Wall clock time and date at job start Tue Mar 31 2020 11:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99771 * 2 1 4 4 C 1.52995 * 109.47165 * 124.99611 * 3 2 1 5 5 N 1.46501 * 109.47423 * 179.97438 * 4 3 2 6 6 C 1.35311 * 125.86550 * 124.71026 * 5 4 3 7 7 C 1.35359 * 106.17321 * 180.26815 * 6 5 4 8 8 C 1.50697 * 126.75021 * 180.02562 * 7 6 5 9 9 N 1.46505 * 109.46620 * 94.95563 * 8 7 6 10 10 C 1.39788 * 119.99709 * 179.97438 * 9 8 7 11 11 C 1.38947 * 120.00785 * 359.73113 * 10 9 8 12 12 C 1.38010 * 119.99447 * 179.71838 * 11 10 9 13 13 C 1.38896 * 120.00521 * 0.54994 * 12 11 10 14 14 O 1.35795 * 119.99488 * 179.70097 * 13 12 11 15 15 C 1.34811 * 117.00015 * 174.48252 * 14 13 12 16 16 H 1.07997 * 119.99997 * 5.05388 * 15 14 13 17 17 C 1.38623 * 120.00036 * 185.05816 * 15 14 13 18 18 N 1.31581 * 119.99985 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00021 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47004 * 89.99774 * 19 17 15 21 21 H 1.48496 * 109.47134 * 209.99978 * 19 17 15 22 22 H 1.48500 * 109.47364 * 330.00062 * 19 17 15 23 23 C 1.38900 * 120.01249 * 359.72281 * 13 12 11 24 24 C 1.38014 * 120.00443 * 0.02562 * 23 13 12 25 25 N 1.33767 * 106.49453 * 0.02562 * 7 6 5 26 26 N 1.28638 * 108.89110 * 359.97438 * 25 7 6 27 27 H 1.07998 * 120.00529 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.00029 * 179.97438 * 1 2 3 29 29 H 1.07996 * 119.99620 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47271 * 4.99543 * 3 2 1 31 31 H 1.08998 * 109.46877 * 244.99605 * 3 2 1 32 32 H 1.08998 * 109.47082 * 59.99816 * 4 3 2 33 33 H 1.09008 * 109.47173 * 299.99931 * 4 3 2 34 34 H 1.07994 * 126.91539 * 0.23577 * 6 5 4 35 35 H 1.08997 * 109.47285 * 214.95054 * 8 7 6 36 36 H 1.08997 * 109.47206 * 334.95822 * 8 7 6 37 37 H 0.96994 * 120.00271 * 359.97438 * 9 8 7 38 38 H 1.08003 * 119.99825 * 359.97438 * 11 10 9 39 39 H 1.07996 * 119.99449 * 180.25353 * 12 11 10 40 40 H 0.96997 * 120.00357 * 180.02562 * 18 17 15 41 41 H 1.07999 * 119.99836 * 179.97438 * 23 13 12 42 42 H 1.07995 * 120.00261 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 7 3.7678 2.6017 1.1813 6 6 3.8351 3.4787 2.2096 7 6 4.6047 4.5057 1.7795 8 6 4.9812 5.7387 2.5598 9 7 6.2870 5.5363 3.1925 10 6 6.8496 6.5496 3.9740 11 6 6.1730 7.7510 4.1462 12 6 6.7260 8.7491 4.9226 13 6 7.9640 8.5570 5.5224 14 8 8.5107 9.5415 6.2813 15 6 9.6576 9.2508 6.9275 16 1 10.1431 8.3001 6.7644 17 6 10.2136 10.1722 7.8012 18 7 9.6222 11.3308 7.9996 19 14 11.8024 9.7691 8.6971 20 1 12.9586 10.2180 7.8805 21 1 11.8219 10.4661 10.0082 22 1 11.8897 8.3027 8.9147 23 6 8.6431 7.3583 5.3458 24 6 8.0882 6.3579 4.5738 25 7 4.9653 4.2109 0.5255 26 7 4.4535 3.0763 0.2008 27 1 -0.5401 0.9352 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6213 1.4026 -0.9313 32 1 3.7399 0.5067 1.0922 33 1 2.4771 1.2357 2.1131 34 1 3.3683 3.3794 3.1784 35 1 5.0329 6.5937 1.8857 36 1 4.2306 5.9261 3.3276 37 1 6.7611 4.6991 3.0692 38 1 5.2126 7.9021 3.6759 39 1 6.1983 9.6813 5.0597 40 1 10.0114 11.9757 8.6107 41 1 9.6059 7.2094 5.8120 42 1 8.6164 5.4261 4.4362 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118481068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:42 Heat of formation + Delta-G solvation = 124.597149 kcal Electronic energy + Delta-G solvation = -23641.308261 eV Core-core repulsion = 20011.281276 eV Total energy + Delta-G solvation = -3630.026985 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.56926 -38.97595 -37.25890 -36.85157 -34.85970 -33.92285 -32.14670 -31.42203 -30.17747 -29.99343 -27.82107 -25.89289 -25.13924 -24.66784 -22.42200 -21.94039 -21.09075 -20.56369 -20.51381 -17.89863 -17.55921 -17.14437 -16.73271 -16.39857 -15.97286 -15.24698 -15.16936 -14.62589 -14.40778 -14.17883 -13.90241 -13.65198 -13.46518 -13.41912 -13.22811 -12.87882 -12.53743 -12.37204 -12.16244 -11.85227 -11.78399 -11.52420 -11.47632 -11.26939 -11.05902 -10.87536 -10.55257 -10.44767 -10.32599 -10.01561 -9.55531 -9.20237 -9.13269 -8.40934 -8.12020 -6.36192 -6.28585 -3.85795 1.23449 1.55473 1.99262 2.18516 2.25351 2.61965 3.21316 3.21807 3.26360 3.83684 4.02822 4.05589 4.09313 4.14710 4.29919 4.53915 4.56225 4.60117 4.71947 4.81663 4.95562 5.17092 5.24024 5.27571 5.32368 5.46030 5.50420 5.71032 5.80222 5.80604 5.88655 5.94363 6.05235 6.22329 6.25613 6.28363 6.58563 6.90732 6.94651 7.18110 7.36108 7.49516 7.68289 8.00434 8.15796 8.23471 8.26892 9.17316 9.92273 10.90059 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.042942 B = 0.001772 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.885766 B =15798.246333 C =15983.538730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C -0.106 4.106 4 C 0.120 3.880 5 N -0.295 5.295 6 C -0.032 4.032 7 C -0.030 4.030 8 C 0.222 3.778 9 N -0.755 5.755 10 C 0.126 3.874 11 C -0.146 4.146 12 C -0.150 4.150 13 C 0.113 3.887 14 O -0.189 6.189 15 C -0.386 4.386 16 H 0.088 0.912 17 C 0.036 3.964 18 N -0.869 5.869 19 Si 0.937 3.063 20 H -0.275 1.275 21 H -0.279 1.279 22 H -0.269 1.269 23 C -0.189 4.189 24 C -0.140 4.140 25 N -0.252 5.252 26 N -0.086 5.086 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.192 0.808 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.391 0.609 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.267 0.733 41 H 0.127 0.873 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.074 -22.489 -12.182 30.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.178 4.178 3 C -0.144 4.144 4 C -0.001 4.001 5 N -0.088 5.088 6 C -0.184 4.184 7 C -0.169 4.169 8 C 0.095 3.905 9 N -0.391 5.391 10 C 0.028 3.972 11 C -0.168 4.168 12 C -0.169 4.169 13 C 0.061 3.939 14 O -0.094 6.094 15 C -0.463 4.463 16 H 0.105 0.895 17 C -0.167 4.167 18 N -0.506 5.506 19 Si 0.763 3.237 20 H -0.201 1.201 21 H -0.204 1.204 22 H -0.194 1.194 23 C -0.209 4.209 24 C -0.163 4.163 25 N -0.120 5.120 26 N -0.065 5.065 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.133 0.867 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.209 0.791 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.224 0.776 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.076 0.924 41 H 0.145 0.855 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.801 -22.204 -13.491 30.941 hybrid contribution 0.541 -0.675 1.489 1.722 sum -16.260 -22.879 -12.002 30.527 Atomic orbital electron populations 1.23976 0.95872 1.02365 0.99370 1.22731 0.96026 0.97606 1.01451 1.21021 0.97987 0.96865 0.98553 1.22117 0.94715 0.81496 1.01774 1.47443 1.33934 1.17347 1.10048 1.23511 1.06446 0.91979 0.96449 1.22083 1.02124 0.99295 0.93358 1.19202 0.86470 0.91137 0.93687 1.44127 1.20387 1.17359 1.57259 1.17357 0.93884 0.89318 0.96622 1.20172 1.00208 0.92916 1.03496 1.20017 0.94842 0.99876 1.02207 1.19246 0.92517 0.88682 0.93486 1.83985 1.37751 1.33177 1.54486 1.21232 0.98653 1.03553 1.22866 0.89469 1.25203 0.99392 0.95157 0.96928 1.70048 1.38893 1.06449 1.35198 0.85772 0.80627 0.78623 0.78725 1.20082 1.20445 1.19402 1.20986 1.01833 0.94261 1.03839 1.20221 0.94976 0.99273 1.01796 1.75141 1.18340 1.05893 1.12581 1.78308 1.08439 1.06725 1.13026 0.88358 0.87942 0.86665 0.90523 0.88940 0.88029 0.87407 0.79062 0.91093 0.91184 0.77552 0.87023 0.86483 0.92351 0.85527 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.60 14.32 29.01 0.42 -0.19 16 2 C -0.16 -0.54 9.52 -36.03 -0.34 -0.88 16 3 C -0.11 -0.47 5.78 -27.88 -0.16 -0.63 16 4 C 0.12 0.50 6.44 -4.04 -0.03 0.48 16 5 N -0.29 -2.45 3.44 -61.26 -0.21 -2.67 16 6 C -0.03 -0.27 11.50 -17.04 -0.20 -0.46 16 7 C -0.03 -0.34 6.62 -82.78 -0.55 -0.89 16 8 C 0.22 2.62 5.47 -5.19 -0.03 2.59 16 9 N -0.75 -10.58 5.73 -59.76 -0.34 -10.92 16 10 C 0.13 2.20 6.66 -83.70 -0.56 1.64 16 11 C -0.15 -2.63 9.30 -39.40 -0.37 -3.00 16 12 C -0.15 -3.20 9.98 -39.42 -0.39 -3.60 16 13 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16 14 O -0.19 -5.53 9.76 -0.04 0.00 -5.53 16 15 C -0.39 -11.08 9.48 30.87 0.29 -10.79 16 16 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 17 C 0.04 1.02 5.49 -17.52 -0.10 0.92 16 18 N -0.87 -26.16 13.67 55.48 0.76 -25.40 16 19 Si 0.94 21.11 29.55 -169.99 -5.02 16.08 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 C -0.19 -4.21 9.16 -39.42 -0.36 -4.57 16 24 C -0.14 -2.65 9.89 -39.40 -0.39 -3.04 16 25 N -0.25 -3.46 12.41 33.29 0.41 -3.05 16 26 N -0.09 -1.02 12.91 60.35 0.78 -0.24 16 27 H 0.10 0.32 7.84 -52.49 -0.41 -0.09 16 28 H 0.10 0.26 8.06 -52.48 -0.42 -0.17 16 29 H 0.12 0.27 8.06 -52.49 -0.42 -0.15 16 30 H 0.08 0.38 7.79 -51.93 -0.40 -0.03 16 31 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.11 0.20 8.07 -51.92 -0.42 -0.22 16 34 H 0.19 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.07 0.90 7.94 -51.93 -0.41 0.48 16 36 H 0.07 0.72 7.96 -51.93 -0.41 0.30 16 37 H 0.39 5.21 8.48 -40.82 -0.35 4.86 16 38 H 0.11 1.68 6.73 -52.48 -0.35 1.33 16 39 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.13 2.82 5.63 -52.49 -0.30 2.53 16 42 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -34.63 365.54 -6.56 -41.19 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.42 Total: 4.91 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -3.02 Total: -19.88 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 1.40 Total: -42.27 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: 0.00 Total: -5.53 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.63 -6.56 -41.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118481068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.783 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds