Wall clock time and date at job start Tue Mar 31 2020 10:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30224 * 124.92805 * 2 1 4 4 C 1.35555 * 109.71019 * 179.97438 * 3 2 1 5 5 C 1.40012 * 133.40662 * 180.02562 * 4 3 2 6 6 C 1.36184 * 120.08193 * 179.76131 * 5 4 3 7 7 C 1.40175 * 120.51682 * 0.46229 * 6 5 4 8 8 C 1.47602 * 119.93567 * 179.78916 * 7 6 5 9 9 O 1.21593 * 119.99819 * 179.71989 * 8 7 6 10 10 N 1.34773 * 120.00232 * 359.97438 * 8 7 6 11 11 C 1.46505 * 120.00095 * 179.72721 * 10 8 7 12 12 C 1.53005 * 109.46904 * 180.02562 * 11 10 8 13 13 H 1.08997 * 112.96125 * 306.67315 * 12 11 10 14 14 C 1.53948 * 113.76586 * 175.00350 * 12 11 10 15 15 C 1.53948 * 86.28631 * 222.08766 * 14 12 11 16 16 N 1.47573 * 113.77294 * 78.50662 * 12 11 10 17 17 C 1.36940 * 134.49273 * 318.93905 * 16 12 11 18 18 H 1.08003 * 119.99782 * 359.97438 * 17 16 12 19 19 C 1.38814 * 120.00188 * 180.02562 * 17 16 12 20 20 N 1.31619 * 119.99708 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00031 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47190 * 59.99616 * 21 19 17 23 23 H 1.48492 * 109.47100 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46866 * 299.99676 * 21 19 17 25 25 C 1.39378 * 120.12435 * 359.50539 * 7 6 5 26 26 C 1.38409 * 119.57557 * 0.26082 * 25 7 6 27 27 N 1.35851 * 124.92691 * 180.02562 * 2 1 3 28 28 H 0.97004 * 126.37001 * 359.97438 * 27 2 1 29 29 H 1.09002 * 109.46668 * 89.97458 * 1 2 3 30 30 H 1.09000 * 109.47120 * 209.96867 * 1 2 3 31 31 H 1.08995 * 109.46881 * 329.97372 * 1 2 3 32 32 H 1.08004 * 119.96059 * 359.96165 * 5 4 3 33 33 H 1.08000 * 119.74301 * 180.22373 * 6 5 4 34 34 H 0.97000 * 120.00112 * 359.73156 * 10 8 7 35 35 H 1.09003 * 109.46699 * 299.99996 * 11 10 8 36 36 H 1.08993 * 109.47199 * 60.00009 * 11 10 8 37 37 H 1.09003 * 113.74064 * 336.43096 * 14 12 11 38 38 H 1.08995 * 113.74111 * 107.63799 * 14 12 11 39 39 H 1.09002 * 113.77091 * 137.90833 * 15 14 12 40 40 H 1.09002 * 113.76524 * 269.19486 * 15 14 12 41 41 H 0.96998 * 119.99858 * 180.02562 * 20 19 17 42 42 H 1.07995 * 120.20775 * 180.23910 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2526 1.0677 0.0000 4 6 3.5606 0.7118 0.0006 5 6 4.7560 1.4408 0.0013 6 6 5.9523 0.7901 0.0067 7 6 6.0006 -0.6108 0.0018 8 6 7.3044 -1.3028 0.0030 9 8 7.3476 -2.5180 0.0039 10 7 8.4468 -0.5879 0.0083 11 6 9.7408 -1.2749 0.0155 12 6 10.8676 -0.2398 0.0211 13 1 10.7796 0.4889 -0.7847 14 6 12.2733 -0.8537 0.1516 15 6 12.5751 0.2955 1.1305 16 7 11.1166 0.3614 1.3456 17 6 10.3159 0.8031 2.3649 18 1 9.2416 0.7399 2.2737 19 6 10.8849 1.3331 3.5148 20 7 12.1941 1.4115 3.6251 21 14 9.7926 1.9363 4.9048 22 1 8.9586 0.8128 5.4022 23 1 10.6385 2.4529 6.0105 24 1 8.9122 3.0234 4.4064 25 6 4.8199 -1.3515 0.0018 26 6 3.6015 -0.6948 0.0011 27 7 2.2848 -1.1138 -0.0005 28 1 1.9737 -2.0326 -0.0006 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3633 -0.8903 0.5133 31 1 -0.3633 0.8897 0.5142 32 1 4.7293 2.5205 0.0008 33 1 6.8710 1.3579 0.0108 34 1 8.4124 0.3815 0.0073 35 1 9.8162 -1.8983 0.9065 36 1 9.8254 -1.8998 -0.8735 37 1 12.2802 -1.8396 0.6166 38 1 12.8568 -0.8136 -0.7681 39 1 13.1357 -0.0145 2.0125 40 1 12.9910 1.1822 0.6521 41 1 12.5918 1.7815 4.4287 42 1 4.8556 -2.4308 0.0019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038866142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:18 Heat of formation + Delta-G solvation = 88.477858 kcal Electronic energy + Delta-G solvation = -25168.023222 eV Core-core repulsion = 21536.429987 eV Total energy + Delta-G solvation = -3631.593235 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.37023 -39.64180 -38.00627 -36.92062 -34.16187 -33.38114 -32.19526 -31.71955 -30.19195 -28.82850 -27.89337 -26.99872 -23.46453 -23.35552 -22.68849 -21.83115 -21.15785 -20.38381 -19.18871 -18.32102 -17.49560 -16.75358 -16.38478 -15.80782 -15.73328 -15.26460 -14.71757 -14.54160 -14.20569 -14.04800 -13.81449 -13.54183 -13.42807 -13.28756 -13.20258 -12.93479 -12.63088 -11.96310 -11.69148 -11.58564 -11.40354 -11.09331 -11.00093 -10.88214 -10.71774 -10.55288 -10.22312 -10.04351 -9.76474 -9.70890 -9.36639 -8.78396 -8.68082 -8.56306 -8.23464 -6.88866 -5.75424 -3.08036 0.52551 1.29176 2.33507 2.54593 3.17069 3.40477 3.45561 3.45713 3.51868 3.81612 3.91883 4.34400 4.44583 4.78116 4.82601 4.90242 5.00540 5.13081 5.14053 5.18564 5.25212 5.37695 5.41302 5.47914 5.62201 5.73049 5.91903 5.92446 6.07758 6.16905 6.27164 6.28697 6.33631 6.41092 6.61122 6.63040 6.71287 6.87683 7.03502 7.25604 7.41654 7.60196 7.61431 7.86664 7.99606 8.50890 9.05375 9.72309 10.60137 11.41249 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.015635 B = 0.003360 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.454017 B = 8330.557461 C = 9571.082321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.286 3.714 3 N -0.495 5.495 4 C 0.070 3.930 5 C -0.072 4.072 6 C -0.092 4.092 7 C -0.112 4.112 8 C 0.557 3.443 9 O -0.550 6.550 10 N -0.706 5.706 11 C 0.123 3.877 12 C 0.125 3.875 13 H 0.050 0.950 14 C -0.156 4.156 15 C 0.159 3.841 16 N -0.602 5.602 17 C -0.220 4.220 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.906 3.094 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C -0.046 4.046 26 C 0.033 3.967 27 N -0.596 5.596 28 H 0.423 0.577 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.403 0.597 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.027 0.973 41 H 0.254 0.746 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.471 -4.163 -10.392 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.019 3.981 3 N -0.217 5.217 4 C -0.050 4.050 5 C -0.091 4.091 6 C -0.113 4.113 7 C -0.117 4.117 8 C 0.344 3.656 9 O -0.430 6.430 10 N -0.356 5.356 11 C -0.001 4.001 12 C 0.018 3.982 13 H 0.068 0.932 14 C -0.195 4.195 15 C 0.034 3.966 16 N -0.329 5.329 17 C -0.348 4.348 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.736 3.264 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 C -0.067 4.067 26 C -0.076 4.076 27 N -0.208 5.208 28 H 0.262 0.738 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.239 0.761 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.044 0.956 41 H 0.064 0.936 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.697 -3.987 -10.053 21.599 hybrid contribution -0.448 -0.294 0.872 1.024 sum -19.145 -4.281 -9.180 21.660 Atomic orbital electron populations 1.20395 0.84064 1.04835 1.04313 1.23668 0.95765 0.81053 0.97620 1.70395 1.00956 1.27509 1.22791 1.19210 0.92044 0.90245 1.03456 1.19923 0.88652 1.00152 1.00400 1.20853 0.98247 0.93035 0.99141 1.19684 0.92950 0.93536 1.05537 1.18023 0.83837 0.86905 0.76830 1.90741 1.87722 1.13453 1.51106 1.45881 1.05735 1.10683 1.73259 1.21809 0.81087 0.95683 1.01567 1.22513 0.92687 0.92832 0.90210 0.93245 1.23775 0.95699 1.00408 0.99582 1.22196 0.86906 0.92203 0.95338 1.46071 1.02485 1.72548 1.11776 1.18901 0.89041 1.33984 0.92864 0.90376 1.24747 0.95805 1.01530 0.98168 1.69806 1.08350 1.50529 1.28026 0.86295 0.79360 0.78716 0.82010 1.21134 1.21575 1.21112 1.19958 0.87725 1.00199 0.98844 1.18694 0.85283 0.95335 1.08308 1.42989 1.04778 1.09930 1.63081 0.73762 0.89248 0.90103 0.88394 0.84581 0.84500 0.76122 0.90783 0.91985 0.90499 0.92784 0.90834 0.95557 0.93643 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.51 36.01 0.38 0.01 16 2 C 0.29 2.77 8.07 -154.90 -1.25 1.52 16 3 N -0.50 -6.58 11.26 -8.19 -0.09 -6.67 16 4 C 0.07 0.98 7.23 -84.62 -0.61 0.37 16 5 C -0.07 -0.95 10.03 -39.66 -0.40 -1.35 16 6 C -0.09 -1.24 9.46 -39.59 -0.37 -1.62 16 7 C -0.11 -1.69 5.88 -104.93 -0.62 -2.30 16 8 C 0.56 9.72 7.76 -12.44 -0.10 9.62 16 9 O -0.55 -11.08 16.33 5.28 0.09 -10.99 16 10 N -0.71 -12.03 5.48 -61.32 -0.34 -12.37 16 11 C 0.12 2.22 5.54 -4.04 -0.02 2.19 16 12 C 0.13 2.38 4.33 -66.86 -0.29 2.09 16 13 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 14 C -0.16 -2.82 7.86 -25.80 -0.20 -3.02 16 15 C 0.16 3.62 7.51 -2.98 -0.02 3.60 16 16 N -0.60 -14.58 3.57 -170.75 -0.61 -15.19 16 17 C -0.22 -5.90 10.51 -15.06 -0.16 -6.06 16 18 H 0.08 2.01 7.80 -52.48 -0.41 1.60 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 20 N -0.92 -26.99 11.38 55.49 0.63 -26.36 16 21 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C -0.05 -0.63 9.61 -39.09 -0.38 -1.00 16 26 C 0.03 0.42 7.29 -84.00 -0.61 -0.19 16 27 N -0.60 -5.54 6.23 -8.04 -0.05 -5.59 16 28 H 0.42 2.38 8.96 -40.82 -0.37 2.01 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 33 H 0.14 1.67 6.36 -52.49 -0.33 1.34 16 34 H 0.40 6.42 6.47 -40.82 -0.26 6.16 16 35 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.38 8.10 -51.93 -0.42 0.95 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.87 7.16 -51.93 -0.37 1.50 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.14 1.78 7.63 -52.49 -0.40 1.38 16 LS Contribution 356.22 15.07 5.37 5.37 Total: -1.00 -35.06 356.22 -10.28 -45.34 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -5.51 Total: 5.70 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -4.75 Total: 3.60 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: -0.46 Total: -66.17 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.06 -10.28 -45.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038866142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.819 kcal (2) G-P(sol) polarization free energy of solvation -35.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds