Wall clock time and date at job start Tue Mar 31 2020 11:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 120.00110 * 2 1 4 4 C 1.50701 * 120.00481 * 179.97438 * 2 1 3 5 5 N 1.46906 * 109.46898 * 94.99765 * 4 2 1 6 6 C 1.46848 * 111.00135 * 293.95942 * 5 4 2 7 7 C 1.53035 * 109.52142 * 185.83611 * 6 5 4 8 8 C 1.53114 * 109.28189 * 300.82150 * 7 6 5 9 9 H 1.09001 * 109.52084 * 297.74913 * 8 7 6 10 10 N 1.46505 * 109.52519 * 177.55927 * 8 7 6 11 11 C 1.34768 * 119.99727 * 85.31878 * 10 8 7 12 12 O 1.21280 * 120.00665 * 359.97438 * 11 10 8 13 13 C 1.50709 * 119.99629 * 180.02562 * 11 10 8 14 14 S 1.81001 * 109.47031 * 179.97438 * 13 11 10 15 15 C 1.76201 * 100.00081 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99683 * 359.97438 * 15 14 13 17 17 C 1.38798 * 119.99951 * 180.02562 * 15 14 13 18 18 N 1.31630 * 119.99999 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99756 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47405 * 89.99523 * 19 17 15 21 21 H 1.48502 * 109.47157 * 209.99458 * 19 17 15 22 22 H 1.48505 * 109.47479 * 329.99597 * 19 17 15 23 23 C 1.53126 * 109.16071 * 57.65474 * 8 7 6 24 24 H 1.09006 * 109.50177 * 182.40700 * 23 8 7 25 25 O 1.42891 * 109.50363 * 62.28843 * 23 8 7 26 26 C 1.46847 * 110.99812 * 58.16867 * 5 4 2 27 27 H 1.07992 * 120.00396 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.00194 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47406 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46819 * 300.00224 * 3 2 1 31 31 H 1.09002 * 109.47026 * 59.99461 * 3 2 1 32 32 H 1.09000 * 109.47272 * 335.00380 * 4 2 1 33 33 H 1.08997 * 109.47692 * 214.99838 * 4 2 1 34 34 H 1.09000 * 109.46321 * 65.82514 * 6 5 4 35 35 H 1.09002 * 109.46191 * 305.85104 * 6 5 4 36 36 H 1.08994 * 109.50219 * 180.87675 * 7 6 5 37 37 H 1.09009 * 109.50165 * 60.76002 * 7 6 5 38 38 H 0.97004 * 119.99727 * 265.31278 * 10 8 7 39 39 H 1.09001 * 109.46521 * 299.99181 * 13 11 10 40 40 H 1.08999 * 109.47429 * 59.99512 * 13 11 10 41 41 H 0.96999 * 119.99394 * 180.02562 * 18 17 15 42 42 H 0.96704 * 114.00121 * 180.02562 * 25 23 8 43 43 H 1.08999 * 109.46634 * 54.14179 * 26 5 4 44 44 H 1.09006 * 109.46422 * 294.18075 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 0.0006 5 7 2.4129 -1.6693 -1.3791 6 6 1.2088 -1.9615 -2.1672 7 6 1.6151 -2.4758 -3.5501 8 6 2.4640 -1.4143 -4.2550 9 1 1.8718 -0.5105 -4.3985 10 7 2.9046 -1.9242 -5.5558 11 6 2.1039 -1.8037 -6.6331 12 8 1.0183 -1.2737 -6.5257 13 6 2.5569 -2.3288 -7.9711 14 16 1.2710 -2.0204 -9.2071 15 6 2.0430 -2.7133 -10.6313 16 1 3.0267 -3.1520 -10.5527 17 6 1.3872 -2.6944 -11.8545 18 7 0.1885 -2.1593 -11.9504 19 14 2.2060 -3.4284 -13.3645 20 1 1.8455 -4.8648 -13.4742 21 1 1.7434 -2.7079 -14.5779 22 1 3.6801 -3.2960 -13.2421 23 6 3.6865 -1.0930 -3.3906 24 1 4.2726 -0.3070 -3.8669 25 8 4.4894 -2.2661 -3.2450 26 6 3.2201 -0.6188 -2.0124 27 1 -0.5400 0.9352 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 3.1351 1.1060 -0.0005 30 1 1.8001 1.8767 -0.8900 31 1 1.8001 1.8767 0.8900 32 1 1.4387 -2.0853 0.4352 33 1 2.9742 -1.1986 0.5899 34 1 0.6173 -1.0525 -2.2772 35 1 0.6161 -2.7208 -1.6570 36 1 0.7213 -2.6777 -4.1403 37 1 2.1950 -3.3924 -3.4415 38 1 3.7728 -2.3484 -5.6417 39 1 3.4754 -1.8226 -8.2679 40 1 2.7401 -3.4008 -7.8977 41 1 -0.2699 -2.1464 -12.8052 42 1 5.2826 -2.1356 -2.7074 43 1 4.0883 -0.4028 -1.3897 44 1 2.6192 0.2840 -2.1230 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099687494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:03 Heat of formation + Delta-G solvation = -67.095625 kcal Electronic energy + Delta-G solvation = -24203.789205 eV Core-core repulsion = 20668.600998 eV Total energy + Delta-G solvation = -3535.188207 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.35864 -38.81033 -37.10075 -34.95902 -33.96333 -32.40394 -31.35878 -30.32314 -28.93305 -27.65668 -26.22608 -25.42494 -23.37719 -22.77341 -20.23407 -20.11029 -18.99619 -17.80320 -17.09647 -16.65436 -16.23786 -15.85880 -15.59766 -15.08377 -14.89808 -14.78137 -14.52930 -14.14754 -13.93809 -13.75143 -13.53696 -13.26708 -13.02320 -12.85657 -12.53200 -12.19551 -12.09796 -11.90541 -11.80345 -11.65096 -11.45722 -11.13075 -11.03989 -10.99658 -10.76114 -10.63272 -10.15981 -9.78411 -9.47844 -9.32755 -9.04447 -8.78991 -8.54910 -8.20315 -6.46825 -6.19292 -3.89337 1.80139 3.06504 3.14369 3.24264 3.29759 3.34217 3.59758 3.76331 4.11823 4.23109 4.40468 4.45452 4.52415 4.67492 4.77733 4.97712 5.06366 5.14968 5.15892 5.18770 5.20640 5.23289 5.32675 5.37649 5.46037 5.51168 5.55480 5.57534 5.58131 5.75699 5.78807 5.94901 5.97974 6.19684 6.20973 6.33143 6.41692 6.70926 6.75123 6.80476 7.47258 7.62295 7.83547 8.37972 8.68307 9.26119 10.88185 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.031321 B = 0.002487 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.741875 B =11255.295455 C =11689.723165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.169 4.169 3 C -0.119 4.119 4 C 0.088 3.912 5 N -0.516 5.516 6 C 0.056 3.944 7 C -0.124 4.124 8 C 0.158 3.842 9 H 0.092 0.908 10 N -0.728 5.728 11 C 0.532 3.468 12 O -0.521 6.521 13 C -0.152 4.152 14 S -0.061 6.061 15 C -0.534 4.534 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.102 3.898 24 H 0.064 0.936 25 O -0.548 6.548 26 C 0.024 3.976 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.404 0.596 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.376 0.624 43 H 0.079 0.921 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.071 3.628 26.175 27.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.171 4.171 3 C -0.176 4.176 4 C -0.040 4.040 5 N -0.238 5.238 6 C -0.072 4.072 7 C -0.163 4.163 8 C 0.052 3.948 9 H 0.110 0.890 10 N -0.382 5.382 11 C 0.318 3.682 12 O -0.396 6.396 13 C -0.303 4.303 14 S 0.166 5.834 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.504 5.504 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C 0.042 3.958 24 H 0.082 0.918 25 O -0.353 6.353 26 C -0.105 4.105 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.238 0.762 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.223 0.777 43 H 0.098 0.902 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.940 3.862 25.848 26.801 hybrid contribution 2.030 -0.208 -0.764 2.179 sum 7.970 3.655 25.084 26.572 Atomic orbital electron populations 1.23761 0.95348 1.02052 1.00573 1.22538 0.96172 0.97274 1.01088 1.20940 0.99902 0.94703 1.02008 1.21368 0.99348 0.92684 0.90596 1.62278 1.19673 1.40448 1.01417 1.22117 0.91046 1.00077 0.93953 1.21926 1.00515 0.99682 0.94220 1.20904 0.93605 0.98015 0.82276 0.88981 1.45957 1.21749 1.62875 1.07588 1.20338 0.84448 0.78286 0.85123 1.90688 1.21193 1.42426 1.85270 1.23527 1.06338 1.03898 0.96553 1.85365 1.20336 1.78464 0.99278 1.22875 1.05836 1.44766 0.94783 0.90934 1.24993 0.94913 0.95151 0.98578 1.70023 1.12382 1.42081 1.25883 0.86167 0.79385 0.79041 0.80896 1.20270 1.20780 1.19701 1.22110 0.92004 0.87928 0.93749 0.91813 1.86523 1.39222 1.34672 1.74845 1.22868 0.98337 0.93652 0.95673 0.88526 0.88336 0.92018 0.91666 0.91677 0.90092 0.90193 0.94163 0.90571 0.90696 0.90067 0.76162 0.89303 0.89200 0.92223 0.77739 0.90246 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 12.68 29.02 0.37 -0.98 16 2 C -0.17 -1.23 4.18 -101.06 -0.42 -1.65 16 3 C -0.12 -0.74 8.47 36.01 0.30 -0.43 16 4 C 0.09 0.63 5.50 -4.97 -0.03 0.61 16 5 N -0.52 -4.50 4.74 -236.11 -1.12 -5.62 16 6 C 0.06 0.58 4.90 -3.83 -0.02 0.56 16 7 C -0.12 -1.56 5.52 -26.65 -0.15 -1.71 16 8 C 0.16 1.99 2.31 -67.80 -0.16 1.84 16 9 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 10 N -0.73 -10.51 5.05 -53.68 -0.27 -10.78 16 11 C 0.53 10.22 7.82 -10.98 -0.09 10.13 16 12 O -0.52 -11.93 15.53 5.56 0.09 -11.85 16 13 C -0.15 -3.17 6.16 36.01 0.22 -2.95 16 14 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 15 C -0.53 -15.42 9.50 30.94 0.29 -15.13 16 16 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.44 13.22 55.49 0.73 -25.70 16 19 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 C 0.10 0.94 3.43 -26.65 -0.09 0.85 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 O -0.55 -4.90 12.06 -35.23 -0.42 -5.32 16 26 C 0.02 0.19 3.87 -3.84 -0.01 0.17 16 27 H 0.10 0.69 8.05 -52.49 -0.42 0.27 16 28 H 0.10 0.72 7.99 -52.48 -0.42 0.30 16 29 H 0.06 0.34 7.16 -51.93 -0.37 -0.04 16 30 H 0.06 0.44 7.86 -51.93 -0.41 0.03 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.58 7.91 -51.93 -0.41 0.17 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.04 0.44 6.78 -51.93 -0.35 0.09 16 35 H 0.08 0.74 8.06 -51.93 -0.42 0.32 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.08 1.08 7.80 -51.92 -0.40 0.68 16 38 H 0.40 5.07 8.12 -40.82 -0.33 4.74 16 39 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 40 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.38 1.91 9.08 45.56 0.41 2.32 16 43 H 0.08 0.48 7.82 -51.93 -0.41 0.08 16 44 H 0.05 0.43 6.05 -51.93 -0.31 0.11 16 LS Contribution 367.06 15.07 5.53 5.53 Total: -1.00 -34.54 367.06 -8.89 -43.43 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.32 Total: 4.28 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 0.13 Total: -6.69 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: -0.66 Total: -42.10 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.34 Total: -17.17 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.54 -8.89 -43.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099687494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.669 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds