Wall clock time and date at job start Tue Mar 31 2020 11:42:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31003 * 1
3 3 C 1.50701 * 119.99771 * 2 1
4 4 C 1.52995 * 109.47165 * 124.99611 * 3 2 1
5 5 N 1.46501 * 109.47423 * 179.97438 * 4 3 2
6 6 C 1.35311 * 125.86550 * 124.71026 * 5 4 3
7 7 C 1.35359 * 106.17321 * 180.26815 * 6 5 4
8 8 C 1.50697 * 126.75021 * 180.02562 * 7 6 5
9 9 N 1.46505 * 109.46620 * 94.95563 * 8 7 6
10 10 C 1.39788 * 119.99709 * 179.97438 * 9 8 7
11 11 C 1.38947 * 120.00785 * 359.73113 * 10 9 8
12 12 C 1.38010 * 119.99447 * 179.71838 * 11 10 9
13 13 C 1.38896 * 120.00521 * 0.54994 * 12 11 10
14 14 O 1.35795 * 119.99488 * 179.70097 * 13 12 11
15 15 C 1.34811 * 117.00015 * 174.48252 * 14 13 12
16 16 H 1.07997 * 119.99997 * 5.05388 * 15 14 13
17 17 C 1.38623 * 120.00036 * 185.05816 * 15 14 13
18 18 N 1.31581 * 119.99985 * 359.97438 * 17 15 14
19 19 Si 1.86798 * 120.00021 * 179.97438 * 17 15 14
20 20 H 1.48497 * 109.47004 * 89.99774 * 19 17 15
21 21 H 1.48496 * 109.47134 * 209.99978 * 19 17 15
22 22 H 1.48500 * 109.47364 * 330.00062 * 19 17 15
23 23 C 1.38900 * 120.01249 * 359.72281 * 13 12 11
24 24 C 1.38014 * 120.00443 * 0.02562 * 23 13 12
25 25 N 1.33767 * 106.49453 * 0.02562 * 7 6 5
26 26 N 1.28638 * 108.89110 * 359.97438 * 25 7 6
27 27 H 1.07998 * 120.00529 * 0.02562 * 1 2 3
28 28 H 1.08005 * 120.00029 * 179.97438 * 1 2 3
29 29 H 1.07996 * 119.99620 * 179.97438 * 2 1 3
30 30 H 1.08998 * 109.47271 * 4.99543 * 3 2 1
31 31 H 1.08998 * 109.46877 * 244.99605 * 3 2 1
32 32 H 1.08998 * 109.47082 * 59.99816 * 4 3 2
33 33 H 1.09008 * 109.47173 * 299.99931 * 4 3 2
34 34 H 1.07994 * 126.91539 * 0.23577 * 6 5 4
35 35 H 1.08997 * 109.47285 * 214.95054 * 8 7 6
36 36 H 1.08997 * 109.47206 * 334.95822 * 8 7 6
37 37 H 0.96994 * 120.00271 * 359.97438 * 9 8 7
38 38 H 1.08003 * 119.99825 * 359.97438 * 11 10 9
39 39 H 1.07996 * 119.99449 * 180.25353 * 12 11 10
40 40 H 0.96997 * 120.00357 * 180.02562 * 18 17 15
41 41 H 1.07999 * 119.99836 * 179.97438 * 23 13 12
42 42 H 1.07995 * 120.00261 * 179.97438 * 24 23 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 6 3.0349 1.3332 1.1816
5 7 3.7678 2.6017 1.1813
6 6 3.8351 3.4787 2.2096
7 6 4.6047 4.5057 1.7795
8 6 4.9812 5.7387 2.5598
9 7 6.2870 5.5363 3.1925
10 6 6.8496 6.5496 3.9740
11 6 6.1730 7.7510 4.1462
12 6 6.7260 8.7491 4.9226
13 6 7.9640 8.5570 5.5224
14 8 8.5107 9.5415 6.2813
15 6 9.6576 9.2508 6.9275
16 1 10.1431 8.3001 6.7644
17 6 10.2136 10.1722 7.8012
18 7 9.6222 11.3308 7.9996
19 14 11.8024 9.7691 8.6971
20 1 12.9586 10.2180 7.8805
21 1 11.8219 10.4661 10.0082
22 1 11.8897 8.3027 8.9147
23 6 8.6431 7.3583 5.3458
24 6 8.0882 6.3579 4.5738
25 7 4.9653 4.2109 0.5255
26 7 4.4535 3.0763 0.2008
27 1 -0.5401 0.9352 -0.0004
28 1 -0.5400 -0.9353 -0.0004
29 1 1.8499 -0.9353 0.0004
30 1 1.3585 2.1316 0.0895
31 1 2.6213 1.4026 -0.9313
32 1 3.7399 0.5067 1.0922
33 1 2.4771 1.2357 2.1131
34 1 3.3683 3.3794 3.1784
35 1 5.0329 6.5937 1.8857
36 1 4.2306 5.9261 3.3276
37 1 6.7611 4.6991 3.0692
38 1 5.2126 7.9021 3.6759
39 1 6.1983 9.6813 5.0597
40 1 10.0114 11.9757 8.6107
41 1 9.6059 7.2094 5.8120
42 1 8.6164 5.4261 4.4362
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001118481068.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:42:42
Heat of formation + Delta-G solvation = 124.597149 kcal
Electronic energy + Delta-G solvation = -23641.308261 eV
Core-core repulsion = 20011.281276 eV
Total energy + Delta-G solvation = -3630.026985 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.148 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-43.56926 -38.97595 -37.25890 -36.85157 -34.85970 -33.92285 -32.14670 -31.42203
-30.17747 -29.99343 -27.82107 -25.89289 -25.13924 -24.66784 -22.42200 -21.94039
-21.09075 -20.56369 -20.51381 -17.89863 -17.55921 -17.14437 -16.73271 -16.39857
-15.97286 -15.24698 -15.16936 -14.62589 -14.40778 -14.17883 -13.90241 -13.65198
-13.46518 -13.41912 -13.22811 -12.87882 -12.53743 -12.37204 -12.16244 -11.85227
-11.78399 -11.52420 -11.47632 -11.26939 -11.05902 -10.87536 -10.55257 -10.44767
-10.32599 -10.01561 -9.55531 -9.20237 -9.13269 -8.40934 -8.12020 -6.36192
-6.28585 -3.85795 1.23449 1.55473 1.99262 2.18516 2.25351 2.61965
3.21316 3.21807 3.26360 3.83684 4.02822 4.05589 4.09313 4.14710
4.29919 4.53915 4.56225 4.60117 4.71947 4.81663 4.95562 5.17092
5.24024 5.27571 5.32368 5.46030 5.50420 5.71032 5.80222 5.80604
5.88655 5.94363 6.05235 6.22329 6.25613 6.28363 6.58563 6.90732
6.94651 7.18110 7.36108 7.49516 7.68289 8.00434 8.15796 8.23471
8.26892 9.17316 9.92273 10.90059
Molecular weight = 314.15amu
Principal moments of inertia in cm(-1)
A = 0.042942 B = 0.001772 C = 0.001751
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 651.885766 B =15798.246333 C =15983.538730
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.160 4.160
3 C -0.106 4.106
4 C 0.120 3.880
5 N -0.295 5.295
6 C -0.032 4.032
7 C -0.030 4.030
8 C 0.222 3.778
9 N -0.755 5.755
10 C 0.126 3.874
11 C -0.146 4.146
12 C -0.150 4.150
13 C 0.113 3.887
14 O -0.189 6.189
15 C -0.386 4.386
16 H 0.088 0.912
17 C 0.036 3.964
18 N -0.869 5.869
19 Si 0.937 3.063
20 H -0.275 1.275
21 H -0.279 1.279
22 H -0.269 1.269
23 C -0.189 4.189
24 C -0.140 4.140
25 N -0.252 5.252
26 N -0.086 5.086
27 H 0.098 0.902
28 H 0.102 0.898
29 H 0.115 0.885
30 H 0.076 0.924
31 H 0.092 0.908
32 H 0.102 0.898
33 H 0.108 0.892
34 H 0.192 0.808
35 H 0.071 0.929
36 H 0.070 0.930
37 H 0.391 0.609
38 H 0.112 0.888
39 H 0.117 0.883
40 H 0.267 0.733
41 H 0.127 0.873
42 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.074 -22.489 -12.182 30.752
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C -0.178 4.178
3 C -0.144 4.144
4 C -0.001 4.001
5 N -0.088 5.088
6 C -0.184 4.184
7 C -0.169 4.169
8 C 0.095 3.905
9 N -0.391 5.391
10 C 0.028 3.972
11 C -0.168 4.168
12 C -0.169 4.169
13 C 0.061 3.939
14 O -0.094 6.094
15 C -0.463 4.463
16 H 0.105 0.895
17 C -0.167 4.167
18 N -0.506 5.506
19 Si 0.763 3.237
20 H -0.201 1.201
21 H -0.204 1.204
22 H -0.194 1.194
23 C -0.209 4.209
24 C -0.163 4.163
25 N -0.120 5.120
26 N -0.065 5.065
27 H 0.116 0.884
28 H 0.121 0.879
29 H 0.133 0.867
30 H 0.095 0.905
31 H 0.111 0.889
32 H 0.120 0.880
33 H 0.126 0.874
34 H 0.209 0.791
35 H 0.089 0.911
36 H 0.088 0.912
37 H 0.224 0.776
38 H 0.130 0.870
39 H 0.135 0.865
40 H 0.076 0.924
41 H 0.145 0.855
42 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -16.801 -22.204 -13.491 30.941
hybrid contribution 0.541 -0.675 1.489 1.722
sum -16.260 -22.879 -12.002 30.527
Atomic orbital electron populations
1.23976 0.95872 1.02365 0.99370 1.22731 0.96026 0.97606 1.01451
1.21021 0.97987 0.96865 0.98553 1.22117 0.94715 0.81496 1.01774
1.47443 1.33934 1.17347 1.10048 1.23511 1.06446 0.91979 0.96449
1.22083 1.02124 0.99295 0.93358 1.19202 0.86470 0.91137 0.93687
1.44127 1.20387 1.17359 1.57259 1.17357 0.93884 0.89318 0.96622
1.20172 1.00208 0.92916 1.03496 1.20017 0.94842 0.99876 1.02207
1.19246 0.92517 0.88682 0.93486 1.83985 1.37751 1.33177 1.54486
1.21232 0.98653 1.03553 1.22866 0.89469 1.25203 0.99392 0.95157
0.96928 1.70048 1.38893 1.06449 1.35198 0.85772 0.80627 0.78623
0.78725 1.20082 1.20445 1.19402 1.20986 1.01833 0.94261 1.03839
1.20221 0.94976 0.99273 1.01796 1.75141 1.18340 1.05893 1.12581
1.78308 1.08439 1.06725 1.13026 0.88358 0.87942 0.86665 0.90523
0.88940 0.88029 0.87407 0.79062 0.91093 0.91184 0.77552 0.87023
0.86483 0.92351 0.85527 0.87692
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -0.60 14.32 29.01 0.42 -0.19 16
2 C -0.16 -0.54 9.52 -36.03 -0.34 -0.88 16
3 C -0.11 -0.47 5.78 -27.88 -0.16 -0.63 16
4 C 0.12 0.50 6.44 -4.04 -0.03 0.48 16
5 N -0.29 -2.45 3.44 -61.26 -0.21 -2.67 16
6 C -0.03 -0.27 11.50 -17.04 -0.20 -0.46 16
7 C -0.03 -0.34 6.62 -82.78 -0.55 -0.89 16
8 C 0.22 2.62 5.47 -5.19 -0.03 2.59 16
9 N -0.75 -10.58 5.73 -59.76 -0.34 -10.92 16
10 C 0.13 2.20 6.66 -83.70 -0.56 1.64 16
11 C -0.15 -2.63 9.30 -39.40 -0.37 -3.00 16
12 C -0.15 -3.20 9.98 -39.42 -0.39 -3.60 16
13 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16
14 O -0.19 -5.53 9.76 -0.04 0.00 -5.53 16
15 C -0.39 -11.08 9.48 30.87 0.29 -10.79 16
16 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16
17 C 0.04 1.02 5.49 -17.52 -0.10 0.92 16
18 N -0.87 -26.16 13.67 55.48 0.76 -25.40 16
19 Si 0.94 21.11 29.55 -169.99 -5.02 16.08 16
20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16
21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16
22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16
23 C -0.19 -4.21 9.16 -39.42 -0.36 -4.57 16
24 C -0.14 -2.65 9.89 -39.40 -0.39 -3.04 16
25 N -0.25 -3.46 12.41 33.29 0.41 -3.05 16
26 N -0.09 -1.02 12.91 60.35 0.78 -0.24 16
27 H 0.10 0.32 7.84 -52.49 -0.41 -0.09 16
28 H 0.10 0.26 8.06 -52.48 -0.42 -0.17 16
29 H 0.12 0.27 8.06 -52.49 -0.42 -0.15 16
30 H 0.08 0.38 7.79 -51.93 -0.40 -0.03 16
31 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16
32 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16
33 H 0.11 0.20 8.07 -51.92 -0.42 -0.22 16
34 H 0.19 0.93 8.06 -52.49 -0.42 0.50 16
35 H 0.07 0.90 7.94 -51.93 -0.41 0.48 16
36 H 0.07 0.72 7.96 -51.93 -0.41 0.30 16
37 H 0.39 5.21 8.48 -40.82 -0.35 4.86 16
38 H 0.11 1.68 6.73 -52.48 -0.35 1.33 16
39 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16
40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16
41 H 0.13 2.82 5.63 -52.49 -0.30 2.53 16
42 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16
LS Contribution 365.54 15.07 5.51 5.51
Total: -1.00 -34.63 365.54 -6.56 -41.19
By element:
Atomic # 1 Polarization: 10.33 SS G_CDS: -5.42 Total: 4.91 kcal
Atomic # 6 Polarization: -16.86 SS G_CDS: -3.02 Total: -19.88 kcal
Atomic # 7 Polarization: -43.67 SS G_CDS: 1.40 Total: -42.27 kcal
Atomic # 8 Polarization: -5.53 SS G_CDS: 0.00 Total: -5.53 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -34.63 -6.56 -41.19 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118481068.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 165.783 kcal
(2) G-P(sol) polarization free energy of solvation -34.629 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.154 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.186 kcal
(6) G-S(sol) free energy of system = (1) + (5) 124.597 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds