Wall clock time and date at job start Tue Mar 31 2020 10:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30048 * 126.18008 * 2 1 4 4 O 1.21282 * 110.51573 * 179.73351 * 3 2 1 5 5 C 1.34245 * 109.68700 * 0.47056 * 4 3 2 6 6 C 1.47527 * 126.69297 * 179.80289 * 5 4 3 7 7 C 1.39874 * 120.60433 * 179.66140 * 6 5 4 8 8 C 1.38419 * 118.36786 * 180.02562 * 7 6 5 9 9 C 1.38308 * 119.49579 * 0.02562 * 8 7 6 10 10 N 1.31898 * 121.20042 * 359.72732 * 9 8 7 11 11 C 1.32373 * 121.77662 * 0.55767 * 10 9 8 12 12 N 1.38463 * 119.81946 * 179.71078 * 11 10 9 13 13 C 1.46493 * 120.00038 * 359.73729 * 12 11 10 14 14 H 1.08996 * 109.41676 * 324.85648 * 13 12 11 15 15 C 1.52959 * 109.35768 * 84.67960 * 13 12 11 16 16 C 1.53664 * 109.32566 * 183.79931 * 15 13 12 17 17 C 1.51265 * 108.30981 * 305.13871 * 16 15 13 18 18 C 1.37885 * 120.84832 * 231.38282 * 17 16 15 19 19 N 1.31516 * 119.99913 * 180.28091 * 18 17 16 20 20 Si 1.86805 * 119.99854 * 0.02562 * 18 17 16 21 21 H 1.48498 * 109.46909 * 90.00086 * 20 18 17 22 22 H 1.48497 * 109.46701 * 209.99996 * 20 18 17 23 23 H 1.48500 * 109.46867 * 330.00101 * 20 18 17 24 24 C 1.51267 * 118.30208 * 51.65598 * 17 16 15 25 25 C 1.52958 * 109.41560 * 204.99268 * 13 12 11 26 26 N 1.32255 * 106.61954 * 359.53646 * 5 4 3 27 27 H 1.08993 * 109.47735 * 269.96618 * 1 2 3 28 28 H 1.08999 * 109.46875 * 29.96542 * 1 2 3 29 29 H 1.08998 * 109.47242 * 149.96018 * 1 2 3 30 30 H 1.07998 * 120.81723 * 0.04337 * 7 6 5 31 31 H 1.08003 * 120.24894 * 179.97438 * 8 7 6 32 32 H 1.07993 * 119.39557 * 180.02562 * 9 8 7 33 33 H 0.96996 * 119.99855 * 179.72869 * 12 11 10 34 34 H 1.09003 * 109.47987 * 303.64891 * 15 13 12 35 35 H 1.09000 * 109.48646 * 63.67507 * 15 13 12 36 36 H 1.08999 * 109.68894 * 185.51905 * 16 15 13 37 37 H 1.09007 * 109.78417 * 64.80859 * 16 15 13 38 38 H 0.97001 * 119.99646 * 180.02562 * 19 18 17 39 39 H 1.08997 * 109.62478 * 68.11642 * 24 17 16 40 40 H 1.08997 * 109.62834 * 188.69082 * 24 17 16 41 41 H 1.09007 * 109.47610 * 56.38891 * 25 13 12 42 42 H 1.08992 * 109.48652 * 296.34997 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2747 1.0497 0.0000 4 8 3.4424 0.7222 0.0053 5 6 3.5366 -0.6169 -0.0011 6 6 4.7785 -1.4132 -0.0018 7 6 4.7282 -2.8110 -0.0017 8 6 5.9216 -3.5122 -0.0019 9 6 7.1186 -2.8191 -0.0017 10 7 7.1445 -1.5004 -0.0066 11 6 6.0332 -0.7812 -0.0011 12 7 6.1078 0.6014 -0.0006 13 6 7.4141 1.2645 -0.0003 14 1 8.1176 0.6787 0.5912 15 6 7.9267 1.3752 -1.4372 16 6 9.3376 1.9840 -1.4282 17 6 9.2827 3.2995 -0.6835 18 6 9.7953 4.4507 -1.2432 19 7 9.7438 5.5844 -0.5786 20 14 10.5695 4.3985 -2.9425 21 1 9.5285 4.6595 -3.9689 22 1 11.6280 5.4358 -3.0361 23 1 11.1672 3.0589 -3.1732 24 6 8.6568 3.3186 0.6934 25 6 7.2756 2.6603 0.6097 26 7 2.2990 -1.0832 -0.0006 27 1 -0.3634 -0.0006 1.0276 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3633 -0.8896 -0.5144 30 1 3.7813 -3.3305 -0.0018 31 1 5.9182 -4.5922 -0.0014 32 1 8.0487 -3.3677 -0.0022 33 1 5.2951 1.1309 -0.0005 34 1 7.9630 0.3832 -1.8876 35 1 7.2565 2.0122 -2.0143 36 1 9.6697 2.1564 -2.4520 37 1 10.0283 1.3072 -0.9253 38 1 10.1041 6.3943 -0.9725 39 1 9.2856 2.7632 1.3891 40 1 8.5512 4.3488 1.0334 41 1 6.8504 2.5792 1.6102 42 1 6.6209 3.2671 -0.0156 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157055714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:22 Heat of formation + Delta-G solvation = 79.173955 kcal Electronic energy + Delta-G solvation = -25986.609375 eV Core-core repulsion = 22354.612692 eV Total energy + Delta-G solvation = -3631.996683 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.59919 -41.35832 -39.04969 -37.21500 -36.09804 -35.05293 -33.74988 -32.57941 -31.56363 -30.85019 -30.08563 -28.51546 -26.10566 -24.67059 -24.13114 -23.41307 -22.88074 -22.53547 -21.08840 -19.26235 -18.95064 -18.80251 -17.98316 -17.48459 -17.21573 -16.40291 -15.98737 -15.60023 -15.52956 -15.01160 -14.88452 -14.53307 -14.51268 -14.29576 -14.18214 -13.96410 -13.82744 -13.46249 -13.29258 -13.13447 -12.85885 -12.76686 -12.69647 -12.52677 -12.14067 -11.91482 -11.87371 -11.65621 -11.62841 -11.22223 -10.86884 -10.58644 -10.54963 -10.41481 -10.34417 -8.71888 -8.16929 -6.10724 -0.63869 0.49627 0.56483 1.27232 1.38142 1.41381 1.50279 1.51691 2.16544 2.41140 2.50453 2.89211 3.01428 3.12027 3.53995 3.72387 3.99449 4.04291 4.12029 4.20277 4.28705 4.45932 4.52310 4.56767 4.59469 4.69916 4.70247 4.80639 4.90922 4.96137 5.01838 5.06454 5.08180 5.16228 5.25206 5.25843 5.26929 5.57476 5.60326 5.66321 5.75174 5.80629 6.10812 6.29557 6.35450 6.95037 6.99645 7.22357 7.47217 8.94069 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.015180 B = 0.003874 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.071199 B = 7226.221510 C = 8426.299498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.176 3.824 3 N -0.414 5.414 4 O 0.040 5.960 5 C 0.250 3.750 6 C -0.192 4.192 7 C 0.028 3.972 8 C -0.229 4.229 9 C 0.183 3.817 10 N -0.562 5.562 11 C 0.433 3.567 12 N -0.707 5.707 13 C 0.178 3.822 14 H 0.080 0.920 15 C -0.103 4.103 16 C -0.011 4.011 17 C -0.499 4.499 18 C 0.022 3.978 19 N -0.931 5.931 20 Si 0.940 3.060 21 H -0.277 1.277 22 H -0.292 1.292 23 H -0.251 1.251 24 C 0.013 3.987 25 C -0.107 4.107 26 N -0.495 5.495 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.161 0.839 31 H 0.181 0.819 32 H 0.195 0.805 33 H 0.405 0.595 34 H 0.052 0.948 35 H 0.037 0.963 36 H 0.031 0.969 37 H 0.026 0.974 38 H 0.262 0.738 39 H 0.005 0.995 40 H 0.029 0.971 41 H 0.050 0.950 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.988 -20.077 0.738 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.097 4.097 3 N -0.131 5.131 4 O -0.010 6.010 5 C 0.035 3.965 6 C -0.203 4.203 7 C 0.001 3.999 8 C -0.251 4.251 9 C 0.022 3.978 10 N -0.280 5.280 11 C 0.194 3.806 12 N -0.338 5.338 13 C 0.074 3.926 14 H 0.098 0.902 15 C -0.142 4.142 16 C -0.049 4.049 17 C -0.518 4.518 18 C -0.176 4.176 19 N -0.571 5.571 20 Si 0.766 3.234 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.175 1.175 24 C -0.025 4.025 25 C -0.146 4.146 26 N -0.230 5.230 27 H 0.124 0.876 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.179 0.821 31 H 0.199 0.801 32 H 0.212 0.788 33 H 0.244 0.756 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.024 0.976 40 H 0.047 0.953 41 H 0.068 0.932 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.623 -18.775 0.732 23.209 hybrid contribution -0.386 0.784 -0.708 1.125 sum -14.009 -17.991 0.024 22.802 Atomic orbital electron populations 1.20397 0.79712 1.05993 1.05792 1.26680 1.02229 0.82874 0.97944 1.74639 0.89052 1.24840 1.24600 1.85163 1.23054 1.24933 1.67809 1.26427 0.94932 0.81228 0.93934 1.17652 0.84943 0.93863 1.23883 1.21662 1.01221 0.89309 0.87675 1.22173 0.91017 1.03280 1.08665 1.23482 1.00486 0.87631 0.86153 1.67504 1.28163 1.10037 1.22259 1.18577 0.88503 0.85700 0.87849 1.45390 1.09947 1.02250 1.76164 1.20697 0.82814 0.92328 0.96788 0.90189 1.21858 0.98009 0.98608 0.95744 1.19775 0.93578 0.95152 0.96421 1.20651 1.36455 0.92888 1.01825 1.25607 0.96305 0.94893 1.00824 1.69972 1.47552 1.00082 1.39527 0.85814 0.78576 0.78118 0.80846 1.20290 1.21823 1.17549 1.19259 0.91595 0.96213 0.95425 1.21759 0.99555 0.94842 0.98405 1.72126 0.98563 1.28905 1.23434 0.87552 0.88469 0.87302 0.82106 0.80126 0.78801 0.75555 0.92920 0.94384 0.95077 0.95585 0.92841 0.97618 0.95255 0.93152 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.51 71.23 0.75 -0.12 16 2 C 0.18 4.42 8.20 138.53 1.14 5.55 16 3 N -0.41 -12.59 12.15 -58.46 -0.71 -13.30 16 4 O 0.04 1.25 8.43 69.23 0.58 1.84 16 5 C 0.25 7.15 7.96 87.19 0.69 7.85 16 6 C -0.19 -5.03 5.91 -19.88 -0.12 -5.15 16 7 C 0.03 0.53 9.83 22.71 0.22 0.75 16 8 C -0.23 -3.23 10.09 22.33 0.23 -3.01 16 9 C 0.18 3.35 11.16 84.70 0.95 4.29 16 10 N -0.56 -15.70 9.18 -192.45 -1.77 -17.47 16 11 C 0.43 13.02 7.47 133.59 1.00 14.02 16 12 N -0.71 -23.98 5.14 -323.99 -1.66 -25.64 16 13 C 0.18 6.87 2.35 44.97 0.11 6.98 16 14 H 0.08 3.20 7.54 -2.39 -0.02 3.18 16 15 C -0.10 -4.21 5.53 30.80 0.17 -4.04 16 16 C -0.01 -0.51 5.62 30.25 0.17 -0.34 16 17 C -0.50 -26.41 5.50 -16.17 -0.09 -26.50 16 18 C 0.02 1.21 5.46 84.66 0.46 1.67 16 19 N -0.93 -55.23 12.73 21.45 0.27 -54.96 16 20 Si 0.94 43.70 27.27 68.60 1.87 45.57 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 23 H -0.25 -10.97 6.46 99.48 0.64 -10.32 16 24 C 0.01 0.66 5.97 30.11 0.18 0.84 16 25 C -0.11 -4.59 5.40 30.66 0.17 -4.43 16 26 N -0.50 -13.08 11.33 -302.64 -3.43 -16.51 16 27 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.16 2.40 7.95 -2.91 -0.02 2.38 16 31 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 32 H 0.20 2.13 8.06 -2.91 -0.02 2.10 16 33 H 0.40 13.71 5.29 -92.71 -0.49 13.22 16 34 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.03 1.40 4.78 -2.39 -0.01 1.39 16 37 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 39 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.03 1.64 7.07 -2.39 -0.02 1.62 16 41 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -67.61 344.21 1.68 -65.93 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.50 Total: 16.15 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 6.02 Total: -1.62 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -7.30 Total: -127.88 kcal Atomic # 8 Polarization: 1.25 SS G_CDS: 0.58 Total: 1.84 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.87 Total: 45.57 kcal Total: -67.61 1.68 -65.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.107 kcal (2) G-P(sol) polarization free energy of solvation -67.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds