Wall clock time and date at job start Tue Mar 31 2020 10:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30048 * 126.18008 * 2 1 4 4 O 1.21282 * 110.51573 * 179.73351 * 3 2 1 5 5 C 1.34245 * 109.68700 * 0.47056 * 4 3 2 6 6 C 1.47527 * 126.69297 * 179.80289 * 5 4 3 7 7 C 1.39874 * 120.60433 * 179.66140 * 6 5 4 8 8 C 1.38419 * 118.36786 * 180.02562 * 7 6 5 9 9 C 1.38308 * 119.49579 * 0.02562 * 8 7 6 10 10 N 1.31898 * 121.20042 * 359.72732 * 9 8 7 11 11 C 1.32373 * 121.77662 * 0.55767 * 10 9 8 12 12 N 1.38463 * 119.81946 * 179.71078 * 11 10 9 13 13 C 1.46493 * 120.00038 * 359.73729 * 12 11 10 14 14 H 1.08996 * 109.41676 * 324.85648 * 13 12 11 15 15 C 1.52959 * 109.35768 * 84.67960 * 13 12 11 16 16 C 1.53664 * 109.32566 * 183.79931 * 15 13 12 17 17 C 1.51265 * 108.30981 * 305.13871 * 16 15 13 18 18 C 1.37885 * 120.84832 * 231.38282 * 17 16 15 19 19 N 1.31516 * 119.99913 * 180.28091 * 18 17 16 20 20 Si 1.86805 * 119.99854 * 0.02562 * 18 17 16 21 21 H 1.48498 * 109.46909 * 90.00086 * 20 18 17 22 22 H 1.48497 * 109.46701 * 209.99996 * 20 18 17 23 23 H 1.48500 * 109.46867 * 330.00101 * 20 18 17 24 24 C 1.51267 * 118.30208 * 51.65598 * 17 16 15 25 25 C 1.52958 * 109.41560 * 204.99268 * 13 12 11 26 26 N 1.32255 * 106.61954 * 359.53646 * 5 4 3 27 27 H 1.08993 * 109.47735 * 269.96618 * 1 2 3 28 28 H 1.08999 * 109.46875 * 29.96542 * 1 2 3 29 29 H 1.08998 * 109.47242 * 149.96018 * 1 2 3 30 30 H 1.07998 * 120.81723 * 0.04337 * 7 6 5 31 31 H 1.08003 * 120.24894 * 179.97438 * 8 7 6 32 32 H 1.07993 * 119.39557 * 180.02562 * 9 8 7 33 33 H 0.96996 * 119.99855 * 179.72869 * 12 11 10 34 34 H 1.09003 * 109.47987 * 303.64891 * 15 13 12 35 35 H 1.09000 * 109.48646 * 63.67507 * 15 13 12 36 36 H 1.08999 * 109.68894 * 185.51905 * 16 15 13 37 37 H 1.09007 * 109.78417 * 64.80859 * 16 15 13 38 38 H 0.97001 * 119.99646 * 180.02562 * 19 18 17 39 39 H 1.08997 * 109.62478 * 68.11642 * 24 17 16 40 40 H 1.08997 * 109.62834 * 188.69082 * 24 17 16 41 41 H 1.09007 * 109.47610 * 56.38891 * 25 13 12 42 42 H 1.08992 * 109.48652 * 296.34997 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2747 1.0497 0.0000 4 8 3.4424 0.7222 0.0053 5 6 3.5366 -0.6169 -0.0011 6 6 4.7785 -1.4132 -0.0018 7 6 4.7282 -2.8110 -0.0017 8 6 5.9216 -3.5122 -0.0019 9 6 7.1186 -2.8191 -0.0017 10 7 7.1445 -1.5004 -0.0066 11 6 6.0332 -0.7812 -0.0011 12 7 6.1078 0.6014 -0.0006 13 6 7.4141 1.2645 -0.0003 14 1 8.1176 0.6787 0.5912 15 6 7.9267 1.3752 -1.4372 16 6 9.3376 1.9840 -1.4282 17 6 9.2827 3.2995 -0.6835 18 6 9.7953 4.4507 -1.2432 19 7 9.7438 5.5844 -0.5786 20 14 10.5695 4.3985 -2.9425 21 1 9.5285 4.6595 -3.9689 22 1 11.6280 5.4358 -3.0361 23 1 11.1672 3.0589 -3.1732 24 6 8.6568 3.3186 0.6934 25 6 7.2756 2.6603 0.6097 26 7 2.2990 -1.0832 -0.0006 27 1 -0.3634 -0.0006 1.0276 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3633 -0.8896 -0.5144 30 1 3.7813 -3.3305 -0.0018 31 1 5.9182 -4.5922 -0.0014 32 1 8.0487 -3.3677 -0.0022 33 1 5.2951 1.1309 -0.0005 34 1 7.9630 0.3832 -1.8876 35 1 7.2565 2.0122 -2.0143 36 1 9.6697 2.1564 -2.4520 37 1 10.0283 1.3072 -0.9253 38 1 10.1041 6.3943 -0.9725 39 1 9.2856 2.7632 1.3891 40 1 8.5512 4.3488 1.0334 41 1 6.8504 2.5792 1.6102 42 1 6.6209 3.2671 -0.0156 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157055714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:23 Heat of formation + Delta-G solvation = 97.852080 kcal Electronic energy + Delta-G solvation = -25985.799431 eV Core-core repulsion = 22354.612692 eV Total energy + Delta-G solvation = -3631.186738 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.55708 -40.33060 -37.50746 -36.18350 -34.69325 -33.96174 -32.05448 -31.54108 -29.92008 -29.46876 -29.20909 -26.90046 -25.11849 -23.44954 -22.95279 -21.83261 -21.43972 -21.26501 -19.41337 -18.19622 -17.93864 -17.65887 -16.56124 -16.17255 -15.98605 -14.93242 -14.55025 -14.37952 -14.27587 -14.00712 -13.81287 -13.44765 -13.24157 -13.03894 -12.75727 -12.54370 -12.37356 -12.24516 -12.10399 -11.77938 -11.67517 -11.14794 -11.10188 -10.89903 -10.71373 -10.68433 -10.32547 -10.12107 -9.96267 -9.56922 -9.43773 -9.36483 -8.96535 -8.64926 -8.47094 -7.57576 -6.10678 -4.01302 0.36109 1.42359 1.55154 2.27129 2.54987 3.26491 3.35035 3.36447 3.38153 3.46159 3.83892 3.92621 4.38539 4.47762 4.66573 4.84693 5.03004 5.11576 5.13212 5.19680 5.22049 5.32353 5.50329 5.68624 5.75425 5.77019 5.86968 5.92493 6.08987 6.20720 6.36059 6.48546 6.60836 6.71454 6.85585 6.88048 7.00890 7.09139 7.34861 7.42560 7.49795 7.65393 7.71796 7.82260 8.02550 8.29212 8.37608 8.96030 9.54370 10.98912 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.015180 B = 0.003874 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.071199 B = 7226.221510 C = 8426.299498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.174 3.826 3 N -0.385 5.385 4 O 0.061 5.939 5 C 0.256 3.744 6 C -0.184 4.184 7 C 0.030 3.970 8 C -0.257 4.257 9 C 0.190 3.810 10 N -0.532 5.532 11 C 0.452 3.548 12 N -0.695 5.695 13 C 0.159 3.841 14 H 0.086 0.914 15 C -0.113 4.113 16 C -0.011 4.011 17 C -0.490 4.490 18 C 0.076 3.924 19 N -0.890 5.890 20 Si 0.888 3.112 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.266 1.266 24 C 0.015 3.985 25 C -0.118 4.118 26 N -0.491 5.491 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.162 0.838 33 H 0.405 0.595 34 H 0.038 0.962 35 H 0.049 0.951 36 H 0.030 0.970 37 H 0.021 0.979 38 H 0.264 0.736 39 H 0.007 0.993 40 H 0.061 0.939 41 H 0.035 0.965 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.943 -16.400 1.378 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.100 4.100 3 N -0.098 5.098 4 O 0.007 5.993 5 C 0.041 3.959 6 C -0.195 4.195 7 C 0.003 3.997 8 C -0.280 4.280 9 C 0.028 3.972 10 N -0.249 5.249 11 C 0.210 3.790 12 N -0.324 5.324 13 C 0.056 3.944 14 H 0.104 0.896 15 C -0.152 4.152 16 C -0.049 4.049 17 C -0.509 4.509 18 C -0.126 4.126 19 N -0.527 5.527 20 Si 0.716 3.284 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.191 1.191 24 C -0.023 4.023 25 C -0.156 4.156 26 N -0.226 5.226 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.179 0.821 33 H 0.245 0.755 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.040 0.960 38 H 0.074 0.926 39 H 0.025 0.975 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.594 -15.021 1.374 19.650 hybrid contribution -0.654 -0.156 -0.986 1.193 sum -13.247 -15.177 0.388 20.149 Atomic orbital electron populations 1.20125 0.82932 1.04612 1.04244 1.25794 1.00473 0.83620 1.00073 1.74637 0.88887 1.23670 1.22626 1.85196 1.22661 1.24351 1.67059 1.26097 0.94234 0.81349 0.94259 1.17473 0.85917 0.92741 1.23349 1.21318 0.99559 0.90534 0.88336 1.21711 0.92519 1.01363 1.12420 1.22811 0.98275 0.88776 0.87361 1.67520 1.27986 1.08037 1.21338 1.18480 0.87493 0.86412 0.86590 1.45747 1.11398 1.01326 1.73908 1.21195 0.81472 0.93575 0.98155 0.89561 1.22003 0.99939 0.98489 0.94736 1.19777 0.91830 0.96420 0.96877 1.20059 1.37800 0.91732 1.01288 1.24846 0.95339 0.94995 0.97468 1.69835 1.45623 0.99440 1.37842 0.86663 0.79381 0.77621 0.84723 1.20489 1.21659 1.19119 1.19321 0.89450 0.97693 0.95788 1.21977 1.02167 0.93956 0.97509 1.72108 0.98778 1.28675 1.23026 0.89348 0.89477 0.89104 0.83961 0.84362 0.82077 0.75475 0.94308 0.93265 0.95133 0.96047 0.92590 0.97468 0.92080 0.94605 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.51 36.00 0.38 -0.12 16 2 C 0.17 2.28 8.20 -156.57 -1.28 0.99 16 3 N -0.38 -5.85 12.15 31.22 0.38 -5.47 16 4 O 0.06 0.95 8.43 16.53 0.14 1.09 16 5 C 0.26 3.74 7.96 -13.91 -0.11 3.63 16 6 C -0.18 -2.53 5.91 -104.65 -0.62 -3.15 16 7 C 0.03 0.33 9.83 -38.90 -0.38 -0.06 16 8 C -0.26 -2.40 10.09 -39.49 -0.40 -2.80 16 9 C 0.19 2.09 11.16 -17.50 -0.20 1.89 16 10 N -0.53 -7.94 9.18 -12.18 -0.11 -8.06 16 11 C 0.45 7.01 7.47 -155.05 -1.16 5.86 16 12 N -0.70 -11.76 5.14 -53.76 -0.28 -12.04 16 13 C 0.16 3.06 2.35 -67.98 -0.16 2.90 16 14 H 0.09 1.73 7.54 -51.93 -0.39 1.34 16 15 C -0.11 -2.32 5.53 -26.41 -0.15 -2.47 16 16 C -0.01 -0.25 5.62 -27.26 -0.15 -0.41 16 17 C -0.49 -12.73 5.50 -98.92 -0.54 -13.27 16 18 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 19 N -0.89 -25.44 12.73 55.43 0.71 -24.73 16 20 Si 0.89 21.10 27.27 -169.99 -4.64 16.46 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.13 6.46 56.52 0.37 -5.77 16 24 C 0.02 0.38 5.97 -27.48 -0.16 0.21 16 25 C -0.12 -2.46 5.40 -26.63 -0.14 -2.60 16 26 N -0.49 -6.82 11.33 -10.18 -0.12 -6.94 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.14 1.33 7.95 -52.49 -0.42 0.91 16 31 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 32 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.41 6.70 5.29 -40.82 -0.22 6.48 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.03 0.71 4.78 -51.93 -0.25 0.46 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.06 1.64 7.07 -51.93 -0.37 1.27 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 344.21 15.07 5.19 5.19 Total: -1.00 -30.08 344.21 -9.37 -39.45 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.46 Total: 2.46 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -5.18 Total: -7.42 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.58 Total: -57.23 kcal Atomic # 8 Polarization: 0.95 SS G_CDS: 0.14 Total: 1.09 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.64 Total: 16.46 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.08 -9.37 -39.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.303 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds