334 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.026610 B = 0.002237 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.971296 B =12514.244080 C =13282.598515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.300 3.700 3 N -0.537 5.537 4 C 0.054 3.946 5 C -0.082 4.082 6 C -0.087 4.087 7 C -0.134 4.134 8 C 0.561 3.439 9 O -0.582 6.582 10 N -0.708 5.708 11 C 0.141 3.859 12 C -0.115 4.115 13 C 0.168 3.832 14 N -0.646 5.646 15 C -0.235 4.235 16 H 0.084 0.916 17 C -0.068 4.068 18 N -0.952 5.952 19 Si 0.976 3.024 20 H -0.291 1.291 21 H -0.294 1.294 22 H -0.266 1.266 23 C 0.126 3.874 24 C -0.042 4.042 25 C 0.020 3.980 26 N -0.584 5.584 27 H 0.441 0.559 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.413 0.587 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.107 0.893 37 H 0.012 0.988 38 H 0.042 0.958 39 H 0.248 0.752 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.471 -4.989 9.186 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.034 3.966 3 N -0.259 5.259 4 C -0.066 4.066 5 C -0.101 4.101 6 C -0.108 4.108 7 C -0.139 4.139 8 C 0.350 3.650 9 O -0.463 6.463 10 N -0.359 5.359 11 C 0.017 3.983 12 C -0.135 4.135 13 C 0.043 3.957 14 N -0.373 5.373 15 C -0.363 4.363 16 H 0.102 0.898 17 C -0.261 4.261 18 N -0.601 5.601 19 Si 0.805 3.195 20 H -0.218 1.218 21 H -0.220 1.220 22 H -0.190 1.190 23 C 0.001 3.999 24 C -0.064 4.064 25 C -0.089 4.089 26 N -0.197 5.197 27 H 0.283 0.717 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.120 0.880 31 H 0.167 0.833 32 H 0.173 0.827 33 H 0.251 0.749 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.029 0.971 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -26.443 -4.782 9.027 28.348 hybrid contribution 1.296 -0.472 -0.888 1.641 sum -25.147 -5.254 8.138 26.948 Atomic orbital electron populations 1.20672 0.80467 1.06474 1.05919 1.24617 0.97497 0.80267 0.94232 1.70439 1.00980 1.29251 1.25243 1.19615 0.92829 0.91008 1.03136 1.20138 0.88531 1.00945 1.00493 1.20951 0.98956 0.92283 0.98639 1.19511 0.91868 0.94218 1.08286 1.18321 0.84518 0.86496 0.75695 1.90739 1.88207 1.14968 1.52427 1.45845 1.05148 1.11175 1.73708 1.21248 0.80593 0.94486 1.01973 1.23436 0.93158 0.98233 0.98670 1.22220 0.83170 0.97937 0.92410 1.46394 1.04789 1.45328 1.40740 1.19439 0.87756 1.21314 1.07823 0.89813 1.25654 1.00534 1.01794 0.98168 1.69999 1.26995 1.41146 1.21933 0.85090 0.79317 0.76855 0.78283 1.21785 1.22025 1.19006 1.22700 0.91682 0.92597 0.92954 1.20015 0.87982 1.00322 0.98087 1.18712 0.86288 0.95142 1.08804 1.43030 1.03562 1.11039 1.62094 0.71672 0.87527 0.87110 0.88040 0.83252 0.82736 0.74941 0.90230 0.92704 0.87451 0.97056 0.93973 0.94260 0.91842 0.93603 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.51 71.24 0.75 0.43 16 2 C 0.30 4.43 8.07 137.95 1.11 5.54 16 3 N -0.54 -12.14 11.27 -179.81 -2.03 -14.17 16 4 C 0.05 1.29 7.23 39.61 0.29 1.57 16 5 C -0.08 -1.77 10.03 22.22 0.22 -1.54 16 6 C -0.09 -1.83 9.46 22.26 0.21 -1.62 16 7 C -0.13 -3.31 5.88 -20.06 -0.12 -3.42 16 8 C 0.56 16.29 7.76 86.72 0.67 16.97 16 9 O -0.58 -20.69 16.33 -4.01 -0.07 -20.75 16 10 N -0.71 -18.82 5.50 -466.17 -2.57 -21.39 16 11 C 0.14 4.19 5.51 86.38 0.48 4.66 16 12 C -0.12 -3.90 3.93 -10.13 -0.04 -3.94 16 13 C 0.17 7.76 6.99 86.44 0.60 8.36 16 14 N -0.65 -32.92 3.70 -716.22 -2.65 -35.58 16 15 C -0.23 -13.23 10.70 84.03 0.90 -12.33 16 16 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 17 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 18 N -0.95 -57.65 11.51 21.65 0.25 -57.40 16 19 Si 0.98 45.96 29.56 68.60 2.03 47.99 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 23 C 0.13 4.85 8.51 86.49 0.74 5.59 16 24 C -0.04 -0.98 9.61 22.59 0.22 -0.76 16 25 C 0.02 0.43 7.29 38.79 0.28 0.72 16 26 N -0.58 -8.14 6.23 -179.34 -1.12 -9.26 16 27 H 0.44 2.80 8.96 -92.71 -0.83 1.96 16 28 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 32 H 0.16 2.53 6.36 -2.91 -0.02 2.51 16 33 H 0.41 9.20 6.47 -92.71 -0.60 8.60 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 35 H 0.05 1.83 7.88 -2.38 -0.02 1.81 16 36 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.01 0.57 7.92 -2.39 -0.02 0.55 16 38 H 0.04 2.15 7.37 -2.38 -0.02 2.13 16 39 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 40 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 42 H 0.14 3.07 7.64 -2.91 -0.02 3.05 16 Total: -1.00 -79.73 356.14 0.27 -79.46 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -0.36 Total: 14.33 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 6.78 Total: 16.76 kcal Atomic # 7 Polarization: -129.68 SS G_CDS: -8.11 Total: -137.79 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.07 Total: -20.75 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -79.73 0.27 -79.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032077621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.878 kcal (2) G-P(sol) polarization free energy of solvation -79.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds