Wall clock time and date at job start Tue Mar 31 2020 11:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99771 * 2 1 4 4 C 1.52995 * 109.47165 * 124.99611 * 3 2 1 5 5 N 1.46501 * 109.47423 * 179.97438 * 4 3 2 6 6 C 1.35311 * 125.86550 * 124.71026 * 5 4 3 7 7 C 1.35359 * 106.17321 * 180.26815 * 6 5 4 8 8 C 1.50697 * 126.75021 * 180.02562 * 7 6 5 9 9 N 1.46505 * 109.46620 * 94.95563 * 8 7 6 10 10 C 1.39788 * 119.99709 * 179.97438 * 9 8 7 11 11 C 1.38947 * 120.00785 * 359.73113 * 10 9 8 12 12 C 1.38010 * 119.99447 * 179.71838 * 11 10 9 13 13 C 1.38896 * 120.00521 * 0.54994 * 12 11 10 14 14 O 1.35795 * 119.99488 * 179.70097 * 13 12 11 15 15 C 1.34811 * 117.00015 * 174.48252 * 14 13 12 16 16 H 1.07997 * 119.99997 * 5.05388 * 15 14 13 17 17 C 1.38623 * 120.00036 * 185.05816 * 15 14 13 18 18 N 1.31581 * 119.99985 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00021 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47004 * 89.99774 * 19 17 15 21 21 H 1.48496 * 109.47134 * 209.99978 * 19 17 15 22 22 H 1.48500 * 109.47364 * 330.00062 * 19 17 15 23 23 C 1.38900 * 120.01249 * 359.72281 * 13 12 11 24 24 C 1.38014 * 120.00443 * 0.02562 * 23 13 12 25 25 N 1.33767 * 106.49453 * 0.02562 * 7 6 5 26 26 N 1.28638 * 108.89110 * 359.97438 * 25 7 6 27 27 H 1.07998 * 120.00529 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.00029 * 179.97438 * 1 2 3 29 29 H 1.07996 * 119.99620 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47271 * 4.99543 * 3 2 1 31 31 H 1.08998 * 109.46877 * 244.99605 * 3 2 1 32 32 H 1.08998 * 109.47082 * 59.99816 * 4 3 2 33 33 H 1.09008 * 109.47173 * 299.99931 * 4 3 2 34 34 H 1.07994 * 126.91539 * 0.23577 * 6 5 4 35 35 H 1.08997 * 109.47285 * 214.95054 * 8 7 6 36 36 H 1.08997 * 109.47206 * 334.95822 * 8 7 6 37 37 H 0.96994 * 120.00271 * 359.97438 * 9 8 7 38 38 H 1.08003 * 119.99825 * 359.97438 * 11 10 9 39 39 H 1.07996 * 119.99449 * 180.25353 * 12 11 10 40 40 H 0.96997 * 120.00357 * 180.02562 * 18 17 15 41 41 H 1.07999 * 119.99836 * 179.97438 * 23 13 12 42 42 H 1.07995 * 120.00261 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 7 3.7678 2.6017 1.1813 6 6 3.8351 3.4787 2.2096 7 6 4.6047 4.5057 1.7795 8 6 4.9812 5.7387 2.5598 9 7 6.2870 5.5363 3.1925 10 6 6.8496 6.5496 3.9740 11 6 6.1730 7.7510 4.1462 12 6 6.7260 8.7491 4.9226 13 6 7.9640 8.5570 5.5224 14 8 8.5107 9.5415 6.2813 15 6 9.6576 9.2508 6.9275 16 1 10.1431 8.3001 6.7644 17 6 10.2136 10.1722 7.8012 18 7 9.6222 11.3308 7.9996 19 14 11.8024 9.7691 8.6971 20 1 12.9586 10.2180 7.8805 21 1 11.8219 10.4661 10.0082 22 1 11.8897 8.3027 8.9147 23 6 8.6431 7.3583 5.3458 24 6 8.0882 6.3579 4.5738 25 7 4.9653 4.2109 0.5255 26 7 4.4535 3.0763 0.2008 27 1 -0.5401 0.9352 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6213 1.4026 -0.9313 32 1 3.7399 0.5067 1.0922 33 1 2.4771 1.2357 2.1131 34 1 3.3683 3.3794 3.1784 35 1 5.0329 6.5937 1.8857 36 1 4.2306 5.9261 3.3276 37 1 6.7611 4.6991 3.0692 38 1 5.2126 7.9021 3.6759 39 1 6.1983 9.6813 5.0597 40 1 10.0114 11.9757 8.6107 41 1 9.6059 7.2094 5.8120 42 1 8.6164 5.4261 4.4362 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118481068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:41 Heat of formation + Delta-G solvation = 101.325145 kcal Electronic energy + Delta-G solvation = -23642.317410 eV Core-core repulsion = 20011.281276 eV Total energy + Delta-G solvation = -3631.036135 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.30396 -40.66672 -38.76831 -37.43646 -36.04453 -34.62383 -34.08088 -32.49423 -31.73804 -30.49593 -29.16164 -27.53256 -26.25768 -25.60579 -23.75358 -22.83312 -22.36192 -21.74085 -20.79025 -19.65331 -18.83897 -18.35918 -17.75127 -17.39135 -16.61843 -16.33967 -16.15029 -15.95565 -15.56919 -15.35419 -15.24637 -14.98443 -14.80120 -14.44300 -14.10009 -14.01916 -13.84369 -13.41117 -13.40639 -13.04883 -12.95433 -12.71325 -12.54903 -12.44440 -12.22209 -12.07588 -12.03478 -11.81783 -11.11098 -11.05666 -10.89346 -10.32704 -10.30301 -10.16120 -9.72917 -8.36658 -7.91153 -6.00062 0.57889 0.63318 0.97143 1.22826 1.32699 1.38329 1.48077 1.53695 1.55536 2.24829 2.84080 2.94758 3.27424 3.29737 3.60066 3.71827 3.76421 3.88600 3.99516 4.16065 4.17021 4.22969 4.26069 4.36028 4.45516 4.57265 4.61574 4.72975 4.74628 4.92793 4.99240 4.99717 5.04413 5.11081 5.16564 5.31803 5.49886 5.58853 5.61816 5.72031 5.81133 5.82467 6.01519 6.14641 6.61715 6.98332 7.09338 7.46356 7.96638 8.87803 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.042942 B = 0.001772 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.885766 B =15798.246333 C =15983.538730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.160 4.160 3 C -0.101 4.101 4 C 0.113 3.887 5 N -0.285 5.285 6 C -0.010 4.010 7 C -0.052 4.052 8 C 0.220 3.780 9 N -0.742 5.742 10 C 0.156 3.844 11 C -0.142 4.142 12 C -0.153 4.153 13 C 0.061 3.939 14 O -0.243 6.243 15 C -0.406 4.406 16 H 0.098 0.902 17 C -0.028 4.028 18 N -0.926 5.926 19 Si 1.016 2.984 20 H -0.266 1.266 21 H -0.272 1.272 22 H -0.254 1.254 23 C -0.193 4.193 24 C -0.146 4.146 25 N -0.295 5.295 26 N -0.113 5.113 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.127 0.873 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.140 0.860 34 H 0.233 0.767 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.398 0.602 38 H 0.149 0.851 39 H 0.115 0.885 40 H 0.269 0.731 41 H 0.117 0.883 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.382 -25.929 -12.427 34.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.179 4.179 3 C -0.139 4.139 4 C -0.006 4.006 5 N -0.078 5.078 6 C -0.163 4.163 7 C -0.191 4.191 8 C 0.095 3.905 9 N -0.377 5.377 10 C 0.055 3.945 11 C -0.164 4.164 12 C -0.173 4.173 13 C 0.012 3.988 14 O -0.151 6.151 15 C -0.482 4.482 16 H 0.115 0.885 17 C -0.224 4.224 18 N -0.566 5.566 19 Si 0.836 3.164 20 H -0.191 1.191 21 H -0.197 1.197 22 H -0.178 1.178 23 C -0.213 4.213 24 C -0.168 4.168 25 N -0.162 5.162 26 N -0.093 5.093 27 H 0.114 0.886 28 H 0.130 0.870 29 H 0.145 0.855 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.132 0.868 33 H 0.158 0.842 34 H 0.249 0.751 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.233 0.767 38 H 0.166 0.834 39 H 0.133 0.867 40 H 0.078 0.922 41 H 0.135 0.865 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.157 -25.735 -13.820 34.394 hybrid contribution 0.644 0.114 1.301 1.456 sum -17.512 -25.621 -12.519 33.464 Atomic orbital electron populations 1.24108 0.96029 1.02786 0.99099 1.22751 0.96003 0.97472 1.01624 1.20930 0.97748 0.97286 0.97949 1.22531 0.94895 0.80087 1.03134 1.47784 1.32704 1.18049 1.09248 1.24062 1.04460 0.90394 0.97361 1.22070 1.03812 1.00177 0.93046 1.19333 0.85581 0.91449 0.94164 1.44235 1.21197 1.16509 1.55722 1.17460 0.92851 0.89545 0.94645 1.20468 1.01439 0.92051 1.02472 1.20248 0.93952 1.00864 1.02218 1.19761 0.94384 0.89490 0.95187 1.83931 1.38730 1.35638 1.56790 1.21745 0.99084 1.04220 1.23193 0.88516 1.26501 1.03447 0.94798 0.97662 1.70203 1.41438 1.08004 1.36948 0.84621 0.75405 0.79149 0.77239 1.19089 1.19718 1.17776 1.21026 1.01531 0.94368 1.04384 1.20455 0.95723 0.99496 1.01143 1.75084 1.19900 1.07050 1.14155 1.78244 1.09820 1.06748 1.14447 0.88571 0.87028 0.85479 0.91217 0.90776 0.86753 0.84163 0.75074 0.91879 0.88551 0.76732 0.83382 0.86675 0.92204 0.86492 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.86 14.32 67.78 0.97 0.11 16 2 C -0.16 -0.72 9.52 25.64 0.24 -0.47 16 3 C -0.10 -0.69 5.78 29.85 0.17 -0.52 16 4 C 0.11 0.57 6.44 86.38 0.56 1.12 16 5 N -0.28 -3.89 3.44 -347.73 -1.20 -5.09 16 6 C -0.01 -0.13 11.50 83.49 0.96 0.83 16 7 C -0.05 -1.02 6.62 41.60 0.28 -0.75 16 8 C 0.22 4.39 5.47 85.63 0.47 4.86 16 9 N -0.74 -18.04 5.73 -342.97 -1.96 -20.01 16 10 C 0.16 4.98 6.66 38.21 0.25 5.24 16 11 C -0.14 -4.81 9.30 22.39 0.21 -4.61 16 12 C -0.15 -6.62 9.98 22.37 0.22 -6.40 16 13 C 0.06 3.14 6.65 22.59 0.15 3.29 16 14 O -0.24 -15.08 9.76 -23.05 -0.22 -15.31 16 15 C -0.41 -24.38 9.48 67.91 0.64 -23.74 16 16 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 17 C -0.03 -1.64 5.49 84.82 0.47 -1.17 16 18 N -0.93 -58.46 13.67 21.61 0.30 -58.17 16 19 Si 1.02 44.28 29.55 68.60 2.03 46.31 16 20 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 22 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 23 C -0.19 -8.69 9.16 22.38 0.20 -8.48 16 24 C -0.15 -5.22 9.89 22.39 0.22 -5.00 16 25 N -0.30 -7.65 12.41 -48.60 -0.60 -8.25 16 26 N -0.11 -2.54 12.91 37.02 0.48 -2.06 16 27 H 0.10 0.48 7.84 -2.91 -0.02 0.45 16 28 H 0.11 0.32 8.06 -2.91 -0.02 0.29 16 29 H 0.13 0.26 8.06 -2.91 -0.02 0.24 16 30 H 0.07 0.57 7.79 -2.39 -0.02 0.55 16 31 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 32 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.14 -0.16 8.07 -2.38 -0.02 -0.18 16 34 H 0.23 0.83 8.06 -2.91 -0.02 0.81 16 35 H 0.06 1.40 7.94 -2.39 -0.02 1.39 16 36 H 0.10 1.49 7.96 -2.39 -0.02 1.47 16 37 H 0.40 9.08 8.48 -92.71 -0.79 8.29 16 38 H 0.15 3.91 6.73 -2.91 -0.02 3.89 16 39 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 40 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 41 H 0.12 5.36 5.63 -2.91 -0.02 5.35 16 42 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -81.31 365.54 5.09 -76.22 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.26 Total: 22.02 kcal Atomic # 6 Polarization: -41.69 SS G_CDS: 6.02 Total: -35.67 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -2.99 Total: -93.58 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.22 Total: -15.31 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -81.31 5.09 -76.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118481068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.550 kcal (2) G-P(sol) polarization free energy of solvation -81.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds