Wall clock time and date at job start Tue Mar 31 2020 10:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30224 * 124.92805 * 2 1 4 4 C 1.35555 * 109.71019 * 179.97438 * 3 2 1 5 5 C 1.40012 * 133.40662 * 180.02562 * 4 3 2 6 6 C 1.36184 * 120.08193 * 179.76131 * 5 4 3 7 7 C 1.40175 * 120.51682 * 0.46229 * 6 5 4 8 8 C 1.47602 * 119.93567 * 179.78916 * 7 6 5 9 9 O 1.21593 * 119.99819 * 179.71989 * 8 7 6 10 10 N 1.34773 * 120.00232 * 359.97438 * 8 7 6 11 11 C 1.46505 * 120.00095 * 179.72721 * 10 8 7 12 12 C 1.53005 * 109.46904 * 180.02562 * 11 10 8 13 13 H 1.08997 * 112.96125 * 306.67315 * 12 11 10 14 14 C 1.53948 * 113.76586 * 175.00350 * 12 11 10 15 15 C 1.53948 * 86.28631 * 222.08766 * 14 12 11 16 16 N 1.47573 * 113.77294 * 78.50662 * 12 11 10 17 17 C 1.36940 * 134.49273 * 318.93905 * 16 12 11 18 18 H 1.08003 * 119.99782 * 359.97438 * 17 16 12 19 19 C 1.38814 * 120.00188 * 180.02562 * 17 16 12 20 20 N 1.31619 * 119.99708 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00031 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47190 * 59.99616 * 21 19 17 23 23 H 1.48492 * 109.47100 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46866 * 299.99676 * 21 19 17 25 25 C 1.39378 * 120.12435 * 359.50539 * 7 6 5 26 26 C 1.38409 * 119.57557 * 0.26082 * 25 7 6 27 27 N 1.35851 * 124.92691 * 180.02562 * 2 1 3 28 28 H 0.97004 * 126.37001 * 359.97438 * 27 2 1 29 29 H 1.09002 * 109.46668 * 89.97458 * 1 2 3 30 30 H 1.09000 * 109.47120 * 209.96867 * 1 2 3 31 31 H 1.08995 * 109.46881 * 329.97372 * 1 2 3 32 32 H 1.08004 * 119.96059 * 359.96165 * 5 4 3 33 33 H 1.08000 * 119.74301 * 180.22373 * 6 5 4 34 34 H 0.97000 * 120.00112 * 359.73156 * 10 8 7 35 35 H 1.09003 * 109.46699 * 299.99996 * 11 10 8 36 36 H 1.08993 * 109.47199 * 60.00009 * 11 10 8 37 37 H 1.09003 * 113.74064 * 336.43096 * 14 12 11 38 38 H 1.08995 * 113.74111 * 107.63799 * 14 12 11 39 39 H 1.09002 * 113.77091 * 137.90833 * 15 14 12 40 40 H 1.09002 * 113.76524 * 269.19486 * 15 14 12 41 41 H 0.96998 * 119.99858 * 180.02562 * 20 19 17 42 42 H 1.07995 * 120.20775 * 180.23910 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2526 1.0677 0.0000 4 6 3.5606 0.7118 0.0006 5 6 4.7560 1.4408 0.0013 6 6 5.9523 0.7901 0.0067 7 6 6.0006 -0.6108 0.0018 8 6 7.3044 -1.3028 0.0030 9 8 7.3476 -2.5180 0.0039 10 7 8.4468 -0.5879 0.0083 11 6 9.7408 -1.2749 0.0155 12 6 10.8676 -0.2398 0.0211 13 1 10.7796 0.4889 -0.7847 14 6 12.2733 -0.8537 0.1516 15 6 12.5751 0.2955 1.1305 16 7 11.1166 0.3614 1.3456 17 6 10.3159 0.8031 2.3649 18 1 9.2416 0.7399 2.2737 19 6 10.8849 1.3331 3.5148 20 7 12.1941 1.4115 3.6251 21 14 9.7926 1.9363 4.9048 22 1 8.9586 0.8128 5.4022 23 1 10.6385 2.4529 6.0105 24 1 8.9122 3.0234 4.4064 25 6 4.8199 -1.3515 0.0018 26 6 3.6015 -0.6948 0.0011 27 7 2.2848 -1.1138 -0.0005 28 1 1.9737 -2.0326 -0.0006 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3633 -0.8903 0.5133 31 1 -0.3633 0.8897 0.5142 32 1 4.7293 2.5205 0.0008 33 1 6.8710 1.3579 0.0108 34 1 8.4124 0.3815 0.0073 35 1 9.8162 -1.8983 0.9065 36 1 9.8254 -1.8998 -0.8735 37 1 12.2802 -1.8396 0.6166 38 1 12.8568 -0.8136 -0.7681 39 1 13.1357 -0.0145 2.0125 40 1 12.9910 1.1822 0.6521 41 1 12.5918 1.7815 4.4287 42 1 4.8556 -2.4308 0.0019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038866142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:18 Heat of formation + Delta-G solvation = 64.516249 kcal Electronic energy + Delta-G solvation = -25169.062275 eV Core-core repulsion = 21536.429987 eV Total energy + Delta-G solvation = -3632.632288 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.26217 -40.98812 -39.62245 -38.02118 -35.61593 -34.29650 -34.19035 -32.47429 -31.19957 -30.05964 -29.70654 -28.18522 -25.26710 -24.67198 -23.77784 -23.15969 -21.96899 -21.66541 -20.84465 -19.54023 -18.57663 -18.28056 -17.63000 -17.09149 -17.01892 -16.63715 -16.18382 -15.90233 -15.60790 -15.44246 -15.04107 -14.84620 -14.63616 -14.31163 -14.06029 -13.91742 -13.57346 -13.26836 -13.19804 -12.91010 -12.74142 -12.63433 -12.60124 -12.50867 -12.30580 -11.84351 -11.82626 -11.52128 -11.40426 -11.14504 -10.94658 -10.79910 -10.08566 -9.54269 -9.25179 -8.86031 -7.84975 -5.16107 -0.49491 0.27500 1.38946 1.44926 1.46575 1.51934 1.73414 2.01608 2.24106 2.49227 2.80704 3.06101 3.34387 3.40721 3.51697 3.69819 3.97220 4.00956 4.09324 4.16804 4.18572 4.21047 4.38185 4.49304 4.63177 4.67068 4.71557 4.74845 4.89352 4.93722 5.06806 5.08953 5.11999 5.16970 5.25832 5.30769 5.36586 5.43569 5.63982 5.65125 5.77815 6.00925 6.35712 6.52134 6.75668 6.98134 7.15893 7.68000 8.62533 9.31840 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.015635 B = 0.003360 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.454017 B = 8330.557461 C = 9571.082321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.302 3.698 3 N -0.536 5.536 4 C 0.055 3.945 5 C -0.081 4.081 6 C -0.090 4.090 7 C -0.135 4.135 8 C 0.558 3.442 9 O -0.583 6.583 10 N -0.704 5.704 11 C 0.131 3.869 12 C 0.132 3.868 13 H 0.074 0.926 14 C -0.130 4.130 15 C 0.149 3.851 16 N -0.630 5.630 17 C -0.212 4.212 18 H 0.085 0.915 19 C -0.069 4.069 20 N -0.954 5.954 21 Si 0.962 3.038 22 H -0.286 1.286 23 H -0.297 1.297 24 H -0.274 1.274 25 C -0.041 4.041 26 C 0.022 3.978 27 N -0.583 5.583 28 H 0.441 0.559 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.408 0.592 35 H 0.044 0.956 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.038 0.962 40 H 0.023 0.977 41 H 0.245 0.755 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.082 -4.544 -11.806 24.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.035 3.965 3 N -0.258 5.258 4 C -0.065 4.065 5 C -0.100 4.100 6 C -0.111 4.111 7 C -0.139 4.139 8 C 0.347 3.653 9 O -0.465 6.465 10 N -0.354 5.354 11 C 0.007 3.993 12 C 0.026 3.974 13 H 0.091 0.909 14 C -0.169 4.169 15 C 0.024 3.976 16 N -0.356 5.356 17 C -0.341 4.341 18 H 0.102 0.898 19 C -0.262 4.262 20 N -0.604 5.604 21 Si 0.791 3.209 22 H -0.213 1.213 23 H -0.223 1.223 24 H -0.200 1.200 25 C -0.063 4.063 26 C -0.088 4.088 27 N -0.196 5.196 28 H 0.284 0.716 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.119 0.881 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.245 0.755 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.056 0.944 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -21.346 -4.393 -11.505 24.644 hybrid contribution 0.202 -0.216 1.229 1.264 sum -21.145 -4.609 -10.277 23.957 Atomic orbital electron populations 1.20678 0.80308 1.06439 1.06039 1.24646 0.97526 0.80198 0.94118 1.70431 1.00803 1.29286 1.25280 1.19560 0.92790 0.90986 1.03119 1.20097 0.88517 1.00888 1.00530 1.20896 0.98815 0.92455 0.98896 1.19536 0.92066 0.94147 1.08198 1.18347 0.84581 0.86553 0.75820 1.90712 1.88231 1.14811 1.52780 1.45845 1.05463 1.10954 1.73138 1.21618 0.81324 0.95200 1.01179 1.22692 0.93611 0.92909 0.88185 0.90896 1.23567 0.95132 0.98409 0.99783 1.22173 0.86050 0.94025 0.95345 1.46425 1.03197 1.72561 1.13459 1.19260 0.89747 1.31653 0.93402 0.89770 1.25461 0.96871 1.03213 1.00608 1.69984 1.09736 1.52492 1.28193 0.85390 0.77787 0.78272 0.79402 1.21271 1.22344 1.19987 1.19989 0.87894 1.00294 0.98090 1.18681 0.86317 0.95099 1.08708 1.43009 1.03410 1.11075 1.62140 0.71618 0.87246 0.87152 0.88105 0.83324 0.83618 0.75472 0.93772 0.89757 0.90378 0.88664 0.94364 0.95895 0.94601 0.84263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.51 71.24 0.75 0.31 16 2 C 0.30 5.07 8.07 137.95 1.11 6.18 16 3 N -0.54 -13.42 11.26 -179.81 -2.03 -15.44 16 4 C 0.06 1.50 7.23 39.61 0.29 1.78 16 5 C -0.08 -2.10 10.03 22.22 0.22 -1.87 16 6 C -0.09 -2.37 9.46 22.26 0.21 -2.16 16 7 C -0.13 -4.00 5.88 -20.06 -0.12 -4.11 16 8 C 0.56 19.30 7.76 86.72 0.67 19.98 16 9 O -0.58 -23.45 16.33 -4.01 -0.07 -23.51 16 10 N -0.70 -23.41 5.48 -466.18 -2.55 -25.96 16 11 C 0.13 4.57 5.54 86.38 0.48 5.05 16 12 C 0.13 4.77 4.33 45.10 0.20 4.97 16 13 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 14 C -0.13 -4.45 7.86 31.26 0.25 -4.20 16 15 C 0.15 6.83 7.51 86.48 0.65 7.48 16 16 N -0.63 -30.36 3.57 -694.12 -2.48 -32.84 16 17 C -0.21 -11.39 10.51 84.03 0.88 -10.51 16 18 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 19 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 20 N -0.95 -57.62 11.38 21.65 0.25 -57.37 16 21 Si 0.96 46.34 29.55 68.60 2.03 48.36 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 C -0.04 -1.10 9.61 22.59 0.22 -0.89 16 26 C 0.02 0.53 7.29 38.79 0.28 0.82 16 27 N -0.58 -9.47 6.23 -179.34 -1.12 -10.59 16 28 H 0.44 3.71 8.96 -92.71 -0.83 2.88 16 29 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 33 H 0.15 3.45 6.36 -2.91 -0.02 3.43 16 34 H 0.41 12.59 6.47 -92.71 -0.60 11.99 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.80 16 36 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.08 2.67 8.10 -2.39 -0.02 2.65 16 38 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.04 2.00 7.16 -2.39 -0.02 1.99 16 40 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 42 H 0.14 3.57 7.63 -2.91 -0.02 3.55 16 Total: -1.00 -77.79 356.22 0.23 -77.57 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -0.36 Total: 20.41 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 6.56 Total: 19.38 kcal Atomic # 7 Polarization: -134.27 SS G_CDS: -7.93 Total: -142.20 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.07 Total: -23.51 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -77.79 0.23 -77.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038866142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.081 kcal (2) G-P(sol) polarization free energy of solvation -77.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds