Wall clock time and date at job start Tue Mar 31 2020 11:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 120.00110 * 2 1 4 4 C 1.50701 * 120.00481 * 179.97438 * 2 1 3 5 5 N 1.46906 * 109.46898 * 94.99765 * 4 2 1 6 6 C 1.46848 * 111.00135 * 293.95942 * 5 4 2 7 7 C 1.53035 * 109.52142 * 185.83611 * 6 5 4 8 8 C 1.53114 * 109.28189 * 300.82150 * 7 6 5 9 9 H 1.09001 * 109.52084 * 297.74913 * 8 7 6 10 10 N 1.46505 * 109.52519 * 177.55927 * 8 7 6 11 11 C 1.34768 * 119.99727 * 85.31878 * 10 8 7 12 12 O 1.21280 * 120.00665 * 359.97438 * 11 10 8 13 13 C 1.50709 * 119.99629 * 180.02562 * 11 10 8 14 14 S 1.81001 * 109.47031 * 179.97438 * 13 11 10 15 15 C 1.76201 * 100.00081 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99683 * 359.97438 * 15 14 13 17 17 C 1.38798 * 119.99951 * 180.02562 * 15 14 13 18 18 N 1.31630 * 119.99999 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99756 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47405 * 89.99523 * 19 17 15 21 21 H 1.48502 * 109.47157 * 209.99458 * 19 17 15 22 22 H 1.48505 * 109.47479 * 329.99597 * 19 17 15 23 23 C 1.53126 * 109.16071 * 57.65474 * 8 7 6 24 24 H 1.09006 * 109.50177 * 182.40700 * 23 8 7 25 25 O 1.42891 * 109.50363 * 62.28843 * 23 8 7 26 26 C 1.46847 * 110.99812 * 58.16867 * 5 4 2 27 27 H 1.07992 * 120.00396 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.00194 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47406 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46819 * 300.00224 * 3 2 1 31 31 H 1.09002 * 109.47026 * 59.99461 * 3 2 1 32 32 H 1.09000 * 109.47272 * 335.00380 * 4 2 1 33 33 H 1.08997 * 109.47692 * 214.99838 * 4 2 1 34 34 H 1.09000 * 109.46321 * 65.82514 * 6 5 4 35 35 H 1.09002 * 109.46191 * 305.85104 * 6 5 4 36 36 H 1.08994 * 109.50219 * 180.87675 * 7 6 5 37 37 H 1.09009 * 109.50165 * 60.76002 * 7 6 5 38 38 H 0.97004 * 119.99727 * 265.31278 * 10 8 7 39 39 H 1.09001 * 109.46521 * 299.99181 * 13 11 10 40 40 H 1.08999 * 109.47429 * 59.99512 * 13 11 10 41 41 H 0.96999 * 119.99394 * 180.02562 * 18 17 15 42 42 H 0.96704 * 114.00121 * 180.02562 * 25 23 8 43 43 H 1.08999 * 109.46634 * 54.14179 * 26 5 4 44 44 H 1.09006 * 109.46422 * 294.18075 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 0.0006 5 7 2.4129 -1.6693 -1.3791 6 6 1.2088 -1.9615 -2.1672 7 6 1.6151 -2.4758 -3.5501 8 6 2.4640 -1.4143 -4.2550 9 1 1.8718 -0.5105 -4.3985 10 7 2.9046 -1.9242 -5.5558 11 6 2.1039 -1.8037 -6.6331 12 8 1.0183 -1.2737 -6.5257 13 6 2.5569 -2.3288 -7.9711 14 16 1.2710 -2.0204 -9.2071 15 6 2.0430 -2.7133 -10.6313 16 1 3.0267 -3.1520 -10.5527 17 6 1.3872 -2.6944 -11.8545 18 7 0.1885 -2.1593 -11.9504 19 14 2.2060 -3.4284 -13.3645 20 1 1.8455 -4.8648 -13.4742 21 1 1.7434 -2.7079 -14.5779 22 1 3.6801 -3.2960 -13.2421 23 6 3.6865 -1.0930 -3.3906 24 1 4.2726 -0.3070 -3.8669 25 8 4.4894 -2.2661 -3.2450 26 6 3.2201 -0.6188 -2.0124 27 1 -0.5400 0.9352 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 3.1351 1.1060 -0.0005 30 1 1.8001 1.8767 -0.8900 31 1 1.8001 1.8767 0.8900 32 1 1.4387 -2.0853 0.4352 33 1 2.9742 -1.1986 0.5899 34 1 0.6173 -1.0525 -2.2772 35 1 0.6161 -2.7208 -1.6570 36 1 0.7213 -2.6777 -4.1403 37 1 2.1950 -3.3924 -3.4415 38 1 3.7728 -2.3484 -5.6417 39 1 3.4754 -1.8226 -8.2679 40 1 2.7401 -3.4008 -7.8977 41 1 -0.2699 -2.1464 -12.8052 42 1 5.2826 -2.1356 -2.7074 43 1 4.0883 -0.4028 -1.3897 44 1 2.6192 0.2840 -2.1230 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099687494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:03 Heat of formation + Delta-G solvation = -94.607377 kcal Electronic energy + Delta-G solvation = -24204.982204 eV Core-core repulsion = 20668.600998 eV Total energy + Delta-G solvation = -3536.381206 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.33710 -40.05724 -37.86603 -35.86022 -34.95364 -34.58753 -32.47962 -31.14111 -30.28042 -28.22783 -27.70310 -26.96144 -24.22420 -23.62431 -21.62013 -21.07778 -19.83697 -19.54294 -17.92979 -17.74276 -17.62756 -16.88428 -16.77156 -16.50053 -16.12800 -15.95482 -15.67648 -15.38592 -14.86192 -14.74986 -14.58161 -14.36075 -14.11656 -13.91416 -13.79593 -13.54134 -13.17003 -12.89718 -12.78322 -12.66720 -12.58086 -12.50722 -12.39242 -12.22280 -12.00912 -11.75144 -11.55643 -11.14621 -10.96949 -10.79463 -10.28696 -10.08224 -10.05375 -9.24331 -8.67288 -8.35082 -6.13222 1.22613 1.26363 1.42426 1.46422 1.57246 1.59718 2.24184 2.28428 2.92907 2.98976 3.29646 3.37899 3.67640 3.79791 3.87041 3.93476 3.96687 4.08829 4.13138 4.28974 4.35850 4.47141 4.49371 4.52971 4.62063 4.69215 4.73029 4.74303 4.75216 4.90132 4.93111 4.98396 5.01795 5.09715 5.26278 5.41522 5.49388 5.65947 5.82400 6.07847 6.08878 6.19614 6.52228 7.00303 7.06116 7.24314 8.74253 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.031321 B = 0.002487 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.741875 B =11255.295455 C =11689.723165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.169 4.169 3 C -0.118 4.118 4 C 0.089 3.911 5 N -0.517 5.517 6 C 0.064 3.936 7 C -0.117 4.117 8 C 0.151 3.849 9 H 0.073 0.927 10 N -0.704 5.704 11 C 0.534 3.466 12 O -0.565 6.565 13 C -0.129 4.129 14 S -0.149 6.149 15 C -0.546 4.546 16 H 0.082 0.918 17 C 0.012 3.988 18 N -0.912 5.912 19 Si 1.000 3.000 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.258 1.258 23 C 0.114 3.886 24 H 0.079 0.921 25 O -0.560 6.560 26 C 0.026 3.974 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.031 0.969 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.076 0.924 38 H 0.417 0.583 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.271 0.729 42 H 0.396 0.604 43 H 0.109 0.891 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.023 3.165 27.338 29.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.170 4.170 3 C -0.175 4.175 4 C -0.039 4.039 5 N -0.239 5.239 6 C -0.064 4.064 7 C -0.156 4.156 8 C 0.046 3.954 9 H 0.091 0.909 10 N -0.357 5.357 11 C 0.320 3.680 12 O -0.444 6.444 13 C -0.280 4.280 14 S 0.078 5.922 15 C -0.694 4.694 16 H 0.100 0.900 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.182 1.182 23 C 0.053 3.947 24 H 0.096 0.904 25 O -0.368 6.368 26 C -0.103 4.103 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.049 0.951 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.254 0.746 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.080 0.920 42 H 0.246 0.754 43 H 0.127 0.873 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.950 3.391 27.068 28.710 hybrid contribution 1.149 -0.069 -0.980 1.512 sum 10.099 3.322 26.088 28.171 Atomic orbital electron populations 1.23840 0.95813 1.02065 1.01326 1.22674 0.96105 0.97891 1.00376 1.20953 1.00517 0.94030 1.01975 1.21424 1.00180 0.92560 0.89695 1.62283 1.18671 1.41093 1.01882 1.21966 0.91834 0.99712 0.92928 1.21797 0.99026 0.99572 0.95244 1.21087 0.95578 0.97044 0.81671 0.90927 1.45745 1.21343 1.61446 1.07144 1.20097 0.84257 0.78034 0.85646 1.90678 1.23161 1.44676 1.85838 1.23367 1.04192 1.05252 0.95196 1.85542 1.25015 1.79233 1.02431 1.23206 1.06215 1.44854 0.95151 0.89966 1.26145 0.95466 0.95336 1.02272 1.70186 1.14199 1.43492 1.26935 0.84938 0.78751 0.78194 0.75996 1.19312 1.20213 1.18172 1.21937 0.90646 0.88303 0.93781 0.90361 1.86472 1.40264 1.34469 1.75582 1.22924 0.99125 0.92993 0.95250 0.88521 0.88537 0.90726 0.92317 0.91097 0.90108 0.88434 0.95093 0.90134 0.93822 0.90486 0.74606 0.87243 0.87538 0.91976 0.75379 0.87305 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.80 12.68 67.79 0.86 -1.94 16 2 C -0.17 -2.19 4.18 -16.48 -0.07 -2.26 16 3 C -0.12 -1.23 8.47 71.24 0.60 -0.62 16 4 C 0.09 1.08 5.50 85.56 0.47 1.55 16 5 N -0.52 -7.90 4.74 -900.91 -4.27 -12.18 16 6 C 0.06 1.29 4.90 86.32 0.42 1.71 16 7 C -0.12 -2.96 5.52 30.64 0.17 -2.79 16 8 C 0.15 3.73 2.31 45.07 0.10 3.84 16 9 H 0.07 2.12 7.58 -2.39 -0.02 2.10 16 10 N -0.70 -19.66 5.05 -442.14 -2.23 -21.90 16 11 C 0.53 20.63 7.82 87.66 0.69 21.31 16 12 O -0.57 -26.87 15.53 -3.03 -0.05 -26.92 16 13 C -0.13 -5.31 6.16 71.24 0.44 -4.87 16 14 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 15 C -0.55 -31.71 9.50 67.95 0.65 -31.06 16 16 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 17 C 0.01 0.72 5.49 84.86 0.47 1.18 16 18 N -0.91 -56.65 13.22 21.65 0.29 -56.36 16 19 Si 1.00 44.09 29.55 68.60 2.03 46.12 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 23 C 0.11 1.80 3.43 30.65 0.10 1.90 16 24 H 0.08 1.06 8.14 -2.38 -0.02 1.05 16 25 O -0.56 -8.19 12.06 -148.98 -1.80 -9.99 16 26 C 0.03 0.33 3.87 86.32 0.33 0.66 16 27 H 0.10 1.37 8.05 -2.91 -0.02 1.35 16 28 H 0.10 1.40 7.99 -2.91 -0.02 1.38 16 29 H 0.07 0.57 7.16 -2.39 -0.02 0.56 16 30 H 0.06 0.70 7.86 -2.39 -0.02 0.68 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 1.00 7.91 -2.39 -0.02 0.98 16 33 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.03 0.68 6.78 -2.39 -0.02 0.66 16 35 H 0.08 1.53 8.06 -2.39 -0.02 1.51 16 36 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 2.00 7.80 -2.38 -0.02 1.98 16 38 H 0.42 9.57 8.12 -92.71 -0.75 8.81 16 39 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 40 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 41 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 42 H 0.40 2.41 9.08 -74.05 -0.67 1.74 16 43 H 0.11 0.83 7.82 -2.39 -0.02 0.81 16 44 H 0.05 0.68 6.05 -2.38 -0.01 0.66 16 Total: -1.00 -77.20 367.06 -2.38 -79.58 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -0.42 Total: 22.66 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 5.24 Total: -11.39 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -6.22 Total: -90.43 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -1.84 Total: -36.91 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -77.20 -2.38 -79.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099687494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.030 kcal (2) G-P(sol) polarization free energy of solvation -77.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds