Wall clock time and date at job start Tue Mar 31 2020 11:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47319 * 293.53733 * 3 2 1 5 5 N 1.46501 * 109.47225 * 180.02562 * 4 3 2 6 6 C 1.45754 * 117.94774 * 270.02359 * 5 4 3 7 7 C 1.52917 * 110.48714 * 160.92219 * 6 5 4 8 8 C 1.53344 * 108.67300 * 50.75576 * 7 6 5 9 9 C 1.53262 * 108.26106 * 292.28012 * 8 7 6 10 10 H 1.08997 * 109.59814 * 289.08844 * 9 8 7 11 11 N 1.46498 * 109.29408 * 169.29000 * 9 8 7 12 12 C 1.38833 * 119.99758 * 154.75591 * 11 9 8 13 13 C 1.39959 * 119.96530 * 359.97438 * 12 11 9 14 14 N 1.32130 * 120.31515 * 180.02562 * 13 12 11 15 15 C 1.31930 * 120.27005 * 359.97438 * 14 13 12 16 16 C 1.40686 * 119.93603 * 359.97438 * 15 14 13 17 17 C 1.41273 * 120.15612 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99979 * 353.80376 * 17 16 15 19 19 C 1.40052 * 119.99610 * 173.81187 * 17 16 15 20 20 N 1.30730 * 120.00586 * 6.31493 * 19 17 16 21 21 Si 1.86804 * 119.99709 * 186.31805 * 19 17 16 22 22 H 1.48496 * 109.47275 * 94.98291 * 21 19 17 23 23 H 1.48499 * 109.46978 * 214.98466 * 21 19 17 24 24 H 1.48503 * 109.47154 * 334.98195 * 21 19 17 25 25 N 1.32235 * 119.96568 * 179.72419 * 12 11 9 26 26 C 1.33356 * 117.94622 * 89.99957 * 5 4 3 27 27 O 1.21284 * 118.24253 * 2.22610 * 26 5 4 28 28 H 4.44649 * 5.63467 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.46727 * 173.53794 * 3 2 1 30 30 H 1.09003 * 109.47086 * 53.53677 * 3 2 1 31 31 H 1.09000 * 109.47171 * 60.00333 * 4 3 2 32 32 H 1.09003 * 109.46996 * 299.99999 * 4 3 2 33 33 H 1.09002 * 109.29852 * 281.23507 * 6 5 4 34 34 H 1.09002 * 109.30141 * 40.61003 * 6 5 4 35 35 H 1.09004 * 109.59950 * 170.50555 * 7 6 5 36 36 H 1.08997 * 109.60785 * 290.83187 * 7 6 5 37 37 H 1.08995 * 109.67516 * 52.20096 * 8 7 6 38 38 H 1.09003 * 109.67489 * 172.73439 * 8 7 6 39 39 H 0.97003 * 120.00447 * 334.75078 * 11 9 8 40 40 H 1.07997 * 119.84759 * 359.97438 * 13 12 11 41 41 H 1.08003 * 120.03255 * 179.97438 * 15 14 13 42 42 H 0.96992 * 120.00447 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.5752 1.3224 5 7 4.6213 -0.5739 1.3227 6 6 5.3055 -1.7535 0.8079 7 6 6.7520 -1.4169 0.4437 8 6 7.4056 -0.7061 1.6349 9 6 6.7387 0.6637 1.8018 10 1 7.0387 1.3184 0.9836 11 7 7.1588 1.2547 3.0747 12 6 7.1453 2.6333 3.2379 13 6 6.7309 3.4578 2.1856 14 7 6.7159 4.7708 2.3331 15 6 7.0911 5.3161 3.4743 16 6 7.5087 4.4976 4.5397 17 6 7.9120 5.0766 5.7636 18 1 7.9962 6.1497 5.8515 19 6 8.2027 4.2589 6.8629 20 7 8.2213 2.9591 6.7241 21 14 8.5638 5.0256 8.5276 22 1 7.3183 5.0645 9.3354 23 1 9.5872 4.2145 9.2346 24 1 9.0729 6.4075 8.3362 25 7 7.5194 3.1659 4.3890 26 6 5.2453 0.5066 1.7934 27 8 4.5703 1.4129 2.2337 28 1 -1.0499 -0.0003 0.0002 29 1 3.0088 1.0220 -0.1157 30 1 3.0096 -0.6099 -0.8265 31 1 2.7935 -1.5965 1.4381 32 1 2.7927 0.0354 2.1490 33 1 5.2978 -2.5348 1.5680 34 1 4.7849 -2.1134 -0.0795 35 1 7.2963 -2.3349 0.2220 36 1 6.7669 -0.7632 -0.4284 37 1 7.2655 -1.2997 2.5383 38 1 8.4705 -0.5735 1.4439 39 1 7.4462 0.6828 3.8036 40 1 6.4227 3.0189 1.2482 41 1 7.0777 6.3897 3.5906 42 1 8.4222 2.3929 7.4854 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160900143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:56 Heat of formation + Delta-G solvation = 47.868727 kcal Electronic energy + Delta-G solvation = -25800.571462 eV Core-core repulsion = 22167.217283 eV Total energy + Delta-G solvation = -3633.354179 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.82765 -40.63964 -37.57579 -37.51564 -35.88144 -35.52289 -33.97792 -33.11299 -31.28334 -30.43381 -29.09432 -27.78511 -25.88744 -24.70774 -24.31459 -22.90162 -22.75773 -19.89343 -19.41760 -19.06691 -18.31138 -17.81305 -17.58563 -17.37477 -16.82968 -16.57695 -16.30456 -15.69548 -15.37582 -15.22371 -15.04449 -14.93025 -14.62643 -14.31989 -14.08492 -13.73866 -13.39864 -13.27453 -13.07257 -12.83923 -12.73203 -12.53630 -12.30093 -12.19146 -11.99579 -11.93581 -11.79132 -11.54225 -11.37706 -11.37342 -11.07387 -10.75624 -10.21857 -9.70432 -9.33565 -8.53350 -8.33340 -6.62426 0.83649 1.23745 1.41251 1.50955 1.55834 1.57221 1.72607 1.86513 2.07390 2.21335 2.52613 2.84315 3.48562 3.59087 3.67734 3.81627 3.93380 4.02289 4.08167 4.09508 4.18406 4.33601 4.41852 4.44772 4.55235 4.63555 4.67920 4.81472 4.83679 4.91243 4.96112 5.08706 5.10335 5.12279 5.15640 5.21370 5.33760 5.50631 5.68894 6.08129 6.15636 6.42147 6.63574 6.65207 6.66411 6.95592 7.21302 7.46062 8.06237 8.36183 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.016348 B = 0.003396 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.353864 B = 8243.904342 C = 8758.899215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.222 4.222 3 C -0.019 4.019 4 C 0.117 3.883 5 N -0.598 5.598 6 C 0.102 3.898 7 C -0.123 4.123 8 C -0.120 4.120 9 C 0.151 3.849 10 H 0.103 0.897 11 N -0.704 5.704 12 C 0.376 3.624 13 C -0.151 4.151 14 N -0.423 5.423 15 C -0.137 4.137 16 C 0.214 3.786 17 C -0.444 4.444 18 H 0.100 0.900 19 C 0.022 3.978 20 N -0.744 5.744 21 Si 0.996 3.004 22 H -0.267 1.267 23 H -0.264 1.264 24 H -0.250 1.250 25 N -0.536 5.536 26 C 0.488 3.512 27 O -0.580 6.580 28 H 0.248 0.752 29 H 0.061 0.939 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.127 0.873 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.400 0.600 40 H 0.130 0.870 41 H 0.142 0.858 42 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.366 -17.331 -10.776 20.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.222 4.222 3 C -0.056 4.056 4 C -0.007 4.007 5 N -0.331 5.331 6 C -0.019 4.019 7 C -0.161 4.161 8 C -0.158 4.158 9 C 0.042 3.958 10 H 0.121 0.879 11 N -0.340 5.340 12 C 0.132 3.868 13 C -0.314 4.314 14 N -0.135 5.135 15 C -0.304 4.304 16 C 0.087 3.913 17 C -0.476 4.476 18 H 0.118 0.882 19 C -0.201 4.201 20 N -0.365 5.365 21 Si 0.815 3.185 22 H -0.192 1.192 23 H -0.188 1.188 24 H -0.174 1.174 25 N -0.264 5.264 26 C 0.274 3.726 27 O -0.458 6.458 28 H 0.264 0.736 29 H 0.080 0.920 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.125 0.875 35 H 0.145 0.855 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.236 0.764 40 H 0.147 0.853 41 H 0.159 0.841 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.689 -17.097 -10.663 20.688 hybrid contribution -0.277 0.566 1.016 1.196 sum -4.966 -16.531 -9.647 19.774 Atomic orbital electron populations 1.25733 0.96850 0.99709 0.99150 1.23323 0.95085 1.01775 1.02040 1.18943 0.84971 1.02200 0.99502 1.21348 0.79961 1.02696 0.96675 1.47554 1.06612 1.17046 1.61858 1.21855 0.93598 0.85600 1.00820 1.21897 0.94059 1.03221 0.96927 1.22003 1.01399 0.91392 1.01029 1.20979 0.89089 0.98204 0.87567 0.87903 1.43946 1.72586 1.01789 1.15638 1.19668 0.89357 0.86645 0.91177 1.22060 1.19545 0.89619 1.00151 1.67469 1.08916 1.12772 1.24294 1.23058 1.15307 0.99872 0.92202 1.19541 0.89689 0.87872 0.94215 1.20032 1.37966 0.95648 0.93946 0.88151 1.27124 0.92952 0.95043 1.04985 1.70193 1.27667 1.05864 1.32785 0.84998 0.78808 0.79617 0.75082 1.19176 1.18849 1.17358 1.69015 1.25436 1.12433 1.19482 1.21447 0.92224 0.81899 0.77027 1.90783 1.66890 1.41000 1.47147 0.73607 0.92013 0.86695 0.87161 0.93178 0.89966 0.87459 0.85512 0.90202 0.90082 0.88684 0.76379 0.85257 0.84104 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.84 19.25 74.32 1.43 -2.41 16 2 C -0.22 -5.09 13.34 31.13 0.42 -4.67 16 3 C -0.02 -0.40 6.02 28.79 0.17 -0.23 16 4 C 0.12 2.64 5.17 86.38 0.45 3.09 16 5 N -0.60 -13.42 2.81 -826.64 -2.32 -15.74 16 6 C 0.10 1.14 6.32 86.49 0.55 1.68 16 7 C -0.12 -1.21 6.01 30.68 0.18 -1.03 16 8 C -0.12 -2.13 5.51 30.80 0.17 -1.96 16 9 C 0.15 4.59 2.44 44.17 0.11 4.70 16 10 H 0.10 3.23 6.43 -2.39 -0.02 3.21 16 11 N -0.70 -28.97 5.11 -328.04 -1.68 -30.64 16 12 C 0.38 19.89 7.23 133.37 0.96 20.86 16 13 C -0.15 -8.07 9.48 85.07 0.81 -7.26 16 14 N -0.42 -24.01 10.47 -192.23 -2.01 -26.03 16 15 C -0.14 -7.82 10.97 85.28 0.94 -6.89 16 16 C 0.21 12.82 6.54 40.15 0.26 13.09 16 17 C -0.44 -24.72 9.15 23.46 0.21 -24.50 16 18 H 0.10 5.14 7.86 -2.91 -0.02 5.12 16 19 C 0.02 1.14 5.49 85.30 0.47 1.60 16 20 N -0.74 -40.05 11.51 21.84 0.25 -39.80 16 21 Si 1.00 38.04 29.56 68.60 2.03 40.07 16 22 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 23 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 24 H -0.25 -9.11 7.11 99.48 0.71 -8.41 16 25 N -0.54 -31.71 8.10 -185.99 -1.51 -33.22 16 26 C 0.49 16.13 7.12 87.71 0.62 16.75 16 27 O -0.58 -26.62 14.40 -3.04 -0.04 -26.66 16 28 H 0.25 2.75 7.80 -4.42 -0.03 2.71 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.11 1.75 8.02 -2.39 -0.02 1.73 16 32 H 0.05 1.57 7.13 -2.39 -0.02 1.55 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.11 0.60 8.10 -2.39 -0.02 0.58 16 35 H 0.13 0.43 8.14 -2.38 -0.02 0.41 16 36 H 0.08 0.80 8.12 -2.39 -0.02 0.78 16 37 H 0.08 1.40 8.11 -2.39 -0.02 1.38 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.40 16.00 8.71 -92.71 -0.81 15.19 16 40 H 0.13 6.34 6.01 -2.91 -0.02 6.32 16 41 H 0.14 7.37 8.06 -2.91 -0.02 7.35 16 42 H 0.28 13.55 8.29 -92.71 -0.77 12.78 16 Total: -1.00 -83.68 356.68 2.71 -80.97 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: 0.24 Total: 38.23 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 7.75 Total: 12.82 kcal Atomic # 7 Polarization: -138.16 SS G_CDS: -7.27 Total: -145.43 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.04 Total: -26.66 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -83.68 2.71 -80.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160900143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.839 kcal (2) G-P(sol) polarization free energy of solvation -83.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds