Wall clock time and date at job start Tue Mar 31 2020 10:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35925 * 116.99635 * 2 1 4 4 C 1.39400 * 119.83271 * 359.97438 * 3 2 1 5 5 C 1.38108 * 120.56061 * 180.02562 * 4 3 2 6 6 C 1.38653 * 120.21365 * 0.02562 * 5 4 3 7 7 N 1.39226 * 120.17187 * 180.02562 * 6 5 4 8 8 C 1.35910 * 120.34466 * 89.99844 * 7 6 5 9 9 C 1.50698 * 119.30691 * 359.97438 * 8 7 6 10 10 N 1.30407 * 121.38017 * 179.70639 * 8 7 6 11 11 C 1.33746 * 122.06250 * 0.27242 * 10 8 7 12 12 C 1.35676 * 120.47744 * 0.02562 * 11 10 8 13 13 C 1.50702 * 120.68533 * 180.02562 * 12 11 10 14 14 N 1.46907 * 109.46871 * 260.00380 * 13 12 11 15 15 C 1.38293 * 120.34151 * 270.24883 * 7 6 5 16 16 N 1.31457 * 120.93024 * 0.02562 * 15 7 6 17 17 C 1.41475 * 119.65575 * 0.27442 * 6 5 4 18 18 C 1.41038 * 120.27151 * 179.70436 * 17 6 5 19 19 H 1.08006 * 120.00013 * 24.63109 * 18 17 6 20 20 C 1.39949 * 120.00117 * 204.63463 * 18 17 6 21 21 N 1.30846 * 120.00181 * 17.55121 * 20 18 17 22 22 Si 1.86797 * 120.00054 * 197.55050 * 20 18 17 23 23 H 1.48507 * 109.47123 * 89.99884 * 22 20 18 24 24 H 1.48496 * 109.47657 * 209.99769 * 22 20 18 25 25 H 1.48496 * 109.47449 * 330.00252 * 22 20 18 26 26 C 1.37898 * 119.82686 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47106 * 299.99636 * 1 2 3 28 28 H 1.08998 * 109.47291 * 60.00091 * 1 2 3 29 29 H 1.08998 * 109.46748 * 180.02562 * 1 2 3 30 30 H 1.07993 * 119.72234 * 0.04628 * 4 3 2 31 31 H 1.07999 * 119.89684 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.47512 * 269.73174 * 9 8 7 33 33 H 1.08997 * 109.47299 * 29.73169 * 9 8 7 34 34 H 1.09003 * 109.47051 * 149.73001 * 9 8 7 35 35 H 1.08003 * 119.75651 * 179.97438 * 11 10 8 36 36 H 1.09007 * 109.47217 * 19.99712 * 13 12 11 37 37 H 1.08996 * 109.47437 * 139.99918 * 13 12 11 38 38 H 1.00895 * 111.00225 * 56.04246 * 14 13 12 39 39 H 1.00893 * 110.99922 * 180.02562 * 14 13 12 40 40 H 0.97002 * 119.99948 * 180.27255 * 16 15 7 41 41 H 0.96995 * 120.00413 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.11399 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2833 2.3780 -0.0005 5 6 1.8946 3.6164 -0.0011 6 6 3.2778 3.7118 -0.0016 7 7 3.8931 4.9608 -0.0016 8 6 4.1969 5.5765 1.1713 9 6 3.8604 4.8935 2.4718 10 7 4.7783 6.7436 1.1948 11 6 5.1013 7.3986 0.0744 12 6 4.8288 6.8598 -1.1406 13 6 5.1912 7.5935 -2.4061 14 7 3.9980 8.2605 -2.9442 15 6 4.1967 5.5899 -1.1951 16 7 3.9120 5.0258 -2.3479 17 6 4.0607 2.5335 -0.0075 18 6 5.4687 2.6154 -0.0144 19 1 5.9604 3.4949 0.3744 20 6 6.2287 1.5571 -0.5252 21 7 5.6676 0.6608 -1.2959 22 14 8.0444 1.4240 -0.1068 23 1 8.2096 0.6185 1.1299 24 1 8.7635 0.7649 -1.2264 25 1 8.6036 2.7826 0.1091 26 6 3.4233 1.2792 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2053 2.3130 -0.0002 31 1 1.2932 4.5135 -0.0011 32 1 2.8595 5.1870 2.7880 33 1 3.8957 3.8128 2.3344 34 1 4.5828 5.1866 3.2336 35 1 5.5817 8.3638 0.1374 36 1 5.9564 8.3385 -2.1877 37 1 5.5735 6.8845 -3.1404 38 1 3.5871 8.8755 -2.2580 39 1 4.2150 8.7595 -3.7938 40 1 4.1346 5.4775 -3.1770 41 1 6.1944 -0.0725 -1.6502 42 1 4.0107 0.3729 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167676226.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:54 Heat of formation + Delta-G solvation = 34.556048 kcal Electronic energy + Delta-G solvation = -26716.700076 eV Core-core repulsion = 23082.768616 eV Total energy + Delta-G solvation = -3633.931460 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.23954 -40.39112 -38.44696 -36.94873 -36.06733 -35.28340 -33.88958 -31.70250 -31.59359 -30.15949 -29.43020 -27.90486 -27.08028 -25.39339 -24.50106 -23.12064 -22.72638 -21.67553 -19.60439 -19.02789 -18.26486 -17.98854 -17.39277 -17.26990 -16.88799 -16.54882 -16.34223 -15.89182 -15.54723 -15.26001 -15.05141 -14.57207 -14.43331 -14.23525 -13.84085 -13.61518 -13.53736 -13.45282 -13.29460 -13.00551 -12.94981 -12.84734 -12.74600 -12.38710 -12.22369 -11.95401 -11.65780 -11.53492 -11.06196 -10.83099 -10.69784 -10.00416 -9.63343 -9.48173 -8.86578 -8.62815 -8.35767 -6.46529 -0.06324 0.83729 0.95265 1.21793 1.30798 1.42964 1.45647 1.84282 2.12351 2.61674 2.76232 2.78454 3.24866 3.50859 3.73451 3.82806 4.00072 4.07395 4.21218 4.32557 4.49290 4.50063 4.51913 4.62113 4.66374 4.69712 4.76861 4.78638 4.92210 5.03547 5.10991 5.14456 5.22355 5.39820 5.43007 5.60811 5.74966 5.88591 5.96263 6.02864 6.18138 6.26461 6.51953 6.62623 6.80066 6.82509 6.99146 7.12635 7.69289 8.22380 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.010218 B = 0.006258 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.680817 B = 4473.117029 C = 5770.020357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.348 6.348 3 C 0.142 3.858 4 C -0.303 4.303 5 C -0.034 4.034 6 C -0.034 4.034 7 N -0.419 5.419 8 C 0.409 3.591 9 C -0.101 4.101 10 N -0.582 5.582 11 C 0.146 3.854 12 C -0.274 4.274 13 C 0.133 3.867 14 N -0.853 5.853 15 C 0.413 3.587 16 N -0.784 5.784 17 C 0.144 3.856 18 C -0.464 4.464 19 H 0.064 0.936 20 C 0.040 3.960 21 N -0.803 5.803 22 Si 0.972 3.028 23 H -0.251 1.251 24 H -0.269 1.269 25 H -0.265 1.265 26 C -0.221 4.221 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.116 0.884 30 H 0.132 0.868 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.185 0.815 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.347 0.653 39 H 0.354 0.646 40 H 0.341 0.659 41 H 0.290 0.710 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.486 8.916 4.388 10.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.262 6.262 3 C 0.097 3.903 4 C -0.323 4.323 5 C -0.053 4.053 6 C -0.126 4.126 7 N -0.113 5.113 8 C 0.147 3.853 9 C -0.159 4.159 10 N -0.306 5.306 11 C 0.005 3.995 12 C -0.286 4.286 13 C 0.002 3.998 14 N -0.386 5.386 15 C 0.141 3.859 16 N -0.416 5.416 17 C 0.140 3.860 18 C -0.492 4.492 19 H 0.082 0.918 20 C -0.178 4.178 21 N -0.428 5.428 22 Si 0.793 3.207 23 H -0.175 1.175 24 H -0.194 1.194 25 H -0.189 1.189 26 C -0.242 4.242 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.134 0.866 30 H 0.150 0.850 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.095 0.905 34 H 0.133 0.867 35 H 0.202 0.798 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.160 0.840 39 H 0.168 0.832 40 H 0.158 0.842 41 H 0.100 0.900 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.935 7.223 4.470 8.987 hybrid contribution 1.361 1.149 -1.409 2.271 sum -1.573 8.372 3.062 9.052 Atomic orbital electron populations 1.23175 0.77439 1.04647 1.01632 1.85996 1.22903 1.28040 1.89298 1.19015 0.92005 0.83892 0.95361 1.20537 0.98973 0.90970 1.21848 1.20428 0.92260 0.96640 0.95990 1.17167 0.90650 0.82487 1.22298 1.41922 1.49417 1.15979 1.03999 1.24035 0.85052 0.88020 0.88224 1.20980 1.05042 1.00177 0.89733 1.68164 1.23435 1.08425 1.30587 1.22563 0.91763 0.98642 0.86506 1.21357 1.11987 0.96893 0.98335 1.20161 0.91799 0.96307 0.91552 1.58562 1.30290 1.39429 1.10312 1.19030 0.91138 0.88266 0.87503 1.69618 1.33381 1.39548 0.99045 1.17331 0.93127 0.89362 0.86226 1.19381 0.91441 1.02295 1.36097 0.91764 1.26707 1.05451 0.93784 0.91866 1.69914 1.40477 1.11120 1.21244 0.85346 0.76315 0.79511 0.79517 1.17497 1.19351 1.18945 1.20363 0.90629 0.98100 1.15131 0.91872 0.93042 0.86581 0.85022 0.87480 0.86952 0.90538 0.86661 0.79822 0.91561 0.92494 0.83988 0.83177 0.84197 0.89954 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.81 113.37 1.11 1.85 16 2 O -0.35 -14.67 10.49 -92.71 -0.97 -15.64 16 3 C 0.14 6.68 6.67 22.47 0.15 6.83 16 4 C -0.30 -12.82 9.03 22.52 0.20 -12.61 16 5 C -0.03 -1.47 9.94 22.34 0.22 -1.25 16 6 C -0.03 -1.62 3.02 38.86 0.12 -1.51 16 7 N -0.42 -18.17 1.92 -332.71 -0.64 -18.81 16 8 C 0.41 15.16 7.39 137.88 1.02 16.18 16 9 C -0.10 -3.05 9.70 71.24 0.69 -2.36 16 10 N -0.58 -19.74 10.25 -187.10 -1.92 -21.66 16 11 C 0.15 4.47 10.80 83.81 0.90 5.37 16 12 C -0.27 -9.46 5.44 -19.54 -0.11 -9.57 16 13 C 0.13 3.60 6.29 85.56 0.54 4.14 16 14 N -0.85 -20.30 9.61 -189.99 -1.83 -22.13 16 15 C 0.41 18.13 7.51 134.29 1.01 19.14 16 16 N -0.78 -37.91 13.39 -54.49 -0.73 -38.64 16 17 C 0.14 7.54 5.12 -21.20 -0.11 7.43 16 18 C -0.46 -24.66 8.68 23.37 0.20 -24.45 16 19 H 0.06 3.43 7.39 -2.91 -0.02 3.41 16 20 C 0.04 2.02 5.14 85.25 0.44 2.46 16 21 N -0.80 -43.00 10.96 21.83 0.24 -42.76 16 22 Si 0.97 39.03 29.59 68.60 2.03 41.06 16 23 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 24 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 25 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 26 C -0.22 -11.76 8.61 22.79 0.20 -11.56 16 27 H 0.06 1.61 7.65 -2.39 -0.02 1.59 16 28 H 0.05 1.44 7.65 -2.39 -0.02 1.42 16 29 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.13 4.65 6.26 -2.91 -0.02 4.63 16 31 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 32 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.08 2.68 6.60 -2.39 -0.02 2.67 16 34 H 0.11 2.88 8.14 -2.39 -0.02 2.87 16 35 H 0.18 4.00 8.03 -2.91 -0.02 3.98 16 36 H 0.07 1.37 8.01 -2.38 -0.02 1.35 16 37 H 0.06 1.74 7.23 -2.39 -0.02 1.73 16 38 H 0.35 7.38 8.98 -89.70 -0.81 6.57 16 39 H 0.35 6.43 9.08 -89.70 -0.81 5.62 16 40 H 0.34 15.25 7.12 -92.71 -0.66 14.59 16 41 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 42 H 0.11 6.06 6.18 -2.91 -0.02 6.04 16 Total: -1.00 -69.09 351.64 1.59 -67.50 By element: Atomic # 1 Polarization: 52.18 SS G_CDS: -1.18 Total: 51.00 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 6.59 Total: 0.10 kcal Atomic # 7 Polarization: -139.13 SS G_CDS: -4.87 Total: -144.01 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.97 Total: -15.64 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -69.09 1.59 -67.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167676226.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.058 kcal (2) G-P(sol) polarization free energy of solvation -69.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds