Wall clock time and date at job start Tue Mar 31 2020 10:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35925 * 116.99635 * 2 1 4 4 C 1.39400 * 119.83271 * 359.97438 * 3 2 1 5 5 C 1.38108 * 120.56061 * 180.02562 * 4 3 2 6 6 C 1.38653 * 120.21365 * 0.02562 * 5 4 3 7 7 N 1.39226 * 120.17187 * 180.02562 * 6 5 4 8 8 C 1.35910 * 120.34466 * 89.99844 * 7 6 5 9 9 C 1.50698 * 119.30691 * 359.97438 * 8 7 6 10 10 N 1.30407 * 121.38017 * 179.70639 * 8 7 6 11 11 C 1.33746 * 122.06250 * 0.27242 * 10 8 7 12 12 C 1.35676 * 120.47744 * 0.02562 * 11 10 8 13 13 C 1.50702 * 120.68533 * 180.02562 * 12 11 10 14 14 N 1.46907 * 109.46871 * 260.00380 * 13 12 11 15 15 C 1.38293 * 120.34151 * 270.24883 * 7 6 5 16 16 N 1.31457 * 120.93024 * 0.02562 * 15 7 6 17 17 C 1.41475 * 119.65575 * 0.27442 * 6 5 4 18 18 C 1.41038 * 120.27151 * 179.70436 * 17 6 5 19 19 H 1.08006 * 120.00013 * 24.63109 * 18 17 6 20 20 C 1.39949 * 120.00117 * 204.63463 * 18 17 6 21 21 N 1.30846 * 120.00181 * 17.55121 * 20 18 17 22 22 Si 1.86797 * 120.00054 * 197.55050 * 20 18 17 23 23 H 1.48507 * 109.47123 * 89.99884 * 22 20 18 24 24 H 1.48496 * 109.47657 * 209.99769 * 22 20 18 25 25 H 1.48496 * 109.47449 * 330.00252 * 22 20 18 26 26 C 1.37898 * 119.82686 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47106 * 299.99636 * 1 2 3 28 28 H 1.08998 * 109.47291 * 60.00091 * 1 2 3 29 29 H 1.08998 * 109.46748 * 180.02562 * 1 2 3 30 30 H 1.07993 * 119.72234 * 0.04628 * 4 3 2 31 31 H 1.07999 * 119.89684 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.47512 * 269.73174 * 9 8 7 33 33 H 1.08997 * 109.47299 * 29.73169 * 9 8 7 34 34 H 1.09003 * 109.47051 * 149.73001 * 9 8 7 35 35 H 1.08003 * 119.75651 * 179.97438 * 11 10 8 36 36 H 1.09007 * 109.47217 * 19.99712 * 13 12 11 37 37 H 1.08996 * 109.47437 * 139.99918 * 13 12 11 38 38 H 1.00895 * 111.00225 * 56.04246 * 14 13 12 39 39 H 1.00893 * 110.99922 * 180.02562 * 14 13 12 40 40 H 0.97002 * 119.99948 * 180.27255 * 16 15 7 41 41 H 0.96995 * 120.00413 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.11399 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2833 2.3780 -0.0005 5 6 1.8946 3.6164 -0.0011 6 6 3.2778 3.7118 -0.0016 7 7 3.8931 4.9608 -0.0016 8 6 4.1969 5.5765 1.1713 9 6 3.8604 4.8935 2.4718 10 7 4.7783 6.7436 1.1948 11 6 5.1013 7.3986 0.0744 12 6 4.8288 6.8598 -1.1406 13 6 5.1912 7.5935 -2.4061 14 7 3.9980 8.2605 -2.9442 15 6 4.1967 5.5899 -1.1951 16 7 3.9120 5.0258 -2.3479 17 6 4.0607 2.5335 -0.0075 18 6 5.4687 2.6154 -0.0144 19 1 5.9604 3.4949 0.3744 20 6 6.2287 1.5571 -0.5252 21 7 5.6676 0.6608 -1.2959 22 14 8.0444 1.4240 -0.1068 23 1 8.2096 0.6185 1.1299 24 1 8.7635 0.7649 -1.2264 25 1 8.6036 2.7826 0.1091 26 6 3.4233 1.2792 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2053 2.3130 -0.0002 31 1 1.2932 4.5135 -0.0011 32 1 2.8595 5.1870 2.7880 33 1 3.8957 3.8128 2.3344 34 1 4.5828 5.1866 3.2336 35 1 5.5817 8.3638 0.1374 36 1 5.9564 8.3385 -2.1877 37 1 5.5735 6.8845 -3.1404 38 1 3.5871 8.8755 -2.2580 39 1 4.2150 8.7595 -3.7938 40 1 4.1346 5.4775 -3.1770 41 1 6.1944 -0.0725 -1.6502 42 1 4.0107 0.3729 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167676226.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:56 Heat of formation + Delta-G solvation = 54.360659 kcal Electronic energy + Delta-G solvation = -26715.841284 eV Core-core repulsion = 23082.768616 eV Total energy + Delta-G solvation = -3633.072668 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.70689 -38.73124 -36.85222 -35.59835 -34.42680 -33.55531 -32.57112 -30.10247 -29.87914 -28.52499 -28.13886 -26.39782 -25.33512 -24.16781 -22.93634 -21.38012 -21.15973 -20.08992 -17.83612 -17.58527 -16.69079 -16.23401 -15.85896 -15.75235 -15.58293 -14.89736 -14.83810 -14.53743 -14.20586 -14.04724 -13.33876 -13.10075 -12.93875 -12.58611 -12.46552 -12.17388 -12.11498 -12.07628 -11.80377 -11.47962 -11.40582 -11.26291 -11.23906 -10.70321 -10.66581 -10.24366 -10.03394 -9.87779 -9.37635 -9.24891 -9.15695 -8.66834 -8.35369 -7.63963 -7.07658 -6.86512 -6.77691 -4.56879 1.34949 2.60634 2.74871 2.75366 3.00386 3.03934 3.11907 3.38698 3.82613 4.23426 4.24580 4.46212 4.58775 4.82083 5.04352 5.19402 5.38465 5.40497 5.61033 5.62870 5.70572 5.77440 5.85764 5.88636 5.90571 5.99473 6.20532 6.25994 6.37036 6.50608 6.66871 6.81463 6.89640 7.07592 7.12672 7.21368 7.27425 7.44485 7.50532 7.54990 7.77771 7.85989 8.05245 8.26170 8.57218 8.60585 8.66511 8.79278 9.29178 10.01444 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.010218 B = 0.006258 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.680817 B = 4473.117029 C = 5770.020357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.328 6.328 3 C 0.143 3.857 4 C -0.312 4.312 5 C -0.026 4.026 6 C -0.042 4.042 7 N -0.406 5.406 8 C 0.424 3.576 9 C -0.105 4.105 10 N -0.587 5.587 11 C 0.143 3.857 12 C -0.264 4.264 13 C 0.126 3.874 14 N -0.844 5.844 15 C 0.425 3.575 16 N -0.736 5.736 17 C 0.162 3.838 18 C -0.439 4.439 19 H 0.075 0.925 20 C 0.080 3.920 21 N -0.765 5.765 22 Si 0.907 3.093 23 H -0.263 1.263 24 H -0.275 1.275 25 H -0.262 1.262 26 C -0.191 4.191 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.142 0.858 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.340 0.660 39 H 0.338 0.662 40 H 0.339 0.661 41 H 0.285 0.715 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.143 7.147 3.373 8.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.242 6.242 3 C 0.099 3.901 4 C -0.332 4.332 5 C -0.046 4.046 6 C -0.133 4.133 7 N -0.100 5.100 8 C 0.161 3.839 9 C -0.164 4.164 10 N -0.313 5.313 11 C 0.002 3.998 12 C -0.276 4.276 13 C -0.005 4.005 14 N -0.374 5.374 15 C 0.150 3.850 16 N -0.365 5.365 17 C 0.158 3.842 18 C -0.467 4.467 19 H 0.093 0.907 20 C -0.142 4.142 21 N -0.388 5.388 22 Si 0.730 3.270 23 H -0.188 1.188 24 H -0.200 1.200 25 H -0.186 1.186 26 C -0.211 4.211 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.160 0.840 36 H 0.053 0.947 37 H 0.093 0.907 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.096 0.904 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.574 5.430 3.434 6.921 hybrid contribution 1.431 1.645 -1.130 2.456 sum -1.143 7.075 2.304 7.528 Atomic orbital electron populations 1.22781 0.80585 1.01987 1.00626 1.86023 1.19656 1.28895 1.89619 1.18955 0.92377 0.82529 0.96280 1.20229 0.97491 0.91840 1.23649 1.20176 0.92419 0.95763 0.96221 1.17123 0.90256 0.82130 1.23839 1.41738 1.48823 1.16306 1.03107 1.23396 0.84919 0.87475 0.88074 1.20893 1.02973 1.01889 0.90606 1.68061 1.24303 1.08956 1.29970 1.21950 0.92828 0.97506 0.87496 1.21099 1.12162 0.98184 0.96154 1.20236 0.90626 0.96156 0.93492 1.58681 1.30650 1.38745 1.09359 1.18489 0.91676 0.86961 0.87830 1.69637 1.30633 1.38046 0.98183 1.17105 0.92686 0.88565 0.85860 1.19351 0.90893 1.01930 1.34527 0.90691 1.25928 1.01373 0.94410 0.92491 1.69848 1.38769 1.10216 1.19980 0.86319 0.81573 0.79780 0.79283 1.18806 1.20041 1.18584 1.20420 0.89410 0.98656 1.12631 0.93597 0.93534 0.89840 0.88137 0.89067 0.89322 0.88336 0.88948 0.84045 0.94732 0.90747 0.84807 0.84968 0.84470 0.90403 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 9.81 101.05 0.99 1.55 16 2 O -0.33 -6.95 10.49 -19.50 -0.20 -7.15 16 3 C 0.14 3.32 6.67 -39.27 -0.26 3.06 16 4 C -0.31 -6.73 9.03 -39.20 -0.35 -7.08 16 5 C -0.03 -0.58 9.94 -39.48 -0.39 -0.97 16 6 C -0.04 -0.98 3.02 -83.12 -0.25 -1.23 16 7 N -0.41 -8.79 1.92 -56.51 -0.11 -8.89 16 8 C 0.42 8.06 7.39 -154.70 -1.14 6.92 16 9 C -0.11 -1.64 9.70 36.00 0.35 -1.29 16 10 N -0.59 -10.60 10.25 -10.49 -0.11 -10.71 16 11 C 0.14 2.38 10.80 -17.63 -0.19 2.19 16 12 C -0.26 -4.73 5.44 -104.12 -0.57 -5.30 16 13 C 0.13 1.82 6.29 -4.97 -0.03 1.78 16 14 N -0.84 -10.80 9.61 -11.40 -0.11 -10.91 16 15 C 0.42 9.28 7.51 -155.42 -1.17 8.11 16 16 N -0.74 -17.35 13.39 31.43 0.42 -16.93 16 17 C 0.16 4.10 5.12 -106.68 -0.55 3.55 16 18 C -0.44 -11.20 8.68 -37.88 -0.33 -11.52 16 19 H 0.07 1.92 7.39 -52.48 -0.39 1.53 16 20 C 0.08 1.96 5.14 -17.33 -0.09 1.87 16 21 N -0.77 -19.54 10.96 55.55 0.61 -18.93 16 22 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 23 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 26 C -0.19 -4.85 8.61 -38.78 -0.33 -5.18 16 27 H 0.05 0.65 7.65 -51.93 -0.40 0.25 16 28 H 0.05 0.70 7.65 -51.93 -0.40 0.30 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.10 1.90 6.26 -52.49 -0.33 1.57 16 31 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.10 1.71 6.60 -51.93 -0.34 1.36 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.14 1.86 8.03 -52.48 -0.42 1.44 16 36 H 0.03 0.42 8.01 -51.92 -0.42 0.00 16 37 H 0.07 1.15 7.23 -51.93 -0.38 0.78 16 38 H 0.34 4.01 8.98 -39.29 -0.35 3.65 16 39 H 0.34 3.40 9.08 -39.30 -0.36 3.05 16 40 H 0.34 7.34 7.12 -40.82 -0.29 7.05 16 41 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 42 H 0.13 3.47 6.18 -52.49 -0.32 3.14 16 LS Contribution 351.64 15.07 5.30 5.30 Total: -1.00 -30.38 351.64 -8.76 -39.14 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -5.22 Total: 19.11 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -4.32 Total: -3.55 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: 0.70 Total: -66.36 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.20 Total: -7.15 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.38 -8.76 -39.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167676226.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.505 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds